Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000240.1

Orthogroup ID

OG0020679

Physical Location & Seq

Genomic Coordinates Reverse (-)

78380 .. 79072

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgagcaaaggagccaagagaaaggctcggccggcggcgacggaggaggccaaagccaccaccacacgcgtcaaggcctctcagcagcatcaggaggcggagcctcagtacgtgtcggagaagcgcaaccttcaagacctttggaaggcagcattcccggttgggaccgagtgggatcagttggactcggtctacaaatacaactgggatttctcgaatctcgagaaggaatttaaagagggtggaaagttgtacggaattggaacgaccaacaaagtctacatcctcgccgctacggaggctccgtcgccgtcgctacctgtgctgattcctacgctggcggcggtcgtggcgcctcggccgccttcgatggagattgggattcgatcggtgcagagagaagaggagatagttcctatgaagcatcttcatgatcccatacattcctctggagctcagagaaggctggaattcggaaagagcgaccaagtctggttcgaatttgcctcagattttcgtgctgggatgtactcagaggaaggcaagcttgaagcagatgaaggaggaccgctggatgaagttccagtactgtgtgccttatatattgaatccgaaatacgaagaagagaaggagcagaatactgtggtgggatttttcttcccacgggagcctcaactgcccctggggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

25.47

Weight (kDa)

5.41

Isoelectric Point (pI)

58.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020679)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000025073
rosa_multiflora	Rmu_sc0000240.1_g000015
rosa_roxburghii	Rroxscaffold_6G00420160
rosa_samantha	Rh3AG095500 Rh3BG098000 Rh3CG099800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	352
AccI	GTMKAC	2 cut(s)	192, 279
AccII	CGCG	1 cut(s)	69
AciI	CCGC	7 cut(s)	35, 98, 291, 341, 344, 362, 569
AclWI	GGATC	2 cut(s)	183, 428
AcoI	YGGCCR	2 cut(s)	29, 359
AcsI	RAATTY	3 cut(s)	230, 470, 500
AcyI	GRCGYC	1 cut(s)	353
AfaI	GTAC	4 cut(s)	110, 254, 530, 588
AfiI	CCNNNNNNNGG	1 cut(s)	145
AflIII	ACRYGT	2 cut(s)	67, 111
AgsI	TTSAA	3 cut(s)	134, 551, 608
AjnI	CCWGG	1 cut(s)	682
AluBI	AGCT	2 cut(s)	455, 547
AluI	AGCT	2 cut(s)	455, 547
Alw21I	GWGCWC	1 cut(s)	457
AlwI	GGATC	2 cut(s)	183, 428
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	4 cut(s)	29, 48, 75, 359
ApeKI	GCWGC	2 cut(s)	85, 149
ApoI	RAATTY	3 cut(s)	230, 470, 500
AspLEI	GCGC	2 cut(s)	126, 355
AspS9I	GGNCC	2 cut(s)	165, 566
AsuC2I	CCSGG	1 cut(s)	158
AsuII	TTCGAA	1 cut(s)	498
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	165, 566
BanI	GGYRCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	457
BarI	GAAGNNNNNNTAC	2 cut(s)	570, 602
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	2 cut(s)	97, 161
BccI	CCATC	1 cut(s)	364
BceAI	ACGGC	1 cut(s)	295
BciT130I	CCWGG	1 cut(s)	684
BcnI	CCSGG	1 cut(s)	158
BfoI	RGCGCY	1 cut(s)	356
BisI	GCNGC	6 cut(s)	36, 86, 150, 291, 342, 362
BlsI	GCNGC	6 cut(s)	37, 87, 151, 292, 343, 363
BmcAI	AGTACT	1 cut(s)	588
Bme1390I	CCNGG	2 cut(s)	158, 684
Bme18I	GGWCC	2 cut(s)	165, 566
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	2 cut(s)	165, 566
BmiI	GGNNCC	6 cut(s)	13, 102, 166, 303, 354, 670
BmrFI	CCNGG	2 cut(s)	158, 684
BmrI	ACTGGG	1 cut(s)	214
BmsI	GCATC	2 cut(s)	97, 433
BmuI	ACTGGG	1 cut(s)	214
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
BpmI	CTGGAG	1 cut(s)	471
Bpu14I	TTCGAA	1 cut(s)	498
BpuMI	CCSGG	1 cut(s)	158
BsaAI	YACGTR	1 cut(s)	112
BsaHI	GRCGYC	1 cut(s)	353
BsaJI	CCNNGG	4 cut(s)	356, 663, 682, 683
BsaXI	ACNNNNNCTCC	6 cut(s)	92, 122, 286, 290, 316, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	209, 584
BseBI	CCWGG	1 cut(s)	684
BseDI	CCNNGG	4 cut(s)	356, 663, 682, 683
BseGI	GGATG	3 cut(s)	282, 531, 580
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMII	CTCAG	5 cut(s)	95, 119, 470, 522, 546
BseNI	ACTGG	2 cut(s)	209, 584
BseRI	GAGGAG	2 cut(s)	59, 419
BseX3I	CGGCCG	2 cut(s)	29, 359
BseXI	GCAGC	2 cut(s)	97, 161
BseYI	CCCAGC	1 cut(s)	521
BsgI	GTGCAG	1 cut(s)	413
Bsh1236I	CGCG	1 cut(s)	69
Bsh1285I	CGRYCG	4 cut(s)	32, 348, 362, 389
BshFI	GGCC	4 cut(s)	31, 50, 77, 361
BshNI	GGYRCC	1 cut(s)	352
BsiEI	CGRYCG	4 cut(s)	32, 348, 362, 389
BsiHKAI	GWGCWC	1 cut(s)	457
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	32, 158
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	4 cut(s)	31, 50, 77, 361
BsoBI	CYCGRG	1 cut(s)	221
Bsp119I	TTCGAA	1 cut(s)	498
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp143I	GATC	3 cut(s)	175, 386, 433
BspACI	CCGC	7 cut(s)	35, 98, 291, 341, 344, 362, 569
BspANI	GGCC	4 cut(s)	31, 50, 77, 361
BspCNI	CTCAG	5 cut(s)	94, 118, 469, 521, 545
BspFNI	CGCG	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	6 cut(s)	13, 102, 166, 303, 354, 670
BspPI	GGATC	2 cut(s)	183, 428
BspT104I	TTCGAA	1 cut(s)	498
BspT107I	GGYRCC	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	31
BsrI	ACTGG	2 cut(s)	209, 584
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	4 cut(s)	356, 663, 682, 683
BssMI	GATC	3 cut(s)	175, 386, 433
BssNI	GRCGYC	1 cut(s)	353
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	2 cut(s)	591, 644
Bst6I	CTCTTC	2 cut(s)	396, 619
BstACI	GRCGYC	1 cut(s)	353
BstBAI	YACGTR	1 cut(s)	112
BstBI	TTCGAA	1 cut(s)	498
BstC8I	GCNNGC	3 cut(s)	33, 339, 545
BstDEI	CTNAG	5 cut(s)	81, 105, 456, 508, 532
BstDSI	CCRYGG	1 cut(s)	663
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	3 cut(s)	282, 531, 580
BstFNI	CGCG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	2 cut(s)	126, 355
BstKTI	GATC	3 cut(s)	178, 389, 436
BstMBI	GATC	3 cut(s)	175, 386, 433
BstMCI	CGRYCG	4 cut(s)	32, 348, 362, 389
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 299, 322, 350, 361, 677
BstNI	CCWGG	1 cut(s)	684
BstSCI	CCNGG	2 cut(s)	156, 682
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	2 cut(s)	97, 161
BstZI	CGGCCG	2 cut(s)	29, 359
BsuRI	GGCC	4 cut(s)	31, 50, 77, 361
BtgI	CCRYGG	1 cut(s)	663
BtsCI	GGATG	3 cut(s)	282, 531, 580
Cac8I	GCNNGC	3 cut(s)	33, 339, 545
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	2 cut(s)	126, 355
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	2 cut(s)	165, 566
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	4 cut(s)	109, 253, 529, 587
CviAII	CATG	1 cut(s)	431
CviQI	GTAC	4 cut(s)	109, 253, 529, 587
DdeI	CTNAG	5 cut(s)	81, 105, 456, 508, 532
DinI	GGCGCC	1 cut(s)	354
DpnI	GATC	3 cut(s)	177, 388, 435
DpnII	GATC	3 cut(s)	175, 386, 433
DraI	TTTAAA	1 cut(s)	235
EaeI	YGGCCR	2 cut(s)	29, 359
EagI	CGGCCG	2 cut(s)	29, 359
Eam1104I	CTCTTC	2 cut(s)	396, 619
EarI	CTCTTC	2 cut(s)	396, 619
EciI	GGCGGA	1 cut(s)	113
Ecl136II	GAGCTC	1 cut(s)	455
EclXI	CGGCCG	2 cut(s)	29, 359
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	457
Eco47I	GGWCC	2 cut(s)	165, 566
Eco52I	CGGCCG	2 cut(s)	29, 359
Eco53kI	GAGCTC	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	455
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	682
EcoT38I	GRGCYC	1 cut(s)	457
EgeI	GGCGCC	1 cut(s)	354
EheI	GGCGCC	1 cut(s)	354
FaeI	CATG	1 cut(s)	434
FaiI	YATR	5 cut(s)	419, 432, 440, 601, 603
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	1 cut(s)	430
FblI	GTMKAC	2 cut(s)	192, 279
Fnu4HI	GCNGC	6 cut(s)	36, 86, 150, 291, 342, 362
FokI	GGATG	3 cut(s)	269, 538, 587
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	6 cut(s)	36, 86, 150, 291, 342, 362
GlaI	GCGC	2 cut(s)	125, 354
GluI	GCNGC	6 cut(s)	36, 86, 150, 291, 342, 362
GsaI	CCCAGC	1 cut(s)	525
GsuI	CTGGAG	1 cut(s)	471
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	4 cut(s)	31, 50, 77, 361
HapII	CCGG	2 cut(s)	32, 158
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	2 cut(s)	126, 355
Hin1I	GRCGYC	1 cut(s)	353
Hin1II	CATG	1 cut(s)	434
Hin6I	GCGC	2 cut(s)	124, 353
HinP1I	GCGC	2 cut(s)	124, 353
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	5 cut(s)	185, 217, 328, 382, 608
HpaII	CCGG	2 cut(s)	32, 158
Hpy166II	GTNNAC	2 cut(s)	193, 280
Hpy188I	TCNGA	6 cut(s)	118, 459, 476, 511, 535, 613
Hpy188III	TCNNGA	7 cut(s)	92, 134, 214, 221, 223, 431, 450
Hpy8I	GTNNAC	2 cut(s)	193, 280
Hpy99I	CGWCG	3 cut(s)	43, 310, 316
HpyAV	CCTTC	8 cut(s)	139, 140, 220, 375, 456, 533, 554, 623
HpyCH4III	ACNGT	2 cut(s)	591, 644
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	1 cut(s)	394
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 299, 322, 350, 361, 677
HpyF3I	CTNAG	5 cut(s)	81, 105, 456, 508, 532
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	353
Hsp92II	CATG	1 cut(s)	434
HspAI	GCGC	2 cut(s)	124, 353
KasI	GGCGCC	1 cut(s)	352
KroI	GCCGGC	1 cut(s)	31
KroNI	GCCGGC	1 cut(s)	33
Kzo9I	GATC	3 cut(s)	175, 386, 433
LmnI	GCTCC	6 cut(s)	11, 100, 307, 452, 632, 668
Lsp1109I	GCAGC	2 cut(s)	97, 161
LweI	GCATC	2 cut(s)	97, 433
MaeII	ACGT	1 cut(s)	111
MalI	GATC	3 cut(s)	177, 388, 435
MboI	GATC	3 cut(s)	175, 386, 433
MboII	GAAGA	5 cut(s)	413, 419, 633, 636, 650
MhlI	GDGCHC	1 cut(s)	457
MluCI	AATT	4 cut(s)	230, 258, 470, 500
MluI	ACGCGT	1 cut(s)	67
Mly113I	GGCGCC	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	2 cut(s)	96, 162
MroNI	GCCGGC	1 cut(s)	31
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	429
MspA1I	CMGCKG	1 cut(s)	571
MspI	CCGG	2 cut(s)	32, 158
MspR9I	CCNGG	2 cut(s)	158, 684
Mva1269I	GAATGC	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	684
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	6 cut(s)	32, 299, 322, 350, 361, 677
NaeI	GCCGGC	1 cut(s)	33
NarI	GGCGCC	1 cut(s)	353
NciI	CCSGG	1 cut(s)	158
NdeII	GATC	3 cut(s)	175, 386, 433
NgoMIV	GCCGGC	1 cut(s)	31
NlaIII	CATG	1 cut(s)	434
NlaIV	GGNNCC	6 cut(s)	13, 102, 166, 303, 354, 670
NmeAIII	GCCGAG	2 cut(s)	7, 337
NspV	TTCGAA	1 cut(s)	498
PaeR7I	CTCGAG	1 cut(s)	221
PagI	TCATGA	1 cut(s)	430
PasI	CCCWGGG	1 cut(s)	683
PceI	AGGCCT	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	2 cut(s)	302, 480
PctI	GAATGC	1 cut(s)	152
PdiI	GCCGGC	1 cut(s)	33
PfeI	GAWTC	4 cut(s)	217, 328, 382, 608
PflFI	GACNNNGTC	2 cut(s)	188, 488
PkrI	GCNGC	6 cut(s)	37, 87, 151, 292, 343, 363
Ple19I	CGATCG	1 cut(s)	389
PleI	GAGTC	1 cut(s)	179
PluTI	GGCGCC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	179
Ppu21I	YACGTR	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	457
Psp6I	CCWGG	1 cut(s)	682
PspFI	CCCAGC	1 cut(s)	521
PspGI	CCWGG	1 cut(s)	682
PspN4I	GGNNCC	6 cut(s)	13, 102, 166, 303, 354, 670
PspPI	GGNCC	2 cut(s)	165, 566
PsyI	GACNNNGTC	2 cut(s)	188, 488
PvuI	CGATCG	1 cut(s)	389
RsaI	GTAC	4 cut(s)	110, 254, 530, 588
RsaNI	GTAC	4 cut(s)	109, 253, 529, 587
RseI	CAYNNNNRTG	1 cut(s)	429
SacI	GAGCTC	1 cut(s)	457
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	6 cut(s)	36, 86, 150, 291, 342, 362
Sau3AI	GATC	3 cut(s)	175, 386, 433
Sau96I	GGNCC	2 cut(s)	165, 566
ScaI	AGTACT	1 cut(s)	588
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	158, 684
SduI	GDGCHC	1 cut(s)	457
SetI	ASST	6 cut(s)	114, 132, 141, 322, 457, 549
SfaNI	GCATC	2 cut(s)	97, 433
SfoI	GGCGCC	1 cut(s)	354
Sfr274I	CTCGAG	1 cut(s)	221
SfuI	TTCGAA	1 cut(s)	498
SinI	GGWCC	2 cut(s)	165, 566
SlaI	CTCGAG	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	4 cut(s)	230, 258, 470, 500
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	7 cut(s)	35, 98, 291, 341, 344, 362, 569
SspDI	GGCGCC	1 cut(s)	352
SstI	GAGCTC	1 cut(s)	457
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	156, 682
TaaI	ACNGT	2 cut(s)	591, 644
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	5 cut(s)	215, 222, 368, 385, 498
TaqII	GACCGA	2 cut(s)	178, 182
TasI	AATT	4 cut(s)	230, 258, 470, 500
TatI	WGTACW	2 cut(s)	528, 586
TauI	GCSGC	4 cut(s)	38, 293, 344, 364
TfiI	GAWTC	4 cut(s)	217, 328, 382, 608
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TseI	GCWGC	2 cut(s)	85, 149
TspDTI	ATGAA	4 cut(s)	419, 434, 573, 591
TspGWI	ACGGA	4 cut(s)	56, 270, 294, 311
Tth111I	GACNNNGTC	2 cut(s)	188, 488
VpaK11BI	GGWCC	2 cut(s)	165, 566
XagI	CCTNNNNNAGG	1 cut(s)	143
XapI	RAATTY	3 cut(s)	230, 470, 500
XhoI	CTCGAG	1 cut(s)	221
XmiI	GTMKAC	2 cut(s)	192, 279
ZrmI	AGTACT	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.