Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000259.1

Orthogroup ID

OG0024891

Physical Location & Seq

Genomic Coordinates Reverse (-)

166247 .. 166816

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000259.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atggatgcagctccgcatttgacgggtttctttcttaagttgtttgtatggattgttgaggtccccattattggttctttgatcatctcagtgttgaagaagcagaataagatgactcagttattgaggaacactgtgattccagaagcacccatgttcaaacctgaatttcctcctcaagaaccagaaaccggggttgttgttgtggatgaggatggaaaaccagaagacagagttggagtggccttgaaatgtctttcaaactatgatcctgctacctgtttgttcgaaacagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005886 GO:0006066 GO:0006576 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009308 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0012505 GO:0016020 GO:0016787 GO:0016810 GO:0016811 GO:0031090 GO:0034308 GO:0034641 GO:0042439 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044106 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0047412 GO:0050896 GO:0051704 GO:0051707 GO:0070291 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901564 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amidase

Protein Analysis

99

Amino Acids

11.01

Weight (kDa)

4.84

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024891)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0133671
rosa_multiflora	Rmu_sc0000259.1_g000039
rosa_samantha	Rh2BG492800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	71, 191
AflII	CTTAAG	1 cut(s)	35
AgsI	TTSAA	4 cut(s)	97, 160, 250, 261
AjuI	GAANNNNNNNTTGG	2 cut(s)	219, 251
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	1 cut(s)	193
AsuII	TTCGAA	1 cut(s)	288
AvaII	GGWCC	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	1 cut(s)	209
BclI	TGATCA	1 cut(s)	81
BcnI	CCSGG	1 cut(s)	193
BfrI	CTTAAG	1 cut(s)	35
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	193
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	234
Bpu14I	TTCGAA	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 191
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	3 cut(s)	10, 214, 220
BseLI	CCNNNNNNNGG	2 cut(s)	71, 191
BseMII	CTCAG	2 cut(s)	102, 131
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	20
BshFI	GGCC	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	71, 191
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	81, 268
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	2 cut(s)	101, 130
BspLI	GGNNCC	1 cut(s)	63
BspPI	GGATC	1 cut(s)	263
BspT104I	TTCGAA	1 cut(s)	288
BspTI	CTTAAG	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	2 cut(s)	81, 268
Bst4CI	ACNGT	2 cut(s)	136, 295
BstAFI	CTTAAG	1 cut(s)	35
BstBI	TTCGAA	1 cut(s)	288
BstDEI	CTNAG	2 cut(s)	88, 117
BstF5I	GGATG	3 cut(s)	10, 214, 220
BstKTI	GATC	2 cut(s)	84, 271
BstMBI	GATC	2 cut(s)	81, 268
BstSCI	CCNGG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	20
BstV2I	GAAGAC	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	245
BtsCI	GGATG	3 cut(s)	10, 214, 220
BtsIMutI	CAGTG	2 cut(s)	96, 132
Cfr13I	GGNCC	1 cut(s)	61
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	2 cut(s)	11, 245
CviKI_1	RGCY	2 cut(s)	11, 245
DdeI	CTNAG	2 cut(s)	88, 117
DpnI	GATC	2 cut(s)	83, 270
DpnII	GATC	2 cut(s)	81, 268
Eco47I	GGWCC	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	61
FaeI	CATG	1 cut(s)	157
FaiI	YATR	3 cut(s)	49, 155, 267
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	1 cut(s)	153
FbaI	TGATCA	1 cut(s)	81
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	3 cut(s)	17, 221, 227
Fsp4HI	GCNGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	1 cut(s)	192
Hin1II	CATG	1 cut(s)	157
HinfI	GANTC	2 cut(s)	115, 139
HpaII	CCGG	1 cut(s)	192
Hpy188III	TCNNGA	2 cut(s)	143, 179
HpyCH4III	ACNGT	2 cut(s)	136, 295
HpyCH4V	TGCA	1 cut(s)	8
HpyF3I	CTNAG	2 cut(s)	88, 117
Hsp92II	CATG	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	81, 268
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	7 cut(s)	156, 177, 198, 205, 237, 285, 292
Lsp1109I	GCAGC	1 cut(s)	20
MalI	GATC	2 cut(s)	83, 270
MboI	GATC	2 cut(s)	81, 268
MboII	GAAGA	2 cut(s)	109, 239
MluCI	AATT	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	5 cut(s)	52, 120, 183, 186, 205
MseI	TTAA	2 cut(s)	36, 298
MslI	CAYNNNNRTG	1 cut(s)	89
MspCI	CTTAAG	1 cut(s)	35
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	193
NciI	CCSGG	1 cut(s)	193
NdeII	GATC	2 cut(s)	81, 268
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	1 cut(s)	63
NspV	TTCGAA	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PpuMI	RGGWCCY	1 cut(s)	61
Psp5II	RGGWCCY	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	61
PspPPI	RGGWCCY	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	36, 298
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	81, 268
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	193
SetI	ASST	4 cut(s)	13, 63, 166, 281
SfuI	TTCGAA	1 cut(s)	288
SinI	GGWCC	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	89
SmlI	CTYRAG	2 cut(s)	35, 177
SmoI	CTYRAG	2 cut(s)	35, 177
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	191
TaaI	ACNGT	2 cut(s)	136, 295
TaqI	TCGA	1 cut(s)	288
TasI	AATT	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	2 cut(s)	36, 298
Tru9I	TTAA	2 cut(s)	36, 298
TscAI	CASTG	2 cut(s)	96, 139
TseI	GCWGC	1 cut(s)	8
TspRI	CASTG	2 cut(s)	96, 139
Vha464I	CTTAAG	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.