Rmu_sc0000266.1_g000011

Xyloglucan galactosyltransferase KATAMARI1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000266.1
OG0014036
Physical Location & Seq
Forward (+)
58270 .. 58959
690 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 690 bp
atggcctcctgcaactccactttactaatccctttcttcttcttcttcgcgttggcagcttccgagtctttaatcgaccaatcggactcaaacccaacggactgcgccgaccgttggatccacatccggcgcctcccgtccactttcaacctcgacctcctctccaactgctccggctaccccttgttcggcgacctctgccccttcttgcccaaccatggcctcggccacaagacccacaaccgctcccagagctggtaccgaactgactccctaatgatggagctcatcttccaccgccggatgctcgaatacccatgtctgacgtcagatccccgccaggctgacgccgtctacctcccctactacgccggcatcgacgccatgaggtacctctacggccccgaagtcaactccagcgccgatcagggccttcagctctacgagtttttgcaggaggatttgccggaggtgtggagtcggaactcgggtcacgaccatttcatggtcctggcccgacccgcctgggatttctctcagccgttggattctgatccgccgacgtgggggacctcgcttctggagctcccccattttttcaacgtcacggctttgacggtggaggcgcgtgagcaatttcgcacatcttctatcagtataacaataaggtcaaaattttttgacttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

229

Amino Acids

26.36

Weight (kDa)

5.02

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 37 - 208 5.7e-27 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22580
fragaria_vesca FvH4_5g00260
malus_domestica MD04G1084800.v1.1 MD09G1022700.v1.1
prunus_persica Prupe.5G075200_v2.0.a1
pyrus_communis pycom04g07570 pycom111g01900
rosa_chinensis RchiOBHm_Chr7g0202381
rosa_laevigata RLG00000003605
rosa_multiflora Rmu_co8347103.1_g000001 Rmu_sc0000266.1_g000011
rosa_rugosa Rorug07G0070400
rosa_samantha Rh7AG197700 Rh7BG198700 Rh7CG208900 Rh7DG204600
rosa_wichuraiana Rw7G017330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 329
Acc65I GGTACC 2 cut(s) 258, 390
AccB1I GGYRCC 3 cut(s) 129, 258, 390
AccB7I CCANNNNNTGG 1 cut(s) 505
AccBSI CCGCTC 1 cut(s) 246
AccI GTMKAC 1 cut(s) 354
AccII CGCG 2 cut(s) 50, 628
AciI CCGC 5 cut(s) 244, 298, 337, 522, 557
AclWI GGATC 4 cut(s) 112, 125, 326, 548
AcoI YGGCCR 1 cut(s) 226
AcsI RAATTY 1 cut(s) 674
AcuI CTGAAG 1 cut(s) 419
AcyI GRCGYC 4 cut(s) 130, 326, 348, 381
AfaI GTAC 2 cut(s) 260, 392
AfiI CCNNNNNNNGG 7 cut(s) 114, 188, 218, 255, 280, 505, 566
AgsI TTSAA 2 cut(s) 148, 601
AjiI CACGTC 1 cut(s) 564
AjnI CCWGG 3 cut(s) 339, 510, 524
AluBI AGCT 5 cut(s) 59, 255, 286, 439, 586
AluI AGCT 5 cut(s) 59, 255, 286, 439, 586
Alw21I GWGCWC 2 cut(s) 288, 588
AlwI GGATC 4 cut(s) 112, 125, 326, 548
Ama87I CYCGRG 1 cut(s) 487
AoxI GGCC 6 cut(s) 3, 220, 226, 400, 430, 513
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 674
Asp718I GGTACC 2 cut(s) 258, 390
AspLEI GCGC 4 cut(s) 107, 132, 422, 628
AspS9I GGNCC 5 cut(s) 401, 430, 508, 514, 570
AvaI CYCGRG 1 cut(s) 487
AvaII GGWCC 2 cut(s) 508, 570
BamHI GGATCC 1 cut(s) 117
BanI GGYRCC 3 cut(s) 129, 258, 390
BanII GRGCYC 2 cut(s) 288, 588
Bbv12I GWGCWC 2 cut(s) 288, 588
BbvI GCAGC 1 cut(s) 68
BccI CCATC 1 cut(s) 274
BceAI ACGGC 4 cut(s) 335, 415, 526, 624
BciT130I CCWGG 3 cut(s) 341, 512, 526
BfoI RGCGCY 2 cut(s) 133, 423
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 3 cut(s) 341, 512, 526
Bme18I GGWCC 2 cut(s) 508, 570
BmeT110I CYCGRG 1 cut(s) 487
BmgBI CACGTC 1 cut(s) 564
BmgT120I GGNCC 5 cut(s) 401, 430, 508, 514, 570
BmiI GGNNCC 6 cut(s) 119, 131, 260, 392, 403, 571
BmrFI CCNGG 3 cut(s) 341, 512, 526
BmsI GCATC 2 cut(s) 294, 384
BpmI CTGGAG 2 cut(s) 400, 602
BsaBI GATNNNNATC 2 cut(s) 122, 552
BsaHI GRCGYC 4 cut(s) 130, 326, 348, 381
BsaJI CCNNGG 3 cut(s) 217, 223, 525
BsaXI ACNNNNNCTCC 4 cut(s) 146, 176, 230, 260
Bsc4I CCNNNNNNNGG 7 cut(s) 114, 188, 218, 255, 280, 505, 566
Bse118I RCCGGY 1 cut(s) 371
Bse8I GATNNNNATC 2 cut(s) 122, 552
BseBI CCWGG 3 cut(s) 341, 512, 526
BseDI CCNNGG 3 cut(s) 217, 223, 525
BseGI GGATG 2 cut(s) 123, 309
BseJI GATNNNNATC 2 cut(s) 122, 552
BseLI CCNNNNNNNGG 7 cut(s) 114, 188, 218, 255, 280, 505, 566
BseMII CTCAG 1 cut(s) 551
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 68
Bsh1236I CGCG 2 cut(s) 50, 628
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 6 cut(s) 5, 222, 228, 402, 432, 515
BshNI GGYRCC 3 cut(s) 129, 258, 390
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 2 cut(s) 288, 588
BsiHKCI CYCGRG 1 cut(s) 487
BsiSI CCGG 5 cut(s) 127, 174, 301, 372, 467
BslFI GGGAC 1 cut(s) 583
BslI CCNNNNNNNGG 7 cut(s) 114, 188, 218, 255, 280, 505, 566
BsmFI GGGAC 1 cut(s) 583
BsnI GGCC 6 cut(s) 5, 222, 228, 402, 432, 515
BsoBI CYCGRG 1 cut(s) 487
Bsp1286I GDGCHC 2 cut(s) 288, 588
Bsp143I GATC 4 cut(s) 117, 331, 424, 553
Bsp19I CCATGG 1 cut(s) 217
BspACI CCGC 5 cut(s) 244, 298, 337, 522, 557
BspANI GGCC 6 cut(s) 5, 222, 228, 402, 432, 515
BspCNI CTCAG 1 cut(s) 550
BspFNI CGCG 2 cut(s) 50, 628
BspLI GGNNCC 6 cut(s) 119, 131, 260, 392, 403, 571
BspPI GGATC 4 cut(s) 112, 125, 326, 548
BspT107I GGYRCC 3 cut(s) 129, 258, 390
BsrBI CCGCTC 1 cut(s) 246
BsrFI RCCGGY 1 cut(s) 371
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 3 cut(s) 217, 223, 525
BssMI GATC 4 cut(s) 117, 331, 424, 553
BssNI GRCGYC 4 cut(s) 130, 326, 348, 381
BssT1I CCWWGG 1 cut(s) 217
Bst2UI CCWGG 3 cut(s) 341, 512, 526
Bst4CI ACNGT 2 cut(s) 113, 619
BstACI GRCGYC 4 cut(s) 130, 326, 348, 381
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 1 cut(s) 537
BstDSI CCRYGG 1 cut(s) 217
BstF5I GGATG 2 cut(s) 123, 309
BstFNI CGCG 2 cut(s) 50, 628
BstH2I RGCGCY 2 cut(s) 133, 423
BstHHI GCGC 4 cut(s) 107, 132, 422, 628
BstKTI GATC 4 cut(s) 120, 334, 427, 556
BstMBI GATC 4 cut(s) 117, 331, 424, 553
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 5 cut(s) 56, 198, 252, 521, 583
BstNI CCWGG 3 cut(s) 341, 512, 526
BstSCI CCNGG 3 cut(s) 339, 510, 524
BstUI CGCG 2 cut(s) 50, 628
BstV1I GCAGC 1 cut(s) 68
BstX2I RGATCY 2 cut(s) 117, 331
BstYI RGATCY 2 cut(s) 117, 331
BsuRI GGCC 6 cut(s) 5, 222, 228, 402, 432, 515
BtgI CCRYGG 1 cut(s) 217
BtrI CACGTC 1 cut(s) 564
BtsCI GGATG 2 cut(s) 123, 309
Cac8I GCNNGC 1 cut(s) 373
CfoI GCGC 4 cut(s) 107, 132, 422, 628
Cfr10I RCCGGY 1 cut(s) 371
Cfr13I GGNCC 5 cut(s) 401, 430, 508, 514, 570
CseI GACGC 2 cut(s) 356, 389
Csp6I GTAC 2 cut(s) 259, 391
CviAII CATG 4 cut(s) 218, 318, 385, 505
CviQI GTAC 2 cut(s) 259, 391
DdeI CTNAG 1 cut(s) 537
DinI GGCGCC 1 cut(s) 131
DpnI GATC 4 cut(s) 119, 333, 426, 555
DpnII GATC 4 cut(s) 117, 331, 424, 553
EaeI YGGCCR 1 cut(s) 226
EciI GGCGGA 1 cut(s) 546
Ecl136II GAGCTC 2 cut(s) 286, 586
Eco130I CCWWGG 1 cut(s) 217
Eco24I GRGCYC 2 cut(s) 288, 588
Eco47I GGWCC 2 cut(s) 508, 570
Eco53kI GAGCTC 2 cut(s) 286, 586
Eco57I CTGAAG 1 cut(s) 419
Eco88I CYCGRG 1 cut(s) 487
EcoICRI GAGCTC 2 cut(s) 286, 586
EcoO109I RGGNCCY 2 cut(s) 430, 570
EcoRII CCWGG 3 cut(s) 339, 510, 524
EcoT14I CCWWGG 1 cut(s) 217
EcoT38I GRGCYC 2 cut(s) 288, 588
EgeI GGCGCC 1 cut(s) 131
EheI GGCGCC 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 4 cut(s) 221, 321, 388, 508
FaiI YATR 5 cut(s) 219, 319, 386, 506, 659
FaqI GGGAC 1 cut(s) 583
FatI CATG 4 cut(s) 217, 317, 384, 504
FauI CCCGC 2 cut(s) 344, 529
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 2 cut(s) 110, 316
FriOI GRGCYC 2 cut(s) 288, 588
Fsp4HI GCNGC 1 cut(s) 57
GlaI GCGC 4 cut(s) 106, 131, 421, 627
GluI GCNGC 1 cut(s) 57
GsuI CTGGAG 2 cut(s) 400, 602
HaeII RGCGCY 2 cut(s) 133, 423
HaeIII GGCC 6 cut(s) 5, 222, 228, 402, 432, 515
HapII CCGG 5 cut(s) 127, 174, 301, 372, 467
HgaI GACGC 2 cut(s) 356, 389
HhaI GCGC 4 cut(s) 107, 132, 422, 628
Hin1I GRCGYC 4 cut(s) 130, 326, 348, 381
Hin1II CATG 4 cut(s) 221, 321, 388, 508
Hin6I GCGC 4 cut(s) 105, 130, 420, 626
HinP1I GCGC 4 cut(s) 105, 130, 420, 626
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 5 cut(s) 65, 86, 269, 478, 548
HpaII CCGG 5 cut(s) 127, 174, 301, 372, 467
Hpy166II GTNNAC 3 cut(s) 141, 355, 412
Hpy188I TCNGA 6 cut(s) 64, 85, 324, 331, 483, 553
Hpy188III TCNNGA 2 cut(s) 494, 581
Hpy8I GTNNAC 3 cut(s) 141, 355, 412
Hpy99I CGWCG 2 cut(s) 383, 565
HpyAV CCTTC 2 cut(s) 214, 443
HpyCH4III ACNGT 2 cut(s) 113, 619
HpyCH4IV ACGT 3 cut(s) 326, 563, 603
HpyCH4V TGCA 2 cut(s) 12, 454
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 198, 252, 521, 583
HpyF3I CTNAG 1 cut(s) 537
HpySE526I ACGT 3 cut(s) 326, 563, 603
Hsp92I GRCGYC 4 cut(s) 130, 326, 348, 381
Hsp92II CATG 4 cut(s) 221, 321, 388, 508
HspAI GCGC 4 cut(s) 105, 130, 420, 626
KasI GGCGCC 1 cut(s) 129
KpnI GGTACC 2 cut(s) 262, 394
KroI GCCGGC 1 cut(s) 371
KroNI GCCGGC 1 cut(s) 373
Kzo9I GATC 4 cut(s) 117, 331, 424, 553
LmnI GCTCC 5 cut(s) 176, 251, 283, 583, 591
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 2 cut(s) 294, 384
MaeII ACGT 3 cut(s) 326, 563, 603
MaeIII GTNAC 2 cut(s) 491, 604
MalI GATC 4 cut(s) 119, 333, 426, 555
MbiI CCGCTC 1 cut(s) 246
MboI GATC 4 cut(s) 117, 331, 424, 553
MboII GAAGA 6 cut(s) 28, 31, 34, 37, 283, 639
MflI RGATCY 2 cut(s) 117, 331
MhlI GDGCHC 2 cut(s) 288, 588
MluCI AATT 2 cut(s) 635, 674
Mly113I GGCGCC 1 cut(s) 130
MlyI GAGTC 4 cut(s) 74, 80, 263, 487
MmeI TCCRAC 4 cut(s) 95, 189, 461, 525
MroNI GCCGGC 1 cut(s) 371
MseI TTAA 1 cut(s) 71
MspI CCGG 5 cut(s) 127, 174, 301, 372, 467
MspR9I CCNGG 3 cut(s) 341, 512, 526
MvaI CCWGG 3 cut(s) 341, 512, 526
MvnI CGCG 2 cut(s) 50, 628
MwoI GCNNNNNNNGC 5 cut(s) 56, 198, 252, 521, 583
NaeI GCCGGC 1 cut(s) 373
NarI GGCGCC 1 cut(s) 130
NcoI CCATGG 1 cut(s) 217
NdeII GATC 4 cut(s) 117, 331, 424, 553
NgoMIV GCCGGC 1 cut(s) 371
NlaIII CATG 4 cut(s) 221, 321, 388, 508
NlaIV GGNNCC 6 cut(s) 119, 131, 260, 392, 403, 571
NmeAIII GCCGAG 1 cut(s) 204
NmuCI GTSAC 2 cut(s) 491, 604
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PdiI GCCGGC 1 cut(s) 373
PfeI GAWTC 1 cut(s) 548
PflFI GACNNNGTC 1 cut(s) 350
PflMI CCANNNNNTGG 1 cut(s) 505
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 4 cut(s) 73, 80, 263, 486
PluTI GGCGCC 1 cut(s) 133
PpsI GAGTC 4 cut(s) 73, 80, 263, 486
PpuMI RGGWCCY 1 cut(s) 570
Psp124BI GAGCTC 2 cut(s) 288, 588
Psp5II RGGWCCY 1 cut(s) 570
Psp6I CCWGG 3 cut(s) 339, 510, 524
PspGI CCWGG 3 cut(s) 339, 510, 524
PspN4I GGNNCC 6 cut(s) 119, 131, 260, 392, 403, 571
PspPI GGNCC 5 cut(s) 401, 430, 508, 514, 570
PspPPI RGGWCCY 1 cut(s) 570
PsuI RGATCY 2 cut(s) 117, 331
PsyI GACNNNGTC 1 cut(s) 350
RsaI GTAC 2 cut(s) 260, 392
RsaNI GTAC 2 cut(s) 259, 391
SacI GAGCTC 2 cut(s) 288, 588
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 4 cut(s) 117, 331, 424, 553
Sau96I GGNCC 5 cut(s) 401, 430, 508, 514, 570
SchI GAGTC 4 cut(s) 74, 80, 263, 487
ScrFI CCNGG 3 cut(s) 341, 512, 526
SduI GDGCHC 2 cut(s) 288, 588
SfaNI GCATC 2 cut(s) 294, 384
SfoI GGCGCC 1 cut(s) 131
SinI GGWCC 2 cut(s) 508, 570
Sse9I AATT 2 cut(s) 635, 674
SsiI CCGC 5 cut(s) 244, 298, 337, 522, 557
SspDI GGCGCC 1 cut(s) 129
SstI GAGCTC 2 cut(s) 288, 588
StyD4I CCNGG 3 cut(s) 339, 510, 524
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 2 cut(s) 113, 619
TaiI ACGT 3 cut(s) 329, 566, 606
TaqI TCGA 4 cut(s) 75, 153, 309, 378
TasI AATT 2 cut(s) 635, 674
TfiI GAWTC 1 cut(s) 548
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TseFI GTSAC 2 cut(s) 491, 604
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 2 cut(s) 491, 604
TspDTI ATGAA 1 cut(s) 493
TspGWI ACGGA 1 cut(s) 113
Tth111I GACNNNGTC 1 cut(s) 350
Van91I CCANNNNNTGG 1 cut(s) 505
VpaK11BI GGWCC 2 cut(s) 508, 570
XapI RAATTY 1 cut(s) 674
XmiI GTMKAC 1 cut(s) 354
ZraI GACGTC 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.