Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000281.1

Orthogroup ID

OG0020721

Physical Location & Seq

Genomic Coordinates Reverse (-)

62355 .. 62708

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000281.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgtatggagtgaaggtgttgacagtatctgtttgtagtgtcttgaccgcaaccttttctggttctgcaagcaagttgttagatttgaatgttgccgagacatatatgtgggcacaagcatttaatgacttacagagtaatgtaaatggggaaattagaaatgtactttctagtggtagagttacggtactgaaagagatggaagcagttgatggtattgtgaagcacttgtatcctatgatccaagatgacgaggcccttgcagaagaagaagcattcaagaattctactttagatttagaaaggaacgcacagaatctgatgggaaatgtagaagggcaggttgtgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

117

Amino Acids

12.84

Weight (kDa)

4.54

Isoelectric Point (pI)

23.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020721)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000281.1_g000014 Rmu_sc0000365.1_g000084 Rmu_sc0005967.1_g000007 Rmu_sc0022811.1_g000001
rosa_samantha	Rh2AG259400 Rh2DG267800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	331
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	283
AfaI	GTAC	2 cut(s)	165, 189
AgsI	TTSAA	2 cut(s)	88, 280
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	235
AlwNI	CAGNNNCTG	2 cut(s)	29, 319
AoxI	GGCC	1 cut(s)	255
ApoI	RAATTY	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	115
BccI	CCATC	3 cut(s)	193, 206, 316
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciVI	GTATCC	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	256
BsaXI	ACNNNNNCTCC	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	115
BshFI	GGCC	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	240
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	1 cut(s)	257
BspMI	ACCTGC	1 cut(s)	331
BspPI	GGATC	1 cut(s)	235
BssMI	GATC	1 cut(s)	240
Bst4CI	ACNGT	2 cut(s)	25, 187
BstC8I	GCNNGC	1 cut(s)	70
BstKTI	GATC	1 cut(s)	243
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	240
BstSLI	GKGCMC	1 cut(s)	115
BsuI	GTATCC	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	257
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	70
CaiI	CAGNNNCTG	2 cut(s)	29, 319
Cfr13I	GGNCC	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	164, 188
CviJI	RGCY	1 cut(s)	257
CviKI_1	RGCY	1 cut(s)	257
CviQI	GTAC	2 cut(s)	164, 188
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRI	GAATTC	1 cut(s)	283
FaiI	YATR	5 cut(s)	6, 103, 105, 107, 239
FspBI	CTAG	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	257
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	1 cut(s)	321
Hpy188III	TCNNGA	2 cut(s)	43, 280
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	2 cut(s)	7, 329
HpyCH4III	ACNGT	2 cut(s)	25, 187
HpyCH4V	TGCA	2 cut(s)	68, 263
Kzo9I	GATC	1 cut(s)	240
LpnPI	CCDG	2 cut(s)	45, 326
MaeI	CTAG	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	1 cut(s)	242
MboI	GATC	1 cut(s)	240
MboII	GAAGA	2 cut(s)	278, 281
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	2 cut(s)	153, 283
MnlI	CCTC	2 cut(s)	247, 342
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	106
Mva1269I	GAATGC	1 cut(s)	275
NdeII	GATC	1 cut(s)	240
NmeAIII	GCCGAG	1 cut(s)	121
PctI	GAATGC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	316
PspPI	GGNCC	1 cut(s)	256
PstNI	CAGNNNCTG	2 cut(s)	29, 319
RsaI	GTAC	2 cut(s)	165, 189
RsaNI	GTAC	2 cut(s)	164, 188
RseI	CAYNNNNRTG	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	240
Sau96I	GGNCC	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	4 cut(s)	18, 56, 345, 353
SmiMI	CAYNNNNRTG	1 cut(s)	106
Sse9I	AATT	2 cut(s)	153, 283
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	1 cut(s)	171
TaaI	ACNGT	2 cut(s)	25, 187
TasI	AATT	2 cut(s)	153, 283
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
XapI	RAATTY	1 cut(s)	283
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.