Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022811.1

Orthogroup ID

OG0020721

Physical Location & Seq

Genomic Coordinates Forward (+)

15472 .. 15840

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022811.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgtgggcacaagcatttaatgacttacagagtaatgtaaatggggaaattagaaatgtactttctagtggtagagttacggtactgaaagagctggaagcagttgatggtattgtgaagcacttgtatcctatgatccaagatgacgtggccctcgcagaagaagaagcattcaagaattctacttcagatttagaaaggaaggcacagaatctttcccaaggacttgatcttctgaccaaggaagtggatgggtttttccaaatccttttgactggacgcgaagcctttctttctaagctgagatcaggtggagcagtctctgaccagatgatgatgggaaatgtagaagggcaggttgtgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

122

Amino Acids

13.47

Weight (kDa)

4.71

Isoelectric Point (pI)

23.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020721)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000281.1_g000014 Rmu_sc0000365.1_g000084 Rmu_sc0005967.1_g000007 Rmu_sc0022811.1_g000001
rosa_samantha	Rh2AG259400 Rh2DG267800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	346
AccII	CGCG	1 cut(s)	282
AclWI	GGATC	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	2 cut(s)	60, 84
AgsI	TTSAA	1 cut(s)	175
AjiI	CACGTC	1 cut(s)	148
AluBI	AGCT	2 cut(s)	94, 301
AluI	AGCT	2 cut(s)	94, 301
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	1 cut(s)	130
AlwNI	CAGNNNCTG	1 cut(s)	323
AoxI	GGCC	1 cut(s)	150
ApoI	RAATTY	1 cut(s)	178
Asp700I	GAANNNNTTC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	10
BccI	CCATC	3 cut(s)	101, 245, 331
BciVI	GTATCC	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	66
BfuAI	ACCTGC	1 cut(s)	346
BfuI	GTATCC	1 cut(s)	138
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	220, 240
Bse1I	ACTGG	1 cut(s)	280
BseDI	CCNNGG	2 cut(s)	220, 240
BseGI	GGATG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	280
BseSI	GKGCMC	1 cut(s)	10
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	325
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	3 cut(s)	135, 229, 305
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	294
BspFNI	CGCG	1 cut(s)	282
BspMI	ACCTGC	1 cut(s)	346
BspPI	GGATC	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	2 cut(s)	220, 240
BssMI	GATC	3 cut(s)	135, 229, 305
BssT1I	CCWWGG	2 cut(s)	220, 240
Bst4CI	ACNGT	1 cut(s)	82
BstDEI	CTNAG	2 cut(s)	297, 302
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	282
BstKTI	GATC	3 cut(s)	138, 232, 308
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	3 cut(s)	135, 229, 305
BstSLI	GKGCMC	1 cut(s)	10
BstUI	CGCG	1 cut(s)	282
BstXI	CCANNNNNNTGG	1 cut(s)	247
BsuI	GTATCC	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	152
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	256
BveI	ACCTGC	1 cut(s)	346
CaiI	CAGNNNCTG	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	151
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	2 cut(s)	59, 83
CviJI	RGCY	4 cut(s)	94, 152, 287, 301
CviKI_1	RGCY	4 cut(s)	94, 152, 287, 301
CviQI	GTAC	2 cut(s)	59, 83
DdeI	CTNAG	2 cut(s)	297, 302
DpnI	GATC	3 cut(s)	137, 231, 307
DpnII	GATC	3 cut(s)	135, 229, 305
Eco130I	CCWWGG	2 cut(s)	220, 240
Eco57I	CTGAAG	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	178
EcoT14I	CCWWGG	2 cut(s)	220, 240
ErhI	CCWWGG	2 cut(s)	220, 240
FaiI	YATR	1 cut(s)	134
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FokI	GGATG	1 cut(s)	263
FspBI	CTAG	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	152
HgaI	GACGC	1 cut(s)	288
HinfI	GANTC	1 cut(s)	211
Hpy188I	TCNGA	3 cut(s)	190, 237, 325
Hpy188III	TCNNGA	1 cut(s)	175
HpyAV	CCTTC	2 cut(s)	196, 344
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	147
HpyF3I	CTNAG	2 cut(s)	297, 302
HpySE526I	ACGT	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	135, 229, 305
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	5 cut(s)	80, 261, 294, 341, 341
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	3 cut(s)	137, 231, 307
MboI	GATC	3 cut(s)	135, 229, 305
MboII	GAAGA	3 cut(s)	173, 176, 224
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	2 cut(s)	48, 178
MnlI	CCTC	2 cut(s)	164, 357
MroXI	GAANNNNTTC	1 cut(s)	288
MseI	TTAA	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	170
MvnI	CGCG	1 cut(s)	282
NdeII	GATC	3 cut(s)	135, 229, 305
PctI	GAATGC	1 cut(s)	170
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	151
PstNI	CAGNNNCTG	1 cut(s)	323
RsaI	GTAC	2 cut(s)	60, 84
RsaNI	GTAC	2 cut(s)	59, 83
SaqAI	TTAA	1 cut(s)	18
Sau3AI	GATC	3 cut(s)	135, 229, 305
Sau96I	GGNCC	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	6 cut(s)	96, 150, 303, 313, 360, 368
Sse9I	AATT	2 cut(s)	48, 178
SspMI	CTAG	1 cut(s)	66
StyI	CCWWGG	2 cut(s)	220, 240
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	150
TasI	AATT	2 cut(s)	48, 178
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
XapI	RAATTY	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.