Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005967.1

Orthogroup ID

OG0020721

Physical Location & Seq

Genomic Coordinates Forward (+)

30348 .. 30821

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005967.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgtatggagtgaaggtgttgacagtatctgtttgtagtgtctttgccgctgccttttctggttctgcaagcaagttattagatttgaatgttgccgagacatatttgtgggcacaagcatttaatgacttacagagtaatgtaaatggggaaattagaaatgtactttctagtggtagagttacggtactgaaagagctggaagcagttgatggtattgtgaagcacttgtatcctatgatccaagatggcgtggccctcgcagaagaagaagcattcaagaattctacttcagatttagaaaggaaggcacagaatctttctcaaggacttgatcttctgaccaaggaagtggatgggtttttccaaatccttttgactggacgcgatgccttgctttctaagctgagatcaggtggagcagtctctgaccggatgctgatgggaaatgtagaagggcaggttgtgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

157

Amino Acids

16.98

Weight (kDa)

5.01

Isoelectric Point (pI)

21.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020721)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000281.1_g000014 Rmu_sc0000365.1_g000084 Rmu_sc0005967.1_g000007 Rmu_sc0022811.1_g000001
rosa_samantha	Rh2AG259400 Rh2DG267800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	451
AccII	CGCG	1 cut(s)	387
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	2 cut(s)	165, 189
AgsI	TTSAA	2 cut(s)	88, 280
AluBI	AGCT	2 cut(s)	199, 406
AluI	AGCT	2 cut(s)	199, 406
Alw26I	GTCTC	2 cut(s)	92, 430
AlwI	GGATC	1 cut(s)	235
AlwNI	CAGNNNCTG	2 cut(s)	29, 428
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	4 cut(s)	206, 242, 350, 436
BciVI	GTATCC	1 cut(s)	243
BcoDI	GTCTC	2 cut(s)	92, 430
BfaI	CTAG	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	451
BfuI	GTATCC	1 cut(s)	243
BisI	GCNGC	2 cut(s)	48, 51
BlsI	GCNGC	2 cut(s)	49, 52
BmgT120I	GGNCC	1 cut(s)	256
BmsI	GCATC	2 cut(s)	379, 426
BpuEI	CTTGAG	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	345
BsaWI	WCCGGW	1 cut(s)	432
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	385
BseDI	CCNNGG	1 cut(s)	345
BseGI	GGATG	2 cut(s)	361, 441
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	1 cut(s)	385
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	433
BsmAI	GTCTC	2 cut(s)	92, 430
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	3 cut(s)	240, 334, 410
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	399
BspFNI	CGCG	1 cut(s)	387
BspMI	ACCTGC	1 cut(s)	451
BspPI	GGATC	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	3 cut(s)	240, 334, 410
BssT1I	CCWWGG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	25, 187
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	2 cut(s)	402, 407
BstF5I	GGATG	2 cut(s)	361, 441
BstFNI	CGCG	1 cut(s)	387
BstKTI	GATC	3 cut(s)	243, 337, 413
BstMAI	GTCTC	2 cut(s)	92, 430
BstMBI	GATC	3 cut(s)	240, 334, 410
BstMWI	GCNNNNNNNGC	1 cut(s)	403
BstSLI	GKGCMC	1 cut(s)	115
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	352
BsuI	GTATCC	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	257
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	2 cut(s)	361, 441
BveI	ACCTGC	1 cut(s)	451
Cac8I	GCNNGC	1 cut(s)	70
CaiI	CAGNNNCTG	2 cut(s)	29, 428
Cfr13I	GGNCC	1 cut(s)	256
CseI	GACGC	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	164, 188
CviJI	RGCY	3 cut(s)	199, 257, 406
CviKI_1	RGCY	3 cut(s)	199, 257, 406
CviQI	GTAC	2 cut(s)	164, 188
DdeI	CTNAG	2 cut(s)	402, 407
DpnI	GATC	3 cut(s)	242, 336, 412
DpnII	GATC	3 cut(s)	240, 334, 410
Eco130I	CCWWGG	1 cut(s)	345
Eco57I	CTGAAG	1 cut(s)	276
EcoRI	GAATTC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	345
FaiI	YATR	3 cut(s)	6, 103, 239
Fnu4HI	GCNGC	2 cut(s)	48, 51
FokI	GGATG	2 cut(s)	368, 448
Fsp4HI	GCNGC	2 cut(s)	48, 51
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	2 cut(s)	48, 51
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	433
HgaI	GACGC	1 cut(s)	393
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	1 cut(s)	316
HpaII	CCGG	1 cut(s)	433
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	3 cut(s)	295, 342, 430
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	3 cut(s)	7, 301, 449
HpyCH4III	ACNGT	2 cut(s)	25, 187
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	1 cut(s)	403
HpyF3I	CTNAG	2 cut(s)	402, 407
Kzo9I	GATC	3 cut(s)	240, 334, 410
LmnI	GCTCC	1 cut(s)	419
LpnPI	CCDG	6 cut(s)	45, 185, 366, 399, 446, 446
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	2 cut(s)	379, 426
MaeI	CTAG	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	3 cut(s)	242, 336, 412
MboI	GATC	3 cut(s)	240, 334, 410
MboII	GAAGA	3 cut(s)	278, 281, 329
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	2 cut(s)	153, 283
MnlI	CCTC	2 cut(s)	269, 462
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	106
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	1 cut(s)	433
Mva1269I	GAATGC	1 cut(s)	275
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	1 cut(s)	403
NdeII	GATC	3 cut(s)	240, 334, 410
NmeAIII	GCCGAG	1 cut(s)	121
PctI	GAATGC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	316
PkrI	GCNGC	2 cut(s)	49, 52
PspPI	GGNCC	1 cut(s)	256
PstNI	CAGNNNCTG	2 cut(s)	29, 428
RsaI	GTAC	2 cut(s)	165, 189
RsaNI	GTAC	2 cut(s)	164, 188
RseI	CAYNNNNRTG	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	2 cut(s)	48, 51
Sau3AI	GATC	3 cut(s)	240, 334, 410
Sau96I	GGNCC	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	6 cut(s)	18, 201, 408, 418, 465, 473
SfaNI	GCATC	2 cut(s)	379, 426
SmiMI	CAYNNNNRTG	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
Sse9I	AATT	2 cut(s)	153, 283
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	2 cut(s)	25, 187
TasI	AATT	2 cut(s)	153, 283
TatI	WGTACW	1 cut(s)	163
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseI	GCWGC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	283
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.