Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000365.1

Orthogroup ID

OG0020721

Physical Location & Seq

Genomic Coordinates Forward (+)

367342 .. 367704

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgcgtgctatgtatggagtgaaggtgttgacagtatctgtttgtagtgtctttgctgcagccttttctggttctgcaagcaaggtgttagatttgaatgttgccgagacatatatgtgggcacaagcatttaatgacttacagagtaatgtaaatggggaaattagaaatgtactttctagtggtagagttacggtactgaaagagctggaagcagttgatggtattgtgaagcacttgtatcctatgatccaagatgacgtggccctcgcagaagaagaagcattcaagaattctacttcagatttagaaaggaatgcacagaatctgatgggaaatgtagaagggcaggttgtgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

120

Amino Acids

13.09

Weight (kDa)

4.75

Isoelectric Point (pI)

21.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020721)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000281.1_g000014 Rmu_sc0000365.1_g000084 Rmu_sc0005967.1_g000007 Rmu_sc0022811.1_g000001
rosa_samantha	Rh2AG259400 Rh2DG267800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	340
AclWI	GGATC	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	2 cut(s)	174, 198
AgsI	TTSAA	2 cut(s)	97, 289
AjiI	CACGTC	1 cut(s)	262
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	1 cut(s)	244
AlwNI	CAGNNNCTG	2 cut(s)	38, 328
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	2 cut(s)	56, 59
ApoI	RAATTY	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	124
BbvI	GCAGC	2 cut(s)	43, 71
BccI	CCATC	2 cut(s)	215, 325
BciVI	GTATCC	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	340
BfuI	GTATCC	1 cut(s)	252
BisI	GCNGC	2 cut(s)	57, 60
BlsI	GCNGC	2 cut(s)	58, 61
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	265
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
BseSI	GKGCMC	1 cut(s)	124
BseXI	GCAGC	2 cut(s)	43, 71
BshFI	GGCC	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	101
BsmI	GAATGC	2 cut(s)	284, 322
BsnI	GGCC	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	1 cut(s)	249
BspANI	GGCC	1 cut(s)	266
BspMAI	CTGCAG	1 cut(s)	61
BspMI	ACCTGC	1 cut(s)	340
BspPI	GGATC	1 cut(s)	244
BssMI	GATC	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	34, 196
BstC8I	GCNNGC	2 cut(s)	6, 79
BstKTI	GATC	1 cut(s)	252
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	124
BstV1I	GCAGC	2 cut(s)	43, 71
BsuI	GTATCC	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	266
BtrI	CACGTC	1 cut(s)	262
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	2 cut(s)	6, 79
CaiI	CAGNNNCTG	2 cut(s)	38, 328
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	173, 197
CviJI	RGCY	3 cut(s)	62, 208, 266
CviKI_1	RGCY	3 cut(s)	62, 208, 266
CviQI	GTAC	2 cut(s)	173, 197
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	285
EcoRI	GAATTC	1 cut(s)	292
FaiI	YATR	6 cut(s)	11, 15, 112, 114, 116, 248
Fnu4HI	GCNGC	2 cut(s)	57, 60
Fsp4HI	GCNGC	2 cut(s)	57, 60
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	2 cut(s)	57, 60
HaeIII	GGCC	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	1 cut(s)	325
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188I	TCNGA	2 cut(s)	304, 330
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	1 cut(s)	30
HpyAV	CCTTC	2 cut(s)	16, 338
HpyCH4III	ACNGT	2 cut(s)	34, 196
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	3 cut(s)	59, 77, 320
HpySE526I	ACGT	1 cut(s)	261
Kzo9I	GATC	1 cut(s)	249
LpnPI	CCDG	3 cut(s)	54, 194, 335
Lsp1109I	GCAGC	2 cut(s)	43, 71
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MboII	GAAGA	2 cut(s)	287, 290
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	2 cut(s)	162, 292
MnlI	CCTC	2 cut(s)	278, 351
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	115
Mva1269I	GAATGC	2 cut(s)	284, 322
NdeII	GATC	1 cut(s)	249
NmeAIII	GCCGAG	1 cut(s)	130
PctI	GAATGC	2 cut(s)	284, 322
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	58, 61
PspPI	GGNCC	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	61
PstNI	CAGNNNCTG	2 cut(s)	38, 328
RsaI	GTAC	2 cut(s)	174, 198
RsaNI	GTAC	2 cut(s)	173, 197
RseI	CAYNNNNRTG	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	2 cut(s)	57, 60
Sau3AI	GATC	1 cut(s)	249
Sau96I	GGNCC	1 cut(s)	265
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	6 cut(s)	27, 87, 210, 264, 354, 362
SfcI	CTRYAG	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	115
Sse9I	AATT	2 cut(s)	162, 292
SspMI	CTAG	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	34, 196
TaiI	ACGT	1 cut(s)	264
TasI	AATT	2 cut(s)	162, 292
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseI	GCWGC	2 cut(s)	56, 59
XapI	RAATTY	1 cut(s)	292
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.