Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000373.1

Orthogroup ID

OG0024827

Physical Location & Seq

Genomic Coordinates Reverse (-)

140958 .. 142405

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000373.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgcagtcaagccttcttaattccaccctggaggataagaatctttcagagattccaaattttaggttacttttgaaacaagtggtaaccatggaggtcatacaatggaccacactctggaataagttcaaggatgagtttgagaatgagaagaacatgcttggaggttctttgggtgacaaagcagctgaagatctaaagcagaggataattgaacataatattctagttgtttcaaagtattactcgagggttactttgaagagacttgcagagctgctctgtctaagtatccaggaagctgagaagcatctttcagaaatggttttgtccaaggcgctggtggccaagattgacaggccaataggcataatttgtttccgaactgcgaaagatagtaacaacgttcttaattcgtgggctacaaacttggagaagctgcttgatcttgttgagaagagctgccaccaaatacacaaagaaacaatggttcacaagacagctctgaaggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031595 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

171

Amino Acids

19.63

Weight (kDa)

8.39

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024827)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0118231
rosa_multiflora	Rmu_sc0000373.1_g000027 Rmu_sc0001925.1_g000006

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	117
AclI	AACGTT	1 cut(s)	405
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	117
AgsI	TTSAA	5 cut(s)	76, 130, 215, 237, 262
AjnI	CCWGG	2 cut(s)	27, 294
AluBI	AGCT	6 cut(s)	188, 277, 302, 439, 462, 503
AluI	AGCT	6 cut(s)	188, 277, 302, 439, 462, 503
Alw26I	GTCTC	1 cut(s)	259
Ama87I	CYCGRG	1 cut(s)	247
AoxI	GGCC	2 cut(s)	345, 359
ApeKI	GCWGC	4 cut(s)	185, 277, 439, 462
ApoI	RAATTY	1 cut(s)	58
Asp700I	GAANNNNTTC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	108
BalI	TGGCCA	1 cut(s)	347
BbvI	GCAGC	4 cut(s)	197, 264, 426, 449
BciT130I	CCWGG	2 cut(s)	29, 296
BciVI	GTATCC	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	1 cut(s)	227
BfoI	RGCGCY	1 cut(s)	341
BfuI	GTATCC	1 cut(s)	302
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	4 cut(s)	186, 278, 440, 463
BlsI	GCNGC	4 cut(s)	187, 279, 441, 464
Bme1390I	CCNGG	2 cut(s)	29, 296
Bme18I	GGWCC	1 cut(s)	108
BmeT110I	CYCGRG	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	108
BmrFI	CCNGG	2 cut(s)	29, 296
BmsI	GCATC	1 cut(s)	319
BpmI	CTGGAG	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	27, 90, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse8I	GATNNNNATC	1 cut(s)	39
BseBI	CCWGG	2 cut(s)	29, 296
BseDI	CCNNGG	3 cut(s)	27, 90, 333
BseGI	GGATG	1 cut(s)	139
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	294
BseXI	GCAGC	4 cut(s)	197, 264, 426, 449
BshFI	GGCC	2 cut(s)	347, 361
BsiHKCI	CYCGRG	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	259
BsnI	GGCC	2 cut(s)	347, 361
BsoBI	CYCGRG	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	193, 445
Bsp19I	CCATGG	1 cut(s)	90
BspANI	GGCC	2 cut(s)	347, 361
BspCNI	CTCAG	1 cut(s)	295
BspQI	GCTCTTC	1 cut(s)	452
BssECI	CCNNGG	3 cut(s)	27, 90, 333
BssMI	GATC	2 cut(s)	193, 445
BssT1I	CCWWGG	2 cut(s)	90, 333
Bst2UI	CCWGG	2 cut(s)	29, 296
Bst6I	CTCTTC	2 cut(s)	257, 452
BstDEI	CTNAG	2 cut(s)	287, 303
BstDSI	CCRYGG	1 cut(s)	90
BstEII	GGTNACC	1 cut(s)	85
BstF5I	GGATG	1 cut(s)	139
BstH2I	RGCGCY	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	2 cut(s)	196, 448
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	2 cut(s)	193, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	2 cut(s)	29, 296
BstNSI	RCATGY	1 cut(s)	160
BstPI	GGTNACC	1 cut(s)	85
BstSCI	CCNGG	2 cut(s)	27, 294
BstV1I	GCAGC	4 cut(s)	197, 264, 426, 449
BstX2I	RGATCY	1 cut(s)	193
BstXI	CCANNNNNNTGG	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	302
BsuRI	GGCC	2 cut(s)	347, 361
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	139
CfoI	GCGC	1 cut(s)	340
Cfr13I	GGNCC	1 cut(s)	108
CviAII	CATG	2 cut(s)	91, 157
DdeI	CTNAG	2 cut(s)	287, 303
DpnI	GATC	2 cut(s)	195, 447
DpnII	GATC	2 cut(s)	193, 445
EaeI	YGGCCR	1 cut(s)	345
Eam1104I	CTCTTC	2 cut(s)	257, 452
EarI	CTCTTC	2 cut(s)	257, 452
Eco130I	CCWWGG	2 cut(s)	90, 333
Eco47I	GGWCC	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	247
Eco91I	GGTNACC	1 cut(s)	85
EcoO65I	GGTNACC	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	27, 294
EcoT14I	CCWWGG	2 cut(s)	90, 333
ErhI	CCWWGG	2 cut(s)	90, 333
FaeI	CATG	2 cut(s)	94, 160
FaiI	YATR	5 cut(s)	92, 101, 158, 219, 371
FatI	CATG	2 cut(s)	90, 156
Fnu4HI	GCNGC	4 cut(s)	186, 278, 440, 463
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	4 cut(s)	186, 278, 440, 463
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	4 cut(s)	186, 278, 440, 463
GsuI	CTGGAG	1 cut(s)	50
HaeII	RGCGCY	1 cut(s)	341
HaeIII	GGCC	2 cut(s)	347, 361
HhaI	GCGC	1 cut(s)	340
Hin1II	CATG	2 cut(s)	94, 160
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HinfI	GANTC	2 cut(s)	40, 52
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	4 cut(s)	49, 319, 383, 507
Hpy188III	TCNNGA	1 cut(s)	118
Hpy8I	GTNNAC	1 cut(s)	493
HpyAV	CCTTC	2 cut(s)	23, 502
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	2 cut(s)	4, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	2 cut(s)	287, 303
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	2 cut(s)	94, 160
HspAI	GCGC	1 cut(s)	338
Kzo9I	GATC	2 cut(s)	193, 445
LguI	GCTCTTC	1 cut(s)	452
LpnPI	CCDG	7 cut(s)	14, 41, 103, 281, 308, 326, 343
Lsp1109I	GCAGC	4 cut(s)	197, 264, 426, 449
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	5 cut(s)	66, 85, 176, 253, 398
MalI	GATC	2 cut(s)	195, 447
MboI	GATC	2 cut(s)	193, 445
MboII	GAAGA	4 cut(s)	163, 203, 274, 469
MflI	RGATCY	1 cut(s)	193
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	5 cut(s)	19, 58, 210, 372, 412
MluNI	TGGCCA	1 cut(s)	347
MnlI	CCTC	5 cut(s)	25, 88, 158, 198, 243
Mox20I	TGGCCA	1 cut(s)	347
MroXI	GAANNNNTTC	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	2 cut(s)	18, 411
Msp20I	TGGCCA	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	29, 296
MvaI	CCWGG	2 cut(s)	29, 296
MwoI	GCNNNNNNNGC	1 cut(s)	344
NcoI	CCATGG	1 cut(s)	90
NdeII	GATC	2 cut(s)	193, 445
NlaIII	CATG	2 cut(s)	94, 160
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	1 cut(s)	160
PaeR7I	CTCGAG	1 cut(s)	247
PciSI	GCTCTTC	1 cut(s)	452
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	40, 52
PflMI	CCANNNNNTGG	1 cut(s)	117
PfoI	TCCNGGA	1 cut(s)	294
PkrI	GCNGC	4 cut(s)	187, 279, 441, 464
Psp1406I	AACGTT	1 cut(s)	405
Psp6I	CCWGG	2 cut(s)	27, 294
PspEI	GGTNACC	1 cut(s)	85
PspGI	CCWGG	2 cut(s)	27, 294
PspPI	GGNCC	1 cut(s)	108
PspXI	VCTCGAGB	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	193
PvuII	CAGCTG	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	452
SaqAI	TTAA	2 cut(s)	18, 411
SatI	GCNGC	4 cut(s)	186, 278, 440, 463
Sau3AI	GATC	2 cut(s)	193, 445
Sau96I	GGNCC	1 cut(s)	108
ScrFI	CCNGG	2 cut(s)	29, 296
SfaNI	GCATC	1 cut(s)	319
Sfr274I	CTCGAG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	108
SlaI	CTCGAG	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	5 cut(s)	19, 58, 210, 372, 412
SspI	AATATT	1 cut(s)	223
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	2 cut(s)	27, 294
StyI	CCWWGG	2 cut(s)	90, 333
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	1 cut(s)	248
TasI	AATT	5 cut(s)	19, 58, 210, 372, 412
TfiI	GAWTC	2 cut(s)	40, 52
Tru1I	TTAA	2 cut(s)	18, 411
Tru9I	TTAA	2 cut(s)	18, 411
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	4 cut(s)	185, 277, 439, 462
Tsp45I	GTSAC	1 cut(s)	176
Van91I	CCANNNNNTGG	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	108
XapI	RAATTY	1 cut(s)	58
XceI	RCATGY	1 cut(s)	160
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XhoI	CTCGAG	1 cut(s)	247
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.