Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001925.1

Orthogroup ID

OG0024827

Physical Location & Seq

Genomic Coordinates Forward (+)

27692 .. 28924

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001925.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atggaggtcatacaatggaccacactctggaataagttcaaggatgagtttgagaatgagaagaacatgcttggaggttctttgggtgacaaagcagctgaagatctaaagcagaggataattgaacataatattctagttgtttcaaagtattactcgagggttactttgaagagacttgcagagctgctctgtctaagtatccaggaagctgagaagcatctttcagaaatggttgtgtccaaggcgctggtggccaagattgacaggccaataggcataatttgtttccgaactgcgaaagatagtaacaacgttcttaattcgtgggctacaaacttggagaagctgcttgatcttgttgagaagagctgccaccaaatacacaaagaaacaatggttcacaagacagctcggaaggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031595 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

141

Amino Acids

16.25

Weight (kDa)

8.75

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024827)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0118231
rosa_multiflora	Rmu_sc0000373.1_g000027 Rmu_sc0001925.1_g000006

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	27
AclI	AACGTT	1 cut(s)	315
AcoI	YGGCCR	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	120
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	4 cut(s)	40, 125, 147, 172
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	6 cut(s)	98, 187, 212, 349, 372, 413
AluI	AGCT	6 cut(s)	98, 187, 212, 349, 372, 413
Alw26I	GTCTC	1 cut(s)	169
Ama87I	CYCGRG	1 cut(s)	157
AoxI	GGCC	2 cut(s)	255, 269
ApeKI	GCWGC	4 cut(s)	95, 187, 349, 372
Asp700I	GAANNNNTTC	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	18
BalI	TGGCCA	1 cut(s)	257
BbvI	GCAGC	4 cut(s)	107, 174, 336, 359
BciT130I	CCWGG	1 cut(s)	206
BciVI	GTATCC	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	137
BfoI	RGCGCY	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	212
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	4 cut(s)	96, 188, 350, 373
BlsI	GCNGC	4 cut(s)	97, 189, 351, 374
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	1 cut(s)	18
BmeT110I	CYCGRG	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	229
BsaJI	CCNNGG	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	204
BseXI	GCAGC	4 cut(s)	107, 174, 336, 359
BshFI	GGCC	2 cut(s)	257, 271
BsiHKCI	CYCGRG	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	169
BsnI	GGCC	2 cut(s)	257, 271
BsoBI	CYCGRG	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	103, 355
BspANI	GGCC	2 cut(s)	257, 271
BspCNI	CTCAG	1 cut(s)	205
BspQI	GCTCTTC	1 cut(s)	362
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	2 cut(s)	103, 355
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	206
Bst6I	CTCTTC	2 cut(s)	167, 362
BstDEI	CTNAG	2 cut(s)	197, 213
BstF5I	GGATG	1 cut(s)	49
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	2 cut(s)	106, 358
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	2 cut(s)	103, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	204
BstV1I	GCAGC	4 cut(s)	107, 174, 336, 359
BstX2I	RGATCY	1 cut(s)	103
BstXI	CCANNNNNNTGG	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	257, 271
BtsCI	GGATG	1 cut(s)	49
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	18
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	9 cut(s)	98, 187, 212, 257, 271, 332, 349, 372, 413
CviKI_1	RGCY	9 cut(s)	98, 187, 212, 257, 271, 332, 349, 372, 413
DdeI	CTNAG	2 cut(s)	197, 213
DpnI	GATC	2 cut(s)	105, 357
DpnII	GATC	2 cut(s)	103, 355
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	2 cut(s)	167, 362
EarI	CTCTTC	2 cut(s)	167, 362
Eco130I	CCWWGG	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	1 cut(s)	70
FaiI	YATR	4 cut(s)	11, 68, 129, 281
FatI	CATG	1 cut(s)	66
Fnu4HI	GCNGC	4 cut(s)	96, 188, 350, 373
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	4 cut(s)	96, 188, 350, 373
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	4 cut(s)	96, 188, 350, 373
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	257, 271
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	1 cut(s)	70
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	3 cut(s)	229, 293, 417
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	1 cut(s)	412
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	197, 213
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	70
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	2 cut(s)	103, 355
LguI	GCTCTTC	1 cut(s)	362
LpnPI	CCDG	5 cut(s)	13, 191, 218, 236, 253
Lsp1109I	GCAGC	4 cut(s)	107, 174, 336, 359
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	3 cut(s)	86, 163, 308
MalI	GATC	2 cut(s)	105, 357
MboI	GATC	2 cut(s)	103, 355
MboII	GAAGA	4 cut(s)	73, 113, 184, 379
MflI	RGATCY	1 cut(s)	103
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	3 cut(s)	120, 282, 322
MluNI	TGGCCA	1 cut(s)	257
MnlI	CCTC	3 cut(s)	68, 108, 153
Mox20I	TGGCCA	1 cut(s)	257
MroXI	GAANNNNTTC	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	1 cut(s)	321
Msp20I	TGGCCA	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	2 cut(s)	103, 355
NlaIII	CATG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	86
NspI	RCATGY	1 cut(s)	70
PaeR7I	CTCGAG	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	362
PdmI	GAANNNNTTC	1 cut(s)	35
PflMI	CCANNNNNTGG	1 cut(s)	27
PfoI	TCCNGGA	1 cut(s)	204
PkrI	GCNGC	4 cut(s)	97, 189, 351, 374
Psp1406I	AACGTT	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	18
PspXI	VCTCGAGB	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	98
SapI	GCTCTTC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	4 cut(s)	96, 188, 350, 373
Sau3AI	GATC	2 cut(s)	103, 355
Sau96I	GGNCC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	206
SfaNI	GCATC	1 cut(s)	229
Sfr274I	CTCGAG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	18
SlaI	CTCGAG	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
Sse9I	AATT	3 cut(s)	120, 282, 322
SspI	AATATT	1 cut(s)	133
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	243
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	158
TasI	AATT	3 cut(s)	120, 282, 322
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	4 cut(s)	95, 187, 349, 372
Tsp45I	GTSAC	1 cut(s)	86
Van91I	CCANNNNNTGG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	18
XceI	RCATGY	1 cut(s)	70
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XhoI	CTCGAG	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.