Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000381.1

Orthogroup ID

OG0021629

Physical Location & Seq

Genomic Coordinates Reverse (-)

51140 .. 51719

Gene Structure 580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000381.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgattgcatcgcatgcctgtgtaccaccaaaggtacgttcttttacttggaggctcctaaaaggcatattgcccactaaaggggccctagctaaaaggtgcaagatagatgatttgaattgtgtgttttgtcaccgagctttggaggatgatctgcatgttattcgcaattgcaaaagggtggaggaattttggttttttggaccacttagcttgaagacaaggatggtgcatgctgacaaccttgctgcatgggtacttgatgttgctgaaacactaacccaacaacagcgtgatgttttcttgacgttactatgggcattatggtccgaaagaaacagagtccacaagactacagtgctgaagaagaaacgacccatgactcgctggaaacacccaccgagtgctaggctgaaattgaatgttgatggagcttttcatgcggacagtggcagggaggaattggagcaattattcgagacaaaaatgatacgttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

166

Amino Acids

19.37

Weight (kDa)

9.82

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021629)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000381.1_g000012
rosa_roxburghii	Rroxscaffold_6G00404120
rosa_rugosa	Rorug04G0036500 Rorug05G0359800 Rorug07G0018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	443
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	383
AdeI	CACNNNGTG	1 cut(s)	404
AfaI	GTAC	3 cut(s)	24, 36, 258
AfiI	CCNNNNNNNGG	3 cut(s)	80, 81, 142
AgsI	TTSAA	3 cut(s)	118, 217, 421
AjuI	GAANNNNNNNTTGG	2 cut(s)	22, 54
AluBI	AGCT	4 cut(s)	92, 140, 213, 434
AluI	AGCT	4 cut(s)	92, 140, 213, 434
Alw26I	GTCTC	1 cut(s)	473
AoxI	GGCC	1 cut(s)	84
ApaI	GGGCCC	1 cut(s)	88
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	188
AspS9I	GGNCC	4 cut(s)	84, 85, 203, 327
AsuHPI	GGTGA	1 cut(s)	125
AvaII	GGWCC	2 cut(s)	203, 327
BaeGI	GKGCMC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	2 cut(s)	220, 422
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	2 cut(s)	89, 408
BfmI	CTRYAG	1 cut(s)	354
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme18I	GGWCC	2 cut(s)	203, 327
BmgT120I	GGNCC	4 cut(s)	84, 85, 203, 327
BmiI	GGNNCC	3 cut(s)	56, 85, 86
BmsI	GCATC	1 cut(s)	17
BpiI	GAAGAC	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 81, 142
BseGI	GGATG	2 cut(s)	154, 231
BseLI	CCNNNNNNNGG	3 cut(s)	80, 81, 142
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	235
BshFI	GGCC	1 cut(s)	86
BslI	CCNNNNNNNGG	3 cut(s)	80, 81, 142
BsmAI	GTCTC	1 cut(s)	473
BsnI	GGCC	1 cut(s)	86
Bsp120I	GGGCCC	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	1 cut(s)	443
BspANI	GGCC	1 cut(s)	86
BspLI	GGNNCC	3 cut(s)	56, 85, 86
BssMI	GATC	1 cut(s)	151
Bst4CI	ACNGT	2 cut(s)	358, 449
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	15, 234
BstDEI	CTNAG	2 cut(s)	209, 498
BstF5I	GGATG	2 cut(s)	154, 231
BstKTI	GATC	1 cut(s)	154
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 440
BstNSI	RCATGY	3 cut(s)	17, 161, 236
BstSFI	CTRYAG	1 cut(s)	354
BstSLI	GKGCMC	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	235
BstV2I	GAAGAC	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	2 cut(s)	154, 231
BtsIMutI	CAGTG	2 cut(s)	363, 454
Cac8I	GCNNGC	2 cut(s)	15, 234
Cfr13I	GGNCC	4 cut(s)	84, 85, 203, 327
Csp6I	GTAC	3 cut(s)	23, 35, 257
CspCI	CAANNNNNGTGG	2 cut(s)	195, 230
CviAII	CATG	6 cut(s)	14, 158, 233, 252, 379, 440
CviJI	RGCY	7 cut(s)	55, 86, 92, 140, 213, 412, 434
CviKI_1	RGCY	7 cut(s)	55, 86, 92, 140, 213, 412, 434
CviQI	GTAC	3 cut(s)	23, 35, 257
DdeI	CTNAG	2 cut(s)	209, 498
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
DraIII	CACNNNGTG	1 cut(s)	404
Eco24I	GRGCYC	1 cut(s)	88
Eco47I	GGWCC	2 cut(s)	203, 327
Eco57I	CTGAAG	1 cut(s)	383
EcoO109I	RGGNCCY	2 cut(s)	84, 85
EcoT38I	GRGCYC	1 cut(s)	88
FaeI	CATG	6 cut(s)	17, 161, 236, 255, 382, 443
FaiI	YATR	9 cut(s)	15, 68, 159, 234, 253, 316, 325, 380, 441
FatI	CATG	6 cut(s)	13, 157, 232, 251, 378, 439
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	2 cut(s)	161, 238
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	2 cut(s)	89, 408
GluI	GCNGC	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	86
Hin1II	CATG	6 cut(s)	17, 161, 236, 255, 382, 443
HinfI	GANTC	2 cut(s)	342, 382
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	2 cut(s)	23, 346
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	2 cut(s)	304, 478
Hpy8I	GTNNAC	2 cut(s)	23, 346
HpyCH4III	ACNGT	2 cut(s)	358, 449
HpyCH4IV	ACGT	3 cut(s)	37, 308, 493
HpyCH4V	TGCA	6 cut(s)	8, 102, 157, 174, 232, 251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 440
HpyF3I	CTNAG	2 cut(s)	209, 498
HpySE526I	ACGT	3 cut(s)	37, 308, 493
Hsp92II	CATG	6 cut(s)	17, 161, 236, 255, 382, 443
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	3 cut(s)	60, 431, 466
LpnPI	CCDG	3 cut(s)	31, 373, 439
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	1 cut(s)	17
MaeI	CTAG	2 cut(s)	89, 408
MaeII	ACGT	3 cut(s)	37, 308, 493
MaeIII	GTNAC	2 cut(s)	131, 309
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	3 cut(s)	229, 376, 379
MfeI	CAATTG	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	6 cut(s)	118, 169, 188, 416, 461, 470
MlyI	GAGTC	2 cut(s)	351, 376
MnlI	CCTC	4 cut(s)	45, 139, 178, 451
MslI	CAYNNNNRTG	1 cut(s)	18
MunI	CAATTG	1 cut(s)	169
MwoI	GCNNNNNNNGC	2 cut(s)	14, 440
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	6 cut(s)	17, 161, 236, 255, 382, 443
NlaIV	GGNNCC	3 cut(s)	56, 85, 86
NmuCI	GTSAC	1 cut(s)	131
NspI	RCATGY	3 cut(s)	17, 161, 236
PaeI	GCATGC	2 cut(s)	17, 236
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	2 cut(s)	350, 376
PpsI	GAGTC	2 cut(s)	350, 376
PspN4I	GGNNCC	3 cut(s)	56, 85, 86
PspOMI	GGGCCC	1 cut(s)	84
PspPI	GGNCC	4 cut(s)	84, 85, 203, 327
RsaI	GTAC	3 cut(s)	24, 36, 258
RsaNI	GTAC	3 cut(s)	23, 35, 257
RseI	CAYNNNNRTG	1 cut(s)	18
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	4 cut(s)	84, 85, 203, 327
SchI	GAGTC	2 cut(s)	351, 376
SduI	GDGCHC	1 cut(s)	88
SfaNI	GCATC	1 cut(s)	17
SfcI	CTRYAG	1 cut(s)	354
SinI	GGWCC	2 cut(s)	203, 327
SmiMI	CAYNNNNRTG	1 cut(s)	18
SphI	GCATGC	2 cut(s)	17, 236
Sse9I	AATT	6 cut(s)	118, 169, 188, 416, 461, 470
SsiI	CCGC	1 cut(s)	443
SspMI	CTAG	2 cut(s)	89, 408
TaaI	ACNGT	2 cut(s)	358, 449
TaiI	ACGT	3 cut(s)	40, 311, 496
TaqI	TCGA	1 cut(s)	477
TasI	AATT	6 cut(s)	118, 169, 188, 416, 461, 470
TscAI	CASTG	2 cut(s)	363, 454
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	428
TspRI	CASTG	2 cut(s)	363, 454
VpaK11BI	GGWCC	2 cut(s)	203, 327
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	3 cut(s)	17, 161, 236
XspI	CTAG	2 cut(s)	89, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.