Rorug04G0036500

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0021629
Physical Location & Seq
Forward (+)
5495497 .. 5497105
1609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0036500.1

Sequence Viewer

Length: 261 bp
ATGTTCTTCTTCCTTCTCAGAGGTCAATTCAGCAGCTTCAGTGACCCCCATGGTTATTGTATTGCACGTTCTAATCCAGAGATGGATTCTTGTGTGTGGAGGGATAGCTTCGCTTCTAGGTTCCCGGGATGGCTCCATCTTGGTTGTGGATCTAATCAGCTCCATCAGACCGCCTGCCTCCACAGTAAAGCTTTTGGCCACTGCTTCCACAGCAAGACAGGAGTAGAAGTGAGTGTTTCAGGTTCAGAAAGAAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

86

Amino Acids

9.66

Weight (kDa)

8.38

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021629)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000381.1_g000012
rosa_roxburghii Rroxscaffold_6G00404120
rosa_rugosa Rorug04G0036500 Rorug05G0359800 Rorug07G0018300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 171
AclWI GGATC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 22
AluBI AGCT 5 cut(s) 36, 108, 160, 191, 256
AluI AGCT 5 cut(s) 36, 108, 160, 191, 256
AlwI GGATC 1 cut(s) 157
Ama87I CYCGRG 1 cut(s) 124
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 1 cut(s) 33
AsuC2I CCSGG 2 cut(s) 125, 126
AvaI CYCGRG 1 cut(s) 124
BalI TGGCCA 1 cut(s) 198
BbvI GCAGC 1 cut(s) 45
BccI CCATC 4 cut(s) 76, 123, 144, 171
BcnI CCSGG 2 cut(s) 125, 126
BfaI CTAG 1 cut(s) 117
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
Bme1390I CCNGG 2 cut(s) 125, 126
BmeT110I CYCGRG 1 cut(s) 124
BmiI GGNNCC 2 cut(s) 122, 134
BmrFI CCNGG 2 cut(s) 125, 126
BpuMI CCSGG 2 cut(s) 125, 126
BsaJI CCNNGG 2 cut(s) 49, 124
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
BseDI CCNNGG 2 cut(s) 49, 124
BseGI GGATG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 45
BshFI GGCC 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 124
BsiSI CCGG 1 cut(s) 125
BsnI GGCC 1 cut(s) 198
BsoBI CYCGRG 1 cut(s) 124
Bsp143I GATC 1 cut(s) 149
Bsp19I CCATGG 1 cut(s) 49
BspACI CCGC 1 cut(s) 171
BspANI GGCC 1 cut(s) 198
BspCNI CTCAG 1 cut(s) 30
BspLI GGNNCC 2 cut(s) 122, 134
BspPI GGATC 1 cut(s) 157
BssECI CCNNGG 2 cut(s) 49, 124
BssMI GATC 1 cut(s) 149
BssT1I CCWWGG 1 cut(s) 49
Bst4CI ACNGT 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 17
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 134
BstKTI GATC 1 cut(s) 152
BstMBI GATC 1 cut(s) 149
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstSCI CCNGG 2 cut(s) 123, 124
BstV1I GCAGC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
BsuRI GGCC 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 49
BtsCI GGATG 1 cut(s) 134
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 46, 199
Cac8I GCNNGC 1 cut(s) 175
Cfr9I CCCGGG 1 cut(s) 124
CviAII CATG 1 cut(s) 50
CviJI RGCY 7 cut(s) 36, 108, 133, 160, 191, 198, 256
CviKI_1 RGCY 7 cut(s) 36, 108, 133, 160, 191, 198, 256
DdeI CTNAG 1 cut(s) 17
DpnI GATC 1 cut(s) 151
DpnII GATC 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 1 cut(s) 53
FaiI YATR 1 cut(s) 51
FatI CATG 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 34
FokI GGATG 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 34
FspBI CTAG 1 cut(s) 117
GluI GCNGC 1 cut(s) 34
HaeIII GGCC 1 cut(s) 198
HapII CCGG 1 cut(s) 125
Hin1II CATG 1 cut(s) 53
HindIII AAGCTT 2 cut(s) 189, 254
HinfI GANTC 1 cut(s) 86
HpaII CCGG 1 cut(s) 125
Hpy188I TCNGA 3 cut(s) 20, 168, 247
Hpy188III TCNNGA 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 1 cut(s) 53
Kzo9I GATC 1 cut(s) 149
LmnI GCTCC 2 cut(s) 138, 165
LpnPI CCDG 5 cut(s) 90, 138, 187, 204, 225
Lsp1109I GCAGC 1 cut(s) 45
MaeI CTAG 1 cut(s) 117
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 41
MalI GATC 1 cut(s) 151
MboI GATC 1 cut(s) 149
MflI RGATCY 1 cut(s) 149
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 1 cut(s) 26
MluNI TGGCCA 1 cut(s) 198
MnlI CCTC 3 cut(s) 14, 93, 188
Mox20I TGGCCA 1 cut(s) 198
MscI TGGCCA 1 cut(s) 198
Msp20I TGGCCA 1 cut(s) 198
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 2 cut(s) 125, 126
MwoI GCNNNNNNNGC 1 cut(s) 210
NciI CCSGG 2 cut(s) 125, 126
NcoI CCATGG 1 cut(s) 49
NdeII GATC 1 cut(s) 149
NlaIII CATG 1 cut(s) 53
NlaIV GGNNCC 2 cut(s) 122, 134
NmuCI GTSAC 1 cut(s) 41
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 122, 134
PsrI GAACNNNNNNTAC 2 cut(s) 52, 84
PsuI RGATCY 1 cut(s) 149
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 125, 126
SetI ASST 9 cut(s) 25, 38, 70, 110, 122, 162, 193, 244, 258
SmaI CCCGGG 1 cut(s) 126
Sse9I AATT 1 cut(s) 26
SsiI CCGC 1 cut(s) 171
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 2 cut(s) 123, 124
StyI CCWWGG 1 cut(s) 49
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 1 cut(s) 70
TasI AATT 1 cut(s) 26
TfiI GAWTC 1 cut(s) 86
TscAI CASTG 2 cut(s) 46, 206
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 1 cut(s) 33
Tsp45I GTSAC 1 cut(s) 41
TspMI CCCGGG 1 cut(s) 124
TspRI CASTG 2 cut(s) 46, 206
XcmI CCANNNNNNNNNTGG 1 cut(s) 143
XmaI CCCGGG 1 cut(s) 124
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.