Rmu_sc0000424.1_g000008

protein NRT1 PTR FAMILY 2.13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000424.1
OG0015608
Physical Location & Seq
Forward (+)
29064 .. 31374
2311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000424.1_g000008.1.cds

Sequence Viewer

Length: 1815 bp
atgttgtgggagagaataagaagccctaatttcttctcctccttctgctgctgcttcagatcaaaacccagagctcattctagtccttcttcttcagaggcattactactgttacaaggggaggtagacgatgtggtggttacaagacccggatggaaggccatgccttacattttggggaacgaagcgatcgagaagatggcgacttttgggctcacaacaaacttgatggtgtatctagtgagggagtatcacatggatcaggtttttgctgcaaaccttctcgctctctggacctgtgcttactgtttgttcaccgttctcggtgcttctcttgctgatacatacctcggcaaattccgaacgattcttttcgcttcctttgcaagtcttctgggcatggtgacaataactgtgacagcctttgtgccactactgcgacctccaccttgcgatcttcctcagcattgcatctccaacacaaaaacccaattgtggattttgattatgggtctaagctggttaggcataggcggtgctgggattaggccatgcagccttccctttggaattgatcaatttgattcttcaactgtggaaggtagactagcgatccatagcttcttaaattggtactacacctcagctacattggttgtgttaatcaatctagtcttcgtggtctacattcaagactctgtgagttgggctctgggatttggcatacccaccctgctcatgatgttaggtgcaattcctttatttttggttggatcgaacatttacgtgcgtgtgaagccagaaggaagcatgttcttaagctttgcacaagttcttgttgcggcatacaagaagcgccatcttaagcttctcaatgatgaaagggtacagggagttctcttcgatgcttcattggatgggaatgcagtagtgtcaaagcttcctctatctactcaatctagcttcttgaagaaagcggccctagtagtggataatgaacttaaagaagatggattttctgcaaatgtgtggaggctgtgcaccatgcaacaagttgaagatgtaatatgtgtgttaaaaactctcccaatatgggcttctggaggcatcttcttgatcccttttgtagaggaaggaacatttatggtatcacaagccctaaaaatggaccgtcacatcggaaccaaattccaaatgcctgcaggttcaatcaaaataatatcattgagcatagtaattatatggctcccgttgtacgactctgttatacaaccagccctgaaaaagatcaccaagtatgaagatgggattccaactttaaaaagaataggaatggggtacgttttctcaattctatgtatgttggtggctggattggttgagcaacagagaagaggtttggctacattacatggtgaatcactaaatggggttgcacccatgtcggttttctggctgtttccgcagcttatgctactggggcttagtgaggtgtttggggctcttggacacattgaattttataacagagagtttcctgagaagatgaagagtattgggaactctttgatctatctctgcatggcgggtgcgacttatttgagtagtttggtggtgacctttgtgcatagtgttactggaaagcatggccaatccaactggttggataatgatatcaatgccggcagattggacttcttttacttcttgatagctgggttaggggtgctaaattttgtttactttgtgttttgtgcttgtggatatacttacaaggccagtgtaaaggcagtagagatcgtccctgatgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

604

Amino Acids

66.92

Weight (kDa)

8.1

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015608)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32110 FvH4_4g32110 FvH4_4g32110
malus_domestica MD16G1079900.v1.1 MD16G1080000.v1.1
prunus_persica Prupe.1G266500_v2.0.a1 Prupe.1G266600_v2.0.a1 Prupe.1G266800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0440801
rosa_laevigata RLG00000006152
rosa_multiflora Rmu_sc0000424.1_g000008
rosa_roxburghii Rroxscaffold_5G00381560
rosa_rugosa Rorug04G0328200
rosa_samantha Rh4AG380000 Rh4DG386600
rosa_wichuraiana Rw4G032710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1524
Acc36I ACCTGC 1 cut(s) 1193
AccI GTMKAC 3 cut(s) 126, 604, 684
AciI CCGC 5 cut(s) 534, 842, 977, 1463, 1586
AclWI GGATC 4 cut(s) 267, 607, 781, 1111
AcoI YGGCCR 1 cut(s) 1648
AcsI RAATTY 4 cut(s) 356, 1187, 1517, 1732
AcuI CTGAAG 2 cut(s) 40, 78
AfaI GTAC 4 cut(s) 635, 888, 1256, 1340
AfiI CCNNNNNNNGG 4 cut(s) 495, 988, 1093, 1165
AflII CTTAAG 2 cut(s) 817, 863
AgsI TTSAA 6 cut(s) 591, 692, 970, 1058, 1209, 1517
AjuI GAANNNNNNNTTGG 2 cut(s) 1081, 1113
Alw21I GWGCWC 2 cut(s) 76, 1043
Alw44I GTGCAC 1 cut(s) 1039
AlwI GGATC 4 cut(s) 267, 607, 781, 1111
AoxI GGCC 5 cut(s) 159, 548, 978, 1648, 1776
ApaLI GTGCAC 1 cut(s) 1039
ApeKI GCWGC 5 cut(s) 48, 51, 272, 555, 1465
ApoI RAATTY 4 cut(s) 356, 1187, 1517, 1732
AspLEI GCGC 1 cut(s) 858
AspS9I GGNCC 3 cut(s) 294, 979, 1168
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 5 cut(s) 307, 415, 1282, 1427, 1627
AvaII GGWCC 2 cut(s) 294, 1168
BaeGI GKGCMC 1 cut(s) 1043
BalI TGGCCA 1 cut(s) 1650
BanII GRGCYC 4 cut(s) 76, 216, 712, 1504
BbsI GAAGAC 2 cut(s) 383, 667
Bbv12I GWGCWC 2 cut(s) 76, 1043
BbvCI CCTCAGC 2 cut(s) 462, 643
BbvI GCAGC 5 cut(s) 35, 38, 259, 567, 1477
BccI CCATC 7 cut(s) 147, 193, 223, 867, 911, 1004, 1298
BcgI CGANNNNNNTGC 2 cut(s) 1425, 1459
BclI TGATCA 1 cut(s) 574
BcnI CCSGG 1 cut(s) 150
BfaI CTAG 6 cut(s) 81, 239, 608, 671, 960, 983
BfmI CTRYAG 1 cut(s) 1200
BfoI RGCGCY 1 cut(s) 859
BfrI CTTAAG 2 cut(s) 817, 863
BfuAI ACCTGC 1 cut(s) 1193
BisI GCNGC 7 cut(s) 49, 52, 273, 556, 843, 978, 1466
BlsI GCNGC 7 cut(s) 50, 53, 274, 557, 844, 979, 1467
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 2 cut(s) 294, 1168
BmgT120I GGNCC 3 cut(s) 294, 979, 1168
BmiI GGNNCC 2 cut(s) 1183, 1247
BmrFI CCNGG 1 cut(s) 150
BmrI ACTGGG 1 cut(s) 1487
BmsI GCATC 3 cut(s) 480, 895, 1116
BmuI ACTGGG 1 cut(s) 1487
BpiI GAAGAC 2 cut(s) 383, 667
BplI GAGNNNNNCTC 2 cut(s) 694, 726
BpmI CTGGAG 1 cut(s) 1122
Bpu10I CCTNAGC 2 cut(s) 462, 643
BpuMI CCSGG 1 cut(s) 150
BsaAI YACGTR 1 cut(s) 787
BsaJI CCNNGG 1 cut(s) 349
Bsc4I CCNNNNNNNGG 4 cut(s) 495, 988, 1093, 1165
Bse118I RCCGGY 1 cut(s) 1682
Bse1I ACTGG 4 cut(s) 1482, 1642, 1664, 1779
Bse3DI GCAATG 1 cut(s) 466
BseDI CCNNGG 1 cut(s) 349
BseGI GGATG 2 cut(s) 158, 922
BseLI CCNNNNNNNGG 4 cut(s) 495, 988, 1093, 1165
BseMI GCAATG 1 cut(s) 466
BseMII CTCAG 3 cut(s) 476, 657, 1530
BseNI ACTGG 4 cut(s) 1482, 1642, 1664, 1779
BseRI GAGGAG 1 cut(s) 28
BseSI GKGCMC 1 cut(s) 1043
BseXI GCAGC 5 cut(s) 35, 38, 259, 567, 1477
BseYI CCCAGC 2 cut(s) 539, 1715
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 5 cut(s) 161, 550, 980, 1650, 1778
BsiEI CGRYCG 1 cut(s) 192
BsiHKAI GWGCWC 2 cut(s) 76, 1043
BsiSI CCGG 2 cut(s) 150, 1683
BslFI GGGAC 1 cut(s) 1787
BslI CCNNNNNNNGG 4 cut(s) 495, 988, 1093, 1165
BsmFI GGGAC 1 cut(s) 1787
BsmI GAATGC 1 cut(s) 928
BsnI GGCC 5 cut(s) 161, 550, 980, 1650, 1778
Bsp1286I GDGCHC 5 cut(s) 76, 216, 712, 1043, 1504
BspACI CCGC 5 cut(s) 534, 842, 977, 1463, 1586
BspANI GGCC 5 cut(s) 161, 550, 980, 1650, 1778
BspCNI CTCAG 3 cut(s) 475, 656, 1531
BspHI TCATGA 1 cut(s) 738
BspLI GGNNCC 2 cut(s) 1183, 1247
BspMAI CTGCAG 1 cut(s) 1204
BspMI ACCTGC 1 cut(s) 1193
BspPI GGATC 4 cut(s) 267, 607, 781, 1111
BspTI CTTAAG 2 cut(s) 817, 863
BsrDI GCAATG 1 cut(s) 466
BsrFI RCCGGY 1 cut(s) 1682
BsrI ACTGG 4 cut(s) 1482, 1642, 1664, 1779
BssAI RCCGGY 1 cut(s) 1682
BssECI CCNNGG 1 cut(s) 349
Bst4CI ACNGT 6 cut(s) 111, 308, 319, 415, 595, 1172
Bst6I CTCTTC 3 cut(s) 905, 1387, 1544
BstAFI CTTAAG 2 cut(s) 817, 863
BstAPI GCANNNNNTGC 1 cut(s) 1471
BstBAI YACGTR 1 cut(s) 787
BstC8I GCNNGC 2 cut(s) 1200, 1684
BstDEI CTNAG 5 cut(s) 462, 515, 643, 1484, 1539
BstEII GGTNACC 1 cut(s) 1615
BstF5I GGATG 2 cut(s) 158, 922
BstH2I RGCGCY 1 cut(s) 859
BstHHI GCGC 1 cut(s) 858
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 8 cut(s) 335, 383, 436, 525, 796, 1462, 1471, 1480
BstNSI RCATGY 1 cut(s) 814
BstPI GGTNACC 1 cut(s) 1615
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 1200
BstSLI GKGCMC 1 cut(s) 1043
BstV1I GCAGC 5 cut(s) 35, 38, 259, 567, 1477
BstV2I GAAGAC 2 cut(s) 383, 667
BstXI CCANNNNNNTGG 1 cut(s) 1663
BsuRI GGCC 5 cut(s) 161, 550, 980, 1650, 1778
BtsCI GGATG 2 cut(s) 158, 922
BtsIMutI CAGTG 1 cut(s) 1786
BveI ACCTGC 1 cut(s) 1193
Cac8I GCNNGC 2 cut(s) 1200, 1684
CciI TCATGA 1 cut(s) 738
CfoI GCGC 1 cut(s) 858
Cfr10I RCCGGY 1 cut(s) 1682
Cfr13I GGNCC 3 cut(s) 294, 979, 1168
Csp6I GTAC 4 cut(s) 634, 887, 1255, 1339
CviQI GTAC 4 cut(s) 634, 887, 1255, 1339
DdeI CTNAG 5 cut(s) 462, 515, 643, 1484, 1539
DraI TTTAAA 1 cut(s) 1320
EaeI YGGCCR 1 cut(s) 1648
Eam1104I CTCTTC 3 cut(s) 905, 1387, 1544
EarI CTCTTC 3 cut(s) 905, 1387, 1544
Ecl136II GAGCTC 1 cut(s) 74
Eco24I GRGCYC 4 cut(s) 76, 216, 712, 1504
Eco32I GATATC 1 cut(s) 1675
Eco47I GGWCC 2 cut(s) 294, 1168
Eco53kI GAGCTC 1 cut(s) 74
Eco57I CTGAAG 2 cut(s) 40, 78
Eco91I GGTNACC 1 cut(s) 1615
EcoICRI GAGCTC 1 cut(s) 74
EcoO65I GGTNACC 1 cut(s) 1615
EcoRV GATATC 1 cut(s) 1675
EcoT38I GRGCYC 4 cut(s) 76, 216, 712, 1504
FaqI GGGAC 1 cut(s) 1787
FauI CCCGC 1 cut(s) 1579
FbaI TGATCA 1 cut(s) 574
FblI GTMKAC 3 cut(s) 126, 604, 684
Fnu4HI GCNGC 7 cut(s) 49, 52, 273, 556, 843, 978, 1466
FokI GGATG 2 cut(s) 165, 929
FriOI GRGCYC 4 cut(s) 76, 216, 712, 1504
Fsp4HI GCNGC 7 cut(s) 49, 52, 273, 556, 843, 978, 1466
FspBI CTAG 6 cut(s) 81, 239, 608, 671, 960, 983
GlaI GCGC 1 cut(s) 857
GluI GCNGC 7 cut(s) 49, 52, 273, 556, 843, 978, 1466
GsaI CCCAGC 2 cut(s) 543, 1719
GsuI CTGGAG 1 cut(s) 1122
HaeII RGCGCY 1 cut(s) 859
HaeIII GGCC 5 cut(s) 161, 550, 980, 1650, 1778
HapII CCGG 2 cut(s) 150, 1683
HhaI GCGC 1 cut(s) 858
Hin6I GCGC 1 cut(s) 856
HinP1I GCGC 1 cut(s) 856
HindIII AAGCTT 3 cut(s) 820, 866, 938
HinfI GANTC 6 cut(s) 367, 584, 695, 1259, 1309, 1418
HpaII CCGG 2 cut(s) 150, 1683
HphI GGTGA 5 cut(s) 307, 415, 1282, 1427, 1627
Hpy166II GTNNAC 6 cut(s) 127, 315, 605, 685, 1041, 1741
Hpy188I TCNGA 4 cut(s) 59, 97, 362, 1181
Hpy188III TCNNGA 9 cut(s) 193, 292, 692, 739, 967, 1101, 1114, 1538, 1708
Hpy8I GTNNAC 6 cut(s) 127, 315, 605, 685, 1041, 1741
HpyAV CCTTC 8 cut(s) 52, 96, 151, 290, 569, 593, 797, 1127
HpyCH4III ACNGT 6 cut(s) 111, 308, 319, 415, 595, 1172
HpyCH4IV ACGT 2 cut(s) 786, 1341
HpyF10VI GCNNNNNNNGC 8 cut(s) 335, 383, 436, 525, 796, 1462, 1471, 1480
HpyF3I CTNAG 5 cut(s) 462, 515, 643, 1484, 1539
HpySE526I ACGT 2 cut(s) 786, 1341
HspAI GCGC 1 cut(s) 856
KroI GCCGGC 1 cut(s) 1682
KroNI GCCGGC 1 cut(s) 1684
Ksp22I TGATCA 1 cut(s) 574
LmnI GCTCC 1 cut(s) 1251
Lsp1109I GCAGC 5 cut(s) 35, 38, 259, 567, 1477
LweI GCATC 3 cut(s) 480, 895, 1116
MaeI CTAG 6 cut(s) 81, 239, 608, 671, 960, 983
MaeII ACGT 2 cut(s) 786, 1341
MaeIII GTNAC 7 cut(s) 111, 139, 403, 415, 1172, 1615, 1633
MfeI CAATTG 1 cut(s) 491
MhlI GDGCHC 5 cut(s) 76, 216, 712, 1043, 1504
MlsI TGGCCA 1 cut(s) 1650
MluNI TGGCCA 1 cut(s) 1650
MlyI GAGTC 2 cut(s) 689, 1253
MmeI TCCRAC 5 cut(s) 501, 751, 1337, 1644, 1680
Mox20I TGGCCA 1 cut(s) 1650
MroNI GCCGGC 1 cut(s) 1682
MscI TGGCCA 1 cut(s) 1650
MseI TTAA 8 cut(s) 626, 662, 818, 864, 1002, 1076, 1319, 1813
MslI CAYNNNNRTG 1 cut(s) 785
Msp20I TGGCCA 1 cut(s) 1650
MspCI CTTAAG 2 cut(s) 817, 863
MspI CCGG 2 cut(s) 150, 1683
MspR9I CCNGG 1 cut(s) 150
MunI CAATTG 1 cut(s) 491
Mva1269I GAATGC 1 cut(s) 928
MwoI GCNNNNNNNGC 8 cut(s) 335, 383, 436, 525, 796, 1462, 1471, 1480
NaeI GCCGGC 1 cut(s) 1684
NciI CCSGG 1 cut(s) 150
NgoMIV GCCGGC 1 cut(s) 1682
NlaIV GGNNCC 2 cut(s) 1183, 1247
NmeAIII GCCGAG 1 cut(s) 330
NmuCI GTSAC 4 cut(s) 403, 415, 1172, 1615
NspI RCATGY 1 cut(s) 814
PagI TCATGA 1 cut(s) 738
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PctI GAATGC 1 cut(s) 928
PdiI GCCGGC 1 cut(s) 1684
PfeI GAWTC 4 cut(s) 367, 584, 1309, 1418
PkrI GCNGC 7 cut(s) 50, 53, 274, 557, 844, 979, 1467
Ple19I CGATCG 1 cut(s) 192
PleI GAGTC 2 cut(s) 689, 1253
PpsI GAGTC 2 cut(s) 689, 1253
Ppu21I YACGTR 1 cut(s) 787
PsiI TTATAA 1 cut(s) 1524
Psp124BI GAGCTC 1 cut(s) 76
PspEI GGTNACC 1 cut(s) 1615
PspFI CCCAGC 2 cut(s) 539, 1715
PspN4I GGNNCC 2 cut(s) 1183, 1247
PspPI GGNCC 3 cut(s) 294, 979, 1168
PsrI GAACNNNNNNTAC 2 cut(s) 879, 911
PstI CTGCAG 1 cut(s) 1204
PvuI CGATCG 1 cut(s) 192
RsaI GTAC 4 cut(s) 635, 888, 1256, 1340
RsaNI GTAC 4 cut(s) 634, 887, 1255, 1339
RseI CAYNNNNRTG 1 cut(s) 785
SacI GAGCTC 1 cut(s) 76
SaqAI TTAA 8 cut(s) 626, 662, 818, 864, 1002, 1076, 1319, 1813
SatI GCNGC 7 cut(s) 49, 52, 273, 556, 843, 978, 1466
Sau96I GGNCC 3 cut(s) 294, 979, 1168
SbfI CCTGCAGG 1 cut(s) 1204
SchI GAGTC 2 cut(s) 689, 1253
ScrFI CCNGG 1 cut(s) 150
SdaI CCTGCAGG 1 cut(s) 1204
SduI GDGCHC 5 cut(s) 76, 216, 712, 1043, 1504
SfaNI GCATC 3 cut(s) 480, 895, 1116
SfcI CTRYAG 1 cut(s) 1200
SinI GGWCC 2 cut(s) 294, 1168
SmiMI CAYNNNNRTG 1 cut(s) 785
SmlI CTYRAG 2 cut(s) 817, 863
SmoI CTYRAG 2 cut(s) 817, 863
Sse8387I CCTGCAGG 1 cut(s) 1204
SsiI CCGC 5 cut(s) 534, 842, 977, 1463, 1586
SspMI CTAG 6 cut(s) 81, 239, 608, 671, 960, 983
SstI GAGCTC 1 cut(s) 76
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 6 cut(s) 111, 308, 319, 415, 595, 1172
TaiI ACGT 2 cut(s) 789, 1344
TaqI TCGA 3 cut(s) 192, 776, 903
TauI GCSGC 2 cut(s) 845, 980
TfiI GAWTC 4 cut(s) 367, 584, 1309, 1418
Tru1I TTAA 8 cut(s) 626, 662, 818, 864, 1002, 1076, 1319, 1813
Tru9I TTAA 8 cut(s) 626, 662, 818, 864, 1002, 1076, 1319, 1813
TscAI CASTG 1 cut(s) 1786
TseFI GTSAC 4 cut(s) 403, 415, 1172, 1615
TseI GCWGC 5 cut(s) 48, 51, 272, 555, 1465
Tsp45I GTSAC 4 cut(s) 403, 415, 1172, 1615
TspDTI ATGAA 5 cut(s) 894, 900, 1011, 1314, 1562
TspRI CASTG 1 cut(s) 1786
Vha464I CTTAAG 2 cut(s) 817, 863
VneI GTGCAC 1 cut(s) 1039
VpaK11BI GGWCC 2 cut(s) 294, 1168
XapI RAATTY 4 cut(s) 356, 1187, 1517, 1732
XceI RCATGY 1 cut(s) 814
XmiI GTMKAC 3 cut(s) 126, 604, 684
XspI CTAG 6 cut(s) 81, 239, 608, 671, 960, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.