Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000435.1

Orthogroup ID

OG0025482

Physical Location & Seq

Genomic Coordinates Forward (+)

120064 .. 121180

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000435.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgctttaccagcatgcccagaaaaacttgcttggagttgttgtaaaagcaccttcttctagtaataagcaacaaattcccctggctagtggtaacttacaagataccaaaaacactgattcttctcagggttactacatggtagtgaaatctaaacgtgcttttgaagaagagtattgtacctctgtttcttcacgcaaaggatcaggtgtcatcaacataaaattaccacaccatggtgctgctgctggggtgagatacgaggttagaggagccgatatcacagacttctcattcatatgcagtagcaaaataaagattgaccaagttcagcttcttgaggacagtagcagtgctgcttactccaagacagtgcaactgctgttggacacaaaacctaaaggggaggagtaccctccagccttagatccattgaaagatcttaagttgaaagacatgcatcttgtggaaacatactacaaatggacaaacttagtgcagaagatggcaaagaataagtgcgatggatgtattaaattggaggaacacattaagttagcaagagagatagggaaattcaccgtcaaaatgttgaatggcatgcacagaaaaaagaatagggaaattcacatcgcgaaactgatcggagagagaaggagaagagggagacaagaagaagaagaagaatctgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000288 GO:0000291 GO:0000956 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0015672 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019439 GO:0030001 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0035864 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055087 GO:0060255 GO:0065007 GO:0070035 GO:0070478 GO:0071704 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

231

Amino Acids

26.11

Weight (kDa)

9.32

Isoelectric Point (pI)

58.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025482)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000435.1_g000028
rosa_samantha	Rh5BG463800 Rh5CG485700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	236
AccII	CGCG	1 cut(s)	635
AclWI	GGATC	2 cut(s)	211, 422
AcsI	RAATTY	3 cut(s)	75, 575, 624
AfaI	GTAC	2 cut(s)	181, 413
AfiI	CCNNNNNNNGG	1 cut(s)	236
AflII	CTTAAG	1 cut(s)	443
AgsI	TTSAA	4 cut(s)	167, 436, 451, 595
AjnI	CCWGG	1 cut(s)	81
AjuI	GAANNNNNNNTTGG	2 cut(s)	318, 350
AleI	CACNNNNGTG	1 cut(s)	237
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	661
AlwI	GGATC	2 cut(s)	211, 422
ApeKI	GCWGC	3 cut(s)	242, 245, 356
ApoI	RAATTY	3 cut(s)	75, 575, 624
AsuHPI	GGTGA	2 cut(s)	265, 571
BbvI	GCAGC	3 cut(s)	229, 232, 343
BccI	CCATC	2 cut(s)	499, 518
BciT130I	CCWGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	661
BfaI	CTAG	2 cut(s)	60, 87
BfrI	CTTAAG	1 cut(s)	443
BglII	AGATCT	1 cut(s)	439
BisI	GCNGC	3 cut(s)	243, 246, 357
BlsI	GCNGC	3 cut(s)	244, 247, 358
Bme1390I	CCNGG	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	469
BpmI	CTGGAG	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	359
BsaJI	CCNNGG	2 cut(s)	81, 235
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	81, 235
BseGI	GGATG	1 cut(s)	533
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	140
BseRI	GAGGAG	2 cut(s)	285, 422
BseXI	GCAGC	3 cut(s)	229, 232, 343
BseYI	CCCAGC	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	518
Bsh1236I	CGCG	1 cut(s)	635
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	661
Bsp143I	GATC	4 cut(s)	203, 427, 439, 642
Bsp19I	CCATGG	1 cut(s)	235
Bsp68I	TCGCGA	1 cut(s)	635
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	635
BspLI	GGNNCC	1 cut(s)	274
BspPI	GGATC	2 cut(s)	211, 422
BspTI	CTTAAG	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	81, 235
BssMI	GATC	4 cut(s)	203, 427, 439, 642
BssT1I	CCWWGG	1 cut(s)	235
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	3 cut(s)	347, 373, 583
Bst6I	CTCTTC	2 cut(s)	165, 655
BstAFI	CTTAAG	1 cut(s)	443
BstC8I	GCNNGC	2 cut(s)	15, 602
BstDEI	CTNAG	3 cut(s)	126, 424, 493
BstDSI	CCRYGG	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	533
BstFNI	CGCG	1 cut(s)	635
BstKTI	GATC	4 cut(s)	206, 430, 442, 645
BstMAI	GTCTC	1 cut(s)	661
BstMBI	GATC	4 cut(s)	203, 427, 439, 642
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	3 cut(s)	17, 460, 604
BstSCI	CCNGG	1 cut(s)	81
BstUI	CGCG	1 cut(s)	635
BstV1I	GCAGC	3 cut(s)	229, 232, 343
BstX2I	RGATCY	2 cut(s)	427, 439
BstYI	RGATCY	2 cut(s)	427, 439
BtgI	CCRYGG	1 cut(s)	235
BtgZI	GCGATG	2 cut(s)	537, 616
BtsCI	GGATG	1 cut(s)	533
BtsI	GCAGTG	1 cut(s)	358
BtsIMutI	CAGTG	3 cut(s)	114, 358, 378
BtuMI	TCGCGA	1 cut(s)	635
Cac8I	GCNNGC	2 cut(s)	15, 602
Csp6I	GTAC	2 cut(s)	180, 412
CviAII	CATG	5 cut(s)	14, 139, 236, 457, 601
CviJI	RGCY	4 cut(s)	86, 275, 334, 422
CviKI_1	RGCY	4 cut(s)	86, 275, 334, 422
CviQI	GTAC	2 cut(s)	180, 412
DdeI	CTNAG	3 cut(s)	126, 424, 493
DpnI	GATC	4 cut(s)	205, 429, 441, 644
DpnII	GATC	4 cut(s)	203, 427, 439, 642
Eam1104I	CTCTTC	2 cut(s)	165, 655
EarI	CTCTTC	2 cut(s)	165, 655
Eco130I	CCWWGG	1 cut(s)	235
Eco32I	GATATC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	81
EcoRV	GATATC	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	5 cut(s)	17, 142, 239, 460, 604
FaiI	YATR	9 cut(s)	15, 140, 221, 237, 299, 301, 458, 475, 602
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FatI	CATG	5 cut(s)	13, 138, 235, 456, 600
FauNDI	CATATG	1 cut(s)	299
Fnu4HI	GCNGC	3 cut(s)	243, 246, 357
FokI	GGATG	1 cut(s)	540
Fsp4HI	GCNGC	3 cut(s)	243, 246, 357
FspBI	CTAG	2 cut(s)	60, 87
GluI	GCNGC	3 cut(s)	243, 246, 357
GsaI	CCCAGC	1 cut(s)	252
GsuI	CTGGAG	1 cut(s)	402
Hin1II	CATG	5 cut(s)	17, 142, 239, 460, 604
HinfI	GANTC	2 cut(s)	119, 686
HphI	GGTGA	2 cut(s)	265, 571
Hpy188I	TCNGA	1 cut(s)	647
Hpy188III	TCNNGA	2 cut(s)	338, 634
HpyAV	CCTTC	2 cut(s)	63, 648
HpyCH4III	ACNGT	3 cut(s)	347, 373, 583
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	5 cut(s)	303, 376, 460, 499, 604
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	3 cut(s)	126, 424, 493
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	5 cut(s)	17, 142, 239, 460, 604
Kzo9I	GATC	4 cut(s)	203, 427, 439, 642
LmnI	GCTCC	1 cut(s)	272
LpnPI	CCDG	9 cut(s)	23, 32, 68, 95, 113, 192, 234, 432, 675
Lsp1109I	GCAGC	3 cut(s)	229, 232, 343
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	2 cut(s)	60, 87
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	2 cut(s)	92, 131
MalI	GATC	4 cut(s)	205, 429, 441, 644
MboI	GATC	4 cut(s)	203, 427, 439, 642
MflI	RGATCY	2 cut(s)	427, 439
MluCI	AATT	5 cut(s)	75, 224, 536, 575, 624
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	8 cut(s)	193, 256, 263, 334, 400, 426, 535, 656
Mph1103I	ATGCAT	1 cut(s)	462
MseI	TTAA	3 cut(s)	444, 534, 552
MslI	CAYNNNNRTG	3 cut(s)	143, 237, 298
MspCI	CTTAAG	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	635
MwoI	GCNNNNNNNGC	1 cut(s)	10
NcoI	CCATGG	1 cut(s)	235
NdeI	CATATG	1 cut(s)	299
NdeII	GATC	4 cut(s)	203, 427, 439, 642
NlaIII	CATG	5 cut(s)	17, 142, 239, 460, 604
NlaIV	GGNNCC	1 cut(s)	274
NruI	TCGCGA	1 cut(s)	635
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	3 cut(s)	17, 460, 604
OliI	CACNNNNGTG	1 cut(s)	237
PaeI	GCATGC	2 cut(s)	17, 604
PfeI	GAWTC	2 cut(s)	119, 686
PflMI	CCANNNNNTGG	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	244, 247, 358
Psp6I	CCWGG	1 cut(s)	81
PspFI	CCCAGC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	274
PsuI	RGATCY	2 cut(s)	427, 439
RruI	TCGCGA	1 cut(s)	635
RsaI	GTAC	2 cut(s)	181, 413
RsaNI	GTAC	2 cut(s)	180, 412
RseI	CAYNNNNRTG	3 cut(s)	143, 237, 298
SaqAI	TTAA	3 cut(s)	444, 534, 552
SatI	GCNGC	3 cut(s)	243, 246, 357
Sau3AI	GATC	4 cut(s)	203, 427, 439, 642
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	7 cut(s)	55, 160, 185, 211, 267, 336, 400
SfaNI	GCATC	1 cut(s)	469
SmiMI	CAYNNNNRTG	3 cut(s)	143, 237, 298
SmlI	CTYRAG	2 cut(s)	338, 443
SmoI	CTYRAG	2 cut(s)	338, 443
SphI	GCATGC	2 cut(s)	17, 604
Sse9I	AATT	5 cut(s)	75, 224, 536, 575, 624
SspMI	CTAG	2 cut(s)	60, 87
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	3 cut(s)	347, 373, 583
TaiI	ACGT	1 cut(s)	160
TasI	AATT	5 cut(s)	75, 224, 536, 575, 624
TfiI	GAWTC	2 cut(s)	119, 686
Tru1I	TTAA	3 cut(s)	444, 534, 552
Tru9I	TTAA	3 cut(s)	444, 534, 552
TscAI	CASTG	3 cut(s)	121, 358, 378
TseI	GCWGC	3 cut(s)	242, 245, 356
TspDTI	ATGAA	1 cut(s)	286
TspRI	CASTG	3 cut(s)	121, 358, 378
Van91I	CCANNNNNTGG	1 cut(s)	236
Vha464I	CTTAAG	1 cut(s)	443
XapI	RAATTY	3 cut(s)	75, 575, 624
XceI	RCATGY	3 cut(s)	17, 460, 604
XspI	CTAG	2 cut(s)	60, 87
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.