Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0025482

Physical Location & Seq

Genomic Coordinates Reverse (-)

67765765 .. 67769001

Gene Structure 3237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG485700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCTTTACCAGCATGCCCAGAAAAACTTGCTTGGAGTTGTTGTAAAAGCACCTTCTTCTAGTAATAAGCAACACATCGTTCTAGTGCTGAAACCTGAACTACCAGCGACAATCCAAATTCCCCTGGCTAGTGGTAACTTACAAGATACCAAAAACACTGATTCTTCTCAGGGTTACTACATGGTAGTGAAATCTAAACGTGCTTTTGAAGAAGAGTGTTGTACCTCTGTTTCTTCACGCAAAGGATCAGGTGTCATCAACATAAAATTACCACACCATGGTGCTGCTGCTGGGGTGAGATACGAGGTTAGAGGAGCCGATATCACAGACTTCTCATTCATATGCAGTAGCAAAATAAAGATTGACCAAGTTCAGCTTCTTGAGGACAGTAGCAGTGCTGCTTACTCCAAGACAGTGCAACTGCTGTTGGACACAAAACCTAAAGGGGAGGAGTACCCTCCAGCCTTAGATCCATTGAAAGATTGCCCGACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000288 GO:0000291 GO:0000956 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0015672 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019439 GO:0030001 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0035864 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055087 GO:0060255 GO:0065007 GO:0070035 GO:0070478 GO:0071704 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

164

Amino Acids

17.83

Weight (kDa)

8.3

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025482)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000435.1_g000028
rosa_samantha	Rh5BG463800 Rh5CG485700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	278
AclWI	GGATC	2 cut(s)	253, 464
AcsI	RAATTY	1 cut(s)	117
AfaI	GTAC	2 cut(s)	223, 455
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	209, 478
AjnI	CCWGG	1 cut(s)	123
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
AleI	CACNNNNGTG	1 cut(s)	279
AluBI	AGCT	1 cut(s)	376
AluI	AGCT	1 cut(s)	376
AlwI	GGATC	2 cut(s)	253, 464
ApeKI	GCWGC	3 cut(s)	284, 287, 398
ApoI	RAATTY	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	307
BbvI	GCAGC	3 cut(s)	271, 274, 385
BciT130I	CCWGG	1 cut(s)	125
BfaI	CTAG	3 cut(s)	60, 83, 129
BisI	GCNGC	3 cut(s)	285, 288, 399
BlsI	GCNGC	3 cut(s)	286, 289, 400
Bme1390I	CCNGG	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	125
BpmI	CTGGAG	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	123, 277
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	123, 277
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMII	CTCAG	1 cut(s)	182
BseRI	GAGGAG	2 cut(s)	327, 464
BseXI	GCAGC	3 cut(s)	271, 274, 385
BseYI	CCCAGC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	278
Bsp143I	GATC	2 cut(s)	245, 469
Bsp19I	CCATGG	1 cut(s)	277
BspCNI	CTCAG	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	316
BspPI	GGATC	2 cut(s)	253, 464
BssECI	CCNNGG	2 cut(s)	123, 277
BssMI	GATC	2 cut(s)	245, 469
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	2 cut(s)	389, 415
Bst6I	CTCTTC	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	168, 466
BstDSI	CCRYGG	1 cut(s)	277
BstKTI	GATC	2 cut(s)	248, 472
BstMBI	GATC	2 cut(s)	245, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	125
BstNSI	RCATGY	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	123
BstV1I	GCAGC	3 cut(s)	271, 274, 385
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BtgI	CCRYGG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	3 cut(s)	156, 400, 420
Cac8I	GCNNGC	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	222, 454
CviAII	CATG	3 cut(s)	14, 181, 278
CviJI	RGCY	4 cut(s)	128, 317, 376, 464
CviKI_1	RGCY	4 cut(s)	128, 317, 376, 464
CviQI	GTAC	2 cut(s)	222, 454
DdeI	CTNAG	2 cut(s)	168, 466
DpnI	GATC	2 cut(s)	247, 471
DpnII	GATC	2 cut(s)	245, 469
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	277
Eco32I	GATATC	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	123
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	3 cut(s)	17, 184, 281
FaiI	YATR	6 cut(s)	15, 182, 263, 279, 341, 343
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FatI	CATG	3 cut(s)	13, 180, 277
FauNDI	CATATG	1 cut(s)	341
Fnu4HI	GCNGC	3 cut(s)	285, 288, 399
Fsp4HI	GCNGC	3 cut(s)	285, 288, 399
FspBI	CTAG	3 cut(s)	60, 83, 129
GluI	GCNGC	3 cut(s)	285, 288, 399
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	444
Hin1II	CATG	3 cut(s)	17, 184, 281
HinfI	GANTC	1 cut(s)	161
HphI	GGTGA	1 cut(s)	307
Hpy188III	TCNNGA	1 cut(s)	380
Hpy99I	CGWCG	1 cut(s)	493
HpyAV	CCTTC	1 cut(s)	63
HpyCH4III	ACNGT	2 cut(s)	389, 415
HpyCH4IV	ACGT	2 cut(s)	199, 491
HpyCH4V	TGCA	2 cut(s)	345, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	168, 466
HpySE526I	ACGT	2 cut(s)	199, 491
Hsp92II	CATG	3 cut(s)	17, 184, 281
Kzo9I	GATC	2 cut(s)	245, 469
LmnI	GCTCC	1 cut(s)	314
Lsp1109I	GCAGC	3 cut(s)	271, 274, 385
MaeI	CTAG	3 cut(s)	60, 83, 129
MaeII	ACGT	2 cut(s)	199, 491
MaeIII	GTNAC	2 cut(s)	134, 173
MalI	GATC	2 cut(s)	247, 471
MboI	GATC	2 cut(s)	245, 469
MboII	GAAGA	5 cut(s)	48, 156, 221, 224, 225
MflI	RGATCY	1 cut(s)	469
MluCI	AATT	2 cut(s)	117, 266
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	6 cut(s)	235, 298, 305, 376, 442, 468
MslI	CAYNNNNRTG	3 cut(s)	185, 279, 340
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	10
NcoI	CCATGG	1 cut(s)	277
NdeI	CATATG	1 cut(s)	341
NdeII	GATC	2 cut(s)	245, 469
NlaIII	CATG	3 cut(s)	17, 184, 281
NlaIV	GGNNCC	1 cut(s)	316
NspI	RCATGY	1 cut(s)	17
OliI	CACNNNNGTG	1 cut(s)	279
PaeI	GCATGC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	161
PflMI	CCANNNNNTGG	1 cut(s)	278
PkrI	GCNGC	3 cut(s)	286, 289, 400
Psp6I	CCWGG	1 cut(s)	123
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	469
RsaI	GTAC	2 cut(s)	223, 455
RsaNI	GTAC	2 cut(s)	222, 454
RseI	CAYNNNNRTG	3 cut(s)	185, 279, 340
SatI	GCNGC	3 cut(s)	285, 288, 399
Sau3AI	GATC	2 cut(s)	245, 469
ScrFI	CCNGG	1 cut(s)	125
SetI	ASST	9 cut(s)	55, 97, 202, 227, 253, 309, 378, 442, 494
SmiMI	CAYNNNNRTG	3 cut(s)	185, 279, 340
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
SphI	GCATGC	1 cut(s)	17
Sse9I	AATT	2 cut(s)	117, 266
SspMI	CTAG	3 cut(s)	60, 83, 129
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	2 cut(s)	389, 415
TaiI	ACGT	2 cut(s)	202, 494
TasI	AATT	2 cut(s)	117, 266
TfiI	GAWTC	1 cut(s)	161
TscAI	CASTG	3 cut(s)	163, 400, 420
TseI	GCWGC	3 cut(s)	284, 287, 398
TspDTI	ATGAA	1 cut(s)	328
TspRI	CASTG	3 cut(s)	163, 400, 420
Van91I	CCANNNNNTGG	1 cut(s)	278
XapI	RAATTY	1 cut(s)	117
XceI	RCATGY	1 cut(s)	17
XspI	CTAG	3 cut(s)	60, 83, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.