Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0025482

Physical Location & Seq

Genomic Coordinates Reverse (-)

74061664 .. 74071497

Gene Structure 9834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG463800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGACTTTTGCCGCATTTCACTTGTCGCCGAATCATACAACGAAACCAGACATGCCCAGAAAAACTTGCTTGGAGTTGTTGTAAAAGCACCTTCTTCTAGTAATAAGCAACACATCGTTCTAGTGCTGAAACCTGAACTACCAGCGACAATCCAAATTCCCCTGGCTAGTGGTAACTTACAAGATACCAAAAACACTGATTCTTCTCAGGGTTACTACATGGTAGTGAAATCTAAACGTGCTTTTGAAGAAGAGTGTTGTACCTCTGTTTCTTCACGCAAAGGATCAGGTGTCATCAACATAAAATTACCACACCATGGTGCTGCTGCTGGGGTGAGATACGAGGTTAGAGGAGCCGATATCACAGACTTCTCATTCATATGCAGTAGCAAAATAAAGATTGACCAAGTTCAGCTTCTTGAGGACAGTAGCAGTGCTGCTTACTCCAAGACAGTGCAACTGCTGTTGGACACAAAACCTAAAGGGGAGGAGTACCCTCCAGCCTTAGATCCATTGAAAGGTATATGTATTTCACAATCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000288 GO:0000291 GO:0000956 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0015672 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019439 GO:0030001 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0035864 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055087 GO:0060255 GO:0065007 GO:0070035 GO:0070478 GO:0071704 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

181

Amino Acids

19.7

Weight (kDa)

8.23

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025482)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000435.1_g000028
rosa_samantha	Rh5BG463800 Rh5CG485700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	317
AciI	CCGC	1 cut(s)	13
AclWI	GGATC	2 cut(s)	292, 503
AcsI	RAATTY	1 cut(s)	156
AfaI	GTAC	2 cut(s)	262, 494
AfiI	CCNNNNNNNGG	2 cut(s)	317, 518
AgsI	TTSAA	2 cut(s)	248, 517
AjnI	CCWGG	1 cut(s)	162
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AleI	CACNNNNGTG	1 cut(s)	318
AluBI	AGCT	1 cut(s)	415
AluI	AGCT	1 cut(s)	415
AlwI	GGATC	2 cut(s)	292, 503
ApeKI	GCWGC	3 cut(s)	323, 326, 437
ApoI	RAATTY	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	346
BbvI	GCAGC	3 cut(s)	310, 313, 424
BciT130I	CCWGG	1 cut(s)	164
BfaI	CTAG	3 cut(s)	99, 122, 168
BisI	GCNGC	4 cut(s)	13, 324, 327, 438
BlsI	GCNGC	4 cut(s)	14, 325, 328, 439
Bme1390I	CCNGG	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	355
BmrFI	CCNGG	1 cut(s)	164
BpmI	CTGGAG	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	162, 316
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 518
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	2 cut(s)	162, 316
BseLI	CCNNNNNNNGG	2 cut(s)	317, 518
BseMII	CTCAG	1 cut(s)	221
BseRI	GAGGAG	2 cut(s)	366, 503
BseXI	GCAGC	3 cut(s)	310, 313, 424
BseYI	CCCAGC	1 cut(s)	329
BslI	CCNNNNNNNGG	2 cut(s)	317, 518
Bsp143I	GATC	2 cut(s)	284, 508
Bsp19I	CCATGG	1 cut(s)	316
BspACI	CCGC	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	355
BspPI	GGATC	2 cut(s)	292, 503
BssECI	CCNNGG	2 cut(s)	162, 316
BssMI	GATC	2 cut(s)	284, 508
BssT1I	CCWWGG	1 cut(s)	316
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	2 cut(s)	428, 454
Bst6I	CTCTTC	1 cut(s)	246
BstDEI	CTNAG	2 cut(s)	207, 505
BstDSI	CCRYGG	1 cut(s)	316
BstKTI	GATC	2 cut(s)	287, 511
BstMBI	GATC	2 cut(s)	284, 508
BstNI	CCWGG	1 cut(s)	164
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	162
BstV1I	GCAGC	3 cut(s)	310, 313, 424
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BtgI	CCRYGG	1 cut(s)	316
BtsI	GCAGTG	1 cut(s)	439
BtsIMutI	CAGTG	3 cut(s)	195, 439, 459
Csp6I	GTAC	2 cut(s)	261, 493
CviAII	CATG	3 cut(s)	53, 220, 317
CviJI	RGCY	4 cut(s)	167, 356, 415, 503
CviKI_1	RGCY	4 cut(s)	167, 356, 415, 503
CviQI	GTAC	2 cut(s)	261, 493
DdeI	CTNAG	2 cut(s)	207, 505
DpnI	GATC	2 cut(s)	286, 510
DpnII	GATC	2 cut(s)	284, 508
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	316
Eco32I	GATATC	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	162
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	3 cut(s)	56, 223, 320
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FatI	CATG	3 cut(s)	52, 219, 316
FauNDI	CATATG	1 cut(s)	380
Fnu4HI	GCNGC	4 cut(s)	13, 324, 327, 438
Fsp4HI	GCNGC	4 cut(s)	13, 324, 327, 438
FspBI	CTAG	3 cut(s)	99, 122, 168
GluI	GCNGC	4 cut(s)	13, 324, 327, 438
GsaI	CCCAGC	1 cut(s)	333
GsuI	CTGGAG	1 cut(s)	483
Hin1II	CATG	3 cut(s)	56, 223, 320
HinfI	GANTC	2 cut(s)	32, 200
HphI	GGTGA	1 cut(s)	346
Hpy188III	TCNNGA	1 cut(s)	419
HpyAV	CCTTC	1 cut(s)	102
HpyCH4III	ACNGT	2 cut(s)	428, 454
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	2 cut(s)	384, 457
HpyF3I	CTNAG	2 cut(s)	207, 505
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	3 cut(s)	56, 223, 320
Kzo9I	GATC	2 cut(s)	284, 508
LmnI	GCTCC	1 cut(s)	353
Lsp1109I	GCAGC	3 cut(s)	310, 313, 424
MaeI	CTAG	3 cut(s)	99, 122, 168
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	2 cut(s)	173, 212
MalI	GATC	2 cut(s)	286, 510
MboI	GATC	2 cut(s)	284, 508
MboII	GAAGA	5 cut(s)	87, 195, 260, 263, 264
MflI	RGATCY	1 cut(s)	508
MluCI	AATT	2 cut(s)	156, 305
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	6 cut(s)	274, 337, 344, 415, 481, 507
MslI	CAYNNNNRTG	3 cut(s)	224, 318, 379
MspR9I	CCNGG	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	164
NcoI	CCATGG	1 cut(s)	316
NdeI	CATATG	1 cut(s)	380
NdeII	GATC	2 cut(s)	284, 508
NlaIII	CATG	3 cut(s)	56, 223, 320
NlaIV	GGNNCC	1 cut(s)	355
NspI	RCATGY	1 cut(s)	56
OliI	CACNNNNGTG	1 cut(s)	318
PfeI	GAWTC	2 cut(s)	32, 200
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	4 cut(s)	14, 325, 328, 439
Psp6I	CCWGG	1 cut(s)	162
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	508
RsaI	GTAC	2 cut(s)	262, 494
RsaNI	GTAC	2 cut(s)	261, 493
RseI	CAYNNNNRTG	3 cut(s)	224, 318, 379
SatI	GCNGC	4 cut(s)	13, 324, 327, 438
Sau3AI	GATC	2 cut(s)	284, 508
ScrFI	CCNGG	1 cut(s)	164
SetI	ASST	9 cut(s)	94, 136, 241, 266, 292, 348, 417, 481, 523
SmiMI	CAYNNNNRTG	3 cut(s)	224, 318, 379
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	2 cut(s)	156, 305
SsiI	CCGC	1 cut(s)	13
SspMI	CTAG	3 cut(s)	99, 122, 168
StyD4I	CCNGG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	2 cut(s)	428, 454
TaiI	ACGT	1 cut(s)	241
TasI	AATT	2 cut(s)	156, 305
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	2 cut(s)	32, 200
TscAI	CASTG	3 cut(s)	202, 439, 459
TseI	GCWGC	3 cut(s)	323, 326, 437
TspDTI	ATGAA	1 cut(s)	367
TspRI	CASTG	3 cut(s)	202, 439, 459
Van91I	CCANNNNNTGG	1 cut(s)	317
XapI	RAATTY	1 cut(s)	156
XceI	RCATGY	1 cut(s)	56
XspI	CTAG	3 cut(s)	99, 122, 168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.