Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000435.1

Orthogroup ID

OG0025482

Physical Location & Seq

Genomic Coordinates Forward (+)

120064 .. 121180

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgctttaccagcatgcccagaaaaacttgcttggagttgttgtaaaagcaccttcttctagtaataagcaacaaattcccctggctagtggtaacttacaagataccaaaaacactgattcttctcagggttactacatggtagtgaaatctaaacgtgcttttgaagaagagtattgtacctctgtttcttcacgcaaaggatcaggtgtcatcaacataaaattaccacaccatggtgctgctgctggggtgagatacgaggttagaggagccgatatcacagacttctcattcatatgcagtagcaaaataaagattgaccaagttcagcttcttgaggacagtagcagtgctgcttactccaagacagtgcaactgctgttggacacaaaacctaaaggggaggagtaccctccagccttagatccattgaaagatcttaagttgaaagacatgcatcttgtggaaacatactacaaatggacaaacttagtgcagaagatggcaaagaataagtgcgatggatgtattaaattggaggaacacattaagttagcaagagagatagggaaattcaccgtcaaaatgttgaatggcatgcacagaaaaaagaatagggaaattcacatcgcgaaactgatcggagagagaaggagaagagggagacaagaagaagaagaagaatctgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000288 GO:0000291 GO:0000956 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0015672 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019439 GO:0030001 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0035864 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055087 GO:0060255 GO:0065007 GO:0070035 GO:0070478 GO:0071704 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

231

Amino Acids

26.11

Weight (kDa)

9.32

Isoelectric Point (pI)

58.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTR4_beta-barrel	PF13234	11 - 189	6.6e-17	Mtr4-like, beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025482)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000435.1_g000028
rosa_samantha	Rh5BG463800 Rh5CG485700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	236
AccII	CGCG	1 cut(s)	635
AclWI	GGATC	2 cut(s)	211, 422
AcsI	RAATTY	3 cut(s)	75, 575, 624
AfaI	GTAC	2 cut(s)	181, 413
AfiI	CCNNNNNNNGG	1 cut(s)	236
AflII	CTTAAG	1 cut(s)	443
AgsI	TTSAA	4 cut(s)	167, 436, 451, 595
AjnI	CCWGG	1 cut(s)	81
AjuI	GAANNNNNNNTTGG	2 cut(s)	318, 350
AleI	CACNNNNGTG	1 cut(s)	237
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	661
AlwI	GGATC	2 cut(s)	211, 422
ApeKI	GCWGC	3 cut(s)	242, 245, 356
ApoI	RAATTY	3 cut(s)	75, 575, 624
AsuHPI	GGTGA	2 cut(s)	265, 571
BbvI	GCAGC	3 cut(s)	229, 232, 343
BccI	CCATC	2 cut(s)	499, 518
BciT130I	CCWGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	661
BfaI	CTAG	2 cut(s)	60, 87
BfrI	CTTAAG	1 cut(s)	443
BglII	AGATCT	1 cut(s)	439
BisI	GCNGC	3 cut(s)	243, 246, 357
BlsI	GCNGC	3 cut(s)	244, 247, 358
Bme1390I	CCNGG	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	469
BpmI	CTGGAG	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	359
BsaJI	CCNNGG	2 cut(s)	81, 235
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	81, 235
BseGI	GGATG	1 cut(s)	533
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	140
BseRI	GAGGAG	2 cut(s)	285, 422
BseXI	GCAGC	3 cut(s)	229, 232, 343
BseYI	CCCAGC	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	518
Bsh1236I	CGCG	1 cut(s)	635
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	661
Bsp143I	GATC	4 cut(s)	203, 427, 439, 642
Bsp19I	CCATGG	1 cut(s)	235
Bsp68I	TCGCGA	1 cut(s)	635
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	635
BspLI	GGNNCC	1 cut(s)	274
BspPI	GGATC	2 cut(s)	211, 422
BspTI	CTTAAG	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	81, 235
BssMI	GATC	4 cut(s)	203, 427, 439, 642
BssT1I	CCWWGG	1 cut(s)	235
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	3 cut(s)	347, 373, 583
Bst6I	CTCTTC	2 cut(s)	165, 655
BstAFI	CTTAAG	1 cut(s)	443
BstC8I	GCNNGC	2 cut(s)	15, 602
BstDEI	CTNAG	3 cut(s)	126, 424, 493
BstDSI	CCRYGG	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	533
BstFNI	CGCG	1 cut(s)	635
BstKTI	GATC	4 cut(s)	206, 430, 442, 645
BstMAI	GTCTC	1 cut(s)	661
BstMBI	GATC	4 cut(s)	203, 427, 439, 642
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	3 cut(s)	17, 460, 604
BstSCI	CCNGG	1 cut(s)	81
BstUI	CGCG	1 cut(s)	635
BstV1I	GCAGC	3 cut(s)	229, 232, 343
BstX2I	RGATCY	2 cut(s)	427, 439
BstYI	RGATCY	2 cut(s)	427, 439
BtgI	CCRYGG	1 cut(s)	235
BtgZI	GCGATG	2 cut(s)	537, 616
BtsCI	GGATG	1 cut(s)	533
BtsI	GCAGTG	1 cut(s)	358
BtsIMutI	CAGTG	3 cut(s)	114, 358, 378
BtuMI	TCGCGA	1 cut(s)	635
Cac8I	GCNNGC	2 cut(s)	15, 602
Csp6I	GTAC	2 cut(s)	180, 412
CviAII	CATG	5 cut(s)	14, 139, 236, 457, 601
CviJI	RGCY	4 cut(s)	86, 275, 334, 422
CviKI_1	RGCY	4 cut(s)	86, 275, 334, 422
CviQI	GTAC	2 cut(s)	180, 412
DdeI	CTNAG	3 cut(s)	126, 424, 493
DpnI	GATC	4 cut(s)	205, 429, 441, 644
DpnII	GATC	4 cut(s)	203, 427, 439, 642
Eam1104I	CTCTTC	2 cut(s)	165, 655
EarI	CTCTTC	2 cut(s)	165, 655
Eco130I	CCWWGG	1 cut(s)	235
Eco32I	GATATC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	81
EcoRV	GATATC	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	5 cut(s)	17, 142, 239, 460, 604
FaiI	YATR	9 cut(s)	15, 140, 221, 237, 299, 301, 458, 475, 602
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FatI	CATG	5 cut(s)	13, 138, 235, 456, 600
FauNDI	CATATG	1 cut(s)	299
Fnu4HI	GCNGC	3 cut(s)	243, 246, 357
FokI	GGATG	1 cut(s)	540
Fsp4HI	GCNGC	3 cut(s)	243, 246, 357
FspBI	CTAG	2 cut(s)	60, 87
GluI	GCNGC	3 cut(s)	243, 246, 357
GsaI	CCCAGC	1 cut(s)	252
GsuI	CTGGAG	1 cut(s)	402
Hin1II	CATG	5 cut(s)	17, 142, 239, 460, 604
HinfI	GANTC	2 cut(s)	119, 686
HphI	GGTGA	2 cut(s)	265, 571
Hpy188I	TCNGA	1 cut(s)	647
Hpy188III	TCNNGA	2 cut(s)	338, 634
HpyAV	CCTTC	2 cut(s)	63, 648
HpyCH4III	ACNGT	3 cut(s)	347, 373, 583
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	5 cut(s)	303, 376, 460, 499, 604
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	3 cut(s)	126, 424, 493
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	5 cut(s)	17, 142, 239, 460, 604
Kzo9I	GATC	4 cut(s)	203, 427, 439, 642
LmnI	GCTCC	1 cut(s)	272
LpnPI	CCDG	9 cut(s)	23, 32, 68, 95, 113, 192, 234, 432, 675
Lsp1109I	GCAGC	3 cut(s)	229, 232, 343
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	2 cut(s)	60, 87
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	2 cut(s)	92, 131
MalI	GATC	4 cut(s)	205, 429, 441, 644
MboI	GATC	4 cut(s)	203, 427, 439, 642
MflI	RGATCY	2 cut(s)	427, 439
MluCI	AATT	5 cut(s)	75, 224, 536, 575, 624
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	8 cut(s)	193, 256, 263, 334, 400, 426, 535, 656
Mph1103I	ATGCAT	1 cut(s)	462
MseI	TTAA	3 cut(s)	444, 534, 552
MslI	CAYNNNNRTG	3 cut(s)	143, 237, 298
MspCI	CTTAAG	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	635
MwoI	GCNNNNNNNGC	1 cut(s)	10
NcoI	CCATGG	1 cut(s)	235
NdeI	CATATG	1 cut(s)	299
NdeII	GATC	4 cut(s)	203, 427, 439, 642
NlaIII	CATG	5 cut(s)	17, 142, 239, 460, 604
NlaIV	GGNNCC	1 cut(s)	274
NruI	TCGCGA	1 cut(s)	635
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	3 cut(s)	17, 460, 604
OliI	CACNNNNGTG	1 cut(s)	237
PaeI	GCATGC	2 cut(s)	17, 604
PfeI	GAWTC	2 cut(s)	119, 686
PflMI	CCANNNNNTGG	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	244, 247, 358
Psp6I	CCWGG	1 cut(s)	81
PspFI	CCCAGC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	274
PsuI	RGATCY	2 cut(s)	427, 439
RruI	TCGCGA	1 cut(s)	635
RsaI	GTAC	2 cut(s)	181, 413
RsaNI	GTAC	2 cut(s)	180, 412
RseI	CAYNNNNRTG	3 cut(s)	143, 237, 298
SaqAI	TTAA	3 cut(s)	444, 534, 552
SatI	GCNGC	3 cut(s)	243, 246, 357
Sau3AI	GATC	4 cut(s)	203, 427, 439, 642
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	7 cut(s)	55, 160, 185, 211, 267, 336, 400
SfaNI	GCATC	1 cut(s)	469
SmiMI	CAYNNNNRTG	3 cut(s)	143, 237, 298
SmlI	CTYRAG	2 cut(s)	338, 443
SmoI	CTYRAG	2 cut(s)	338, 443
SphI	GCATGC	2 cut(s)	17, 604
Sse9I	AATT	5 cut(s)	75, 224, 536, 575, 624
SspMI	CTAG	2 cut(s)	60, 87
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	3 cut(s)	347, 373, 583
TaiI	ACGT	1 cut(s)	160
TasI	AATT	5 cut(s)	75, 224, 536, 575, 624
TfiI	GAWTC	2 cut(s)	119, 686
Tru1I	TTAA	3 cut(s)	444, 534, 552
Tru9I	TTAA	3 cut(s)	444, 534, 552
TscAI	CASTG	3 cut(s)	121, 358, 378
TseI	GCWGC	3 cut(s)	242, 245, 356
TspDTI	ATGAA	1 cut(s)	286
TspRI	CASTG	3 cut(s)	121, 358, 378
Van91I	CCANNNNNTGG	1 cut(s)	236
Vha464I	CTTAAG	1 cut(s)	443
XapI	RAATTY	3 cut(s)	75, 575, 624
XceI	RCATGY	3 cut(s)	17, 460, 604
XspI	CTAG	2 cut(s)	60, 87
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.