Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000493.1

Orthogroup ID

OG0019947

Physical Location & Seq

Genomic Coordinates Reverse (-)

227636 .. 229659

Gene Structure 2024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgaaagcgtcaaaggtggttattgcaaagacaacacatttatttaggtgggagttgcataaaattaaaatcaagcctggaaggaagaacatcaagagtgatcatcctgagatgtgtgaaaaggaacatgaagaagccactttgaagattgaagagaaactcattacggacaaggaagatgattcattcatcgcatcgatatccatgtcatgcattcctaattgtattcaagatcaacccaaggagaagtcaatgcccataccttttcaagtggaggagttcaagtttcaagatgcttattataaacttgtctacgatattggattcatggtgatatcttttaatttcaagaatattgaagttgatggcttatcatctgctttgcactgtgtggtacgtgtttcctttgcaaatattatggaggaggtatgtgaaagcaaggacttctccttccccaaacatgaggagaagatcctcgagttctggtctaaaatcaatgcctttgagacccaattggctcgaaccaagaacatgccggagtatgtcttctacgacggtccagcttttgccactggcctcccacactatggctacctattggctggcaccatcaaggacattgtcatgcgctaccagtccatgactggccaccatgtcaagcgccgctttggctgggactgccatggcttgcctgttgagaccgagatcgataagaagctcaacatcaagacccaacaagatgttctgaacctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004822 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006428 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0019899 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051020 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1

Protein Analysis

251

Amino Acids

29.18

Weight (kDa)

6.37

Isoelectric Point (pI)

50.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	157 - 250	1.9e-32	tRNA synthetases class I (I, L, M and V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019947)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0060211
rosa_multiflora	Rmu_sc0000493.1_g000054 Rmu_sc0003366.1_g000006 Rmu_sc0007120.1_g000001 Rmu_ssc0000039.1_g000002
rosa_samantha	Rh5BG405000 Rh5CG429100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
AccB1I	GGYRCC	1 cut(s)	605
AccB7I	CCANNNNNTGG	1 cut(s)	587
AccI	GTMKAC	1 cut(s)	312
AciI	CCGC	1 cut(s)	664
AclWI	GGATC	1 cut(s)	466
AcoI	YGGCCR	1 cut(s)	646
AdeI	CACNNNGTG	1 cut(s)	391
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	1 cut(s)	587
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	8 cut(s)	145, 152, 230, 269, 283, 290, 349, 359
AjnI	CCWGG	1 cut(s)	76
AjuI	GAANNNNNNNTTGG	1 cut(s)	726
AluBI	AGCT	2 cut(s)	563, 718
AluI	AGCT	2 cut(s)	563, 718
Alw26I	GTCTC	2 cut(s)	500, 692
AlwI	GGATC	1 cut(s)	466
Ama87I	CYCGRG	1 cut(s)	476
AoxI	GGCC	2 cut(s)	574, 646
AspLEI	GCGC	2 cut(s)	630, 663
AspS9I	GGNCC	1 cut(s)	557
AsuHPI	GGTGA	1 cut(s)	343
AvaI	CYCGRG	1 cut(s)	476
AvaII	GGWCC	1 cut(s)	557
BalI	TGGCCA	1 cut(s)	648
BanI	GGYRCC	1 cut(s)	605
BbsI	GAAGAC	1 cut(s)	538
BccI	CCATC	2 cut(s)	359, 617
BciT130I	CCWGG	1 cut(s)	78
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	2 cut(s)	500, 692
BfoI	RGCGCY	1 cut(s)	664
BglI	GCCNNNNNGGC	1 cut(s)	669
BisI	GCNGC	1 cut(s)	664
BlsI	GCNGC	1 cut(s)	665
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	557
BmeT110I	CYCGRG	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	557
BmiI	GGNNCC	1 cut(s)	607
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	2 cut(s)	203, 283
BpiI	GAAGAC	1 cut(s)	538
Bsa29I	ATCGAT	2 cut(s)	197, 708
BsaAI	YACGTR	1 cut(s)	398
BsaI	GGTCTC	2 cut(s)	500, 692
BsaJI	CCNNGG	2 cut(s)	240, 682
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
Bse1I	ACTGG	3 cut(s)	577, 634, 649
BseBI	CCWGG	1 cut(s)	78
BseCI	ATCGAT	2 cut(s)	197, 708
BseDI	CCNNGG	2 cut(s)	240, 682
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	3 cut(s)	577, 634, 649
BseRI	GAGGAG	3 cut(s)	290, 437, 479
BseYI	CCCAGC	1 cut(s)	672
BshFI	GGCC	2 cut(s)	576, 648
BshNI	GGYRCC	1 cut(s)	605
BshVI	ATCGAT	2 cut(s)	197, 708
BsiHKCI	CYCGRG	1 cut(s)	476
BsiSI	CCGG	1 cut(s)	536
BslFI	GGGAC	1 cut(s)	689
BslI	CCNNNNNNNGG	1 cut(s)	587
BsmAI	GTCTC	2 cut(s)	500, 692
BsmFI	GGGAC	1 cut(s)	689
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	2 cut(s)	576, 648
Bso31I	GGTCTC	2 cut(s)	500, 692
BsoBI	CYCGRG	1 cut(s)	476
Bsp143I	GATC	4 cut(s)	100, 232, 471, 705
Bsp19I	CCATGG	1 cut(s)	682
BspACI	CCGC	1 cut(s)	664
BspANI	GGCC	2 cut(s)	576, 648
BspCNI	CTCAG	1 cut(s)	100
BspDI	ATCGAT	2 cut(s)	197, 708
BspLI	GGNNCC	1 cut(s)	607
BspPI	GGATC	1 cut(s)	466
BspT107I	GGYRCC	1 cut(s)	605
BspTNI	GGTCTC	2 cut(s)	500, 692
BsrI	ACTGG	3 cut(s)	577, 634, 649
BssECI	CCNNGG	2 cut(s)	240, 682
BssMI	GATC	4 cut(s)	100, 232, 471, 705
BssT1I	CCWWGG	2 cut(s)	240, 682
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	389, 557
Bst6I	CTCTTC	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	604, 689
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	1 cut(s)	682
BstF5I	GGATG	1 cut(s)	103
BstH2I	RGCGCY	1 cut(s)	664
BstHHI	GCGC	2 cut(s)	630, 663
BstKTI	GATC	4 cut(s)	103, 235, 474, 708
BstMAI	GTCTC	2 cut(s)	500, 692
BstMBI	GATC	4 cut(s)	100, 232, 471, 705
BstMWI	GCNNNNNNNGC	2 cut(s)	669, 678
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	535
BstSCI	CCNGG	1 cut(s)	76
BstV2I	GAAGAC	1 cut(s)	538
BstX2I	RGATCY	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	471
Bsu15I	ATCGAT	2 cut(s)	197, 708
BsuRI	GGCC	2 cut(s)	576, 648
BsuTUI	ATCGAT	2 cut(s)	197, 708
BtgI	CCRYGG	1 cut(s)	682
BtgZI	GCGATG	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	385, 570
Cac8I	GCNNGC	2 cut(s)	604, 689
CfoI	GCGC	2 cut(s)	630, 663
Cfr13I	GGNCC	1 cut(s)	557
ClaI	ATCGAT	2 cut(s)	197, 708
Csp6I	GTAC	1 cut(s)	395
CviQI	GTAC	1 cut(s)	395
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	4 cut(s)	102, 234, 473, 707
DpnII	GATC	4 cut(s)	100, 232, 471, 705
DraIII	CACNNNGTG	1 cut(s)	391
EaeI	YGGCCR	1 cut(s)	646
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco130I	CCWWGG	2 cut(s)	240, 682
Eco31I	GGTCTC	2 cut(s)	500, 692
Eco32I	GATATC	2 cut(s)	201, 336
Eco47I	GGWCC	1 cut(s)	557
Eco88I	CYCGRG	1 cut(s)	476
EcoRII	CCWGG	1 cut(s)	76
EcoRV	GATATC	2 cut(s)	201, 336
EcoT14I	CCWWGG	2 cut(s)	240, 682
EcoT22I	ATGCAT	1 cut(s)	215
ErhI	CCWWGG	2 cut(s)	240, 682
FalI	AAGNNNNNCTT	2 cut(s)	650, 682
FaqI	GGGAC	1 cut(s)	689
FbaI	TGATCA	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	1 cut(s)	664
FokI	GGATG	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	664
GlaI	GCGC	2 cut(s)	629, 662
GluI	GCNGC	1 cut(s)	664
GsaI	CCCAGC	1 cut(s)	676
HaeII	RGCGCY	1 cut(s)	664
HaeIII	GGCC	2 cut(s)	576, 648
HapII	CCGG	1 cut(s)	536
HhaI	GCGC	2 cut(s)	630, 663
Hin6I	GCGC	2 cut(s)	628, 661
HinP1I	GCGC	2 cut(s)	628, 661
HinfI	GANTC	2 cut(s)	182, 324
HpaII	CCGG	1 cut(s)	536
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	1 cut(s)	747
Hpy188III	TCNNGA	6 cut(s)	94, 107, 230, 290, 349, 727
Hpy8I	GTNNAC	1 cut(s)	313
Hpy99I	CGWCG	1 cut(s)	557
HpyAV	CCTTC	2 cut(s)	75, 460
HpyCH4III	ACNGT	2 cut(s)	389, 557
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	5 cut(s)	26, 58, 213, 385, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	669, 678
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	397
HspAI	GCGC	2 cut(s)	628, 661
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	4 cut(s)	100, 232, 471, 705
LweI	GCATC	2 cut(s)	203, 283
MaeII	ACGT	1 cut(s)	397
MalI	GATC	4 cut(s)	102, 234, 473, 707
MboI	GATC	4 cut(s)	100, 232, 471, 705
MboII	GAAGA	7 cut(s)	97, 143, 157, 164, 188, 481, 538
MfeI	CAATTG	1 cut(s)	512
MflI	RGATCY	1 cut(s)	471
MlsI	TGGCCA	1 cut(s)	648
MluCI	AATT	4 cut(s)	63, 220, 343, 512
MluNI	TGGCCA	1 cut(s)	648
MnlI	CCTC	6 cut(s)	268, 415, 418, 457, 485, 587
Mox20I	TGGCCA	1 cut(s)	648
Mph1103I	ATGCAT	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	648
MseI	TTAA	2 cut(s)	66, 342
MslI	CAYNNNNRTG	1 cut(s)	623
Msp20I	TGGCCA	1 cut(s)	648
MspI	CCGG	1 cut(s)	536
MspR9I	CCNGG	1 cut(s)	78
MunI	CAATTG	1 cut(s)	512
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	669, 678
NcoI	CCATGG	1 cut(s)	682
NdeII	GATC	4 cut(s)	100, 232, 471, 705
NlaIV	GGNNCC	1 cut(s)	607
NsiI	ATGCAT	1 cut(s)	215
NspI	RCATGY	1 cut(s)	535
PaeR7I	CTCGAG	1 cut(s)	476
PctI	GAATGC	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	182, 324
PflFI	GACNNNGTC	1 cut(s)	620
PflMI	CCANNNNNTGG	1 cut(s)	587
PkrI	GCNGC	1 cut(s)	665
Ppu21I	YACGTR	1 cut(s)	398
PsiI	TTATAA	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	76
PspFI	CCCAGC	1 cut(s)	672
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	607
PspPI	GGNCC	1 cut(s)	557
PspXI	VCTCGAGB	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	471
PsyI	GACNNNGTC	1 cut(s)	620
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
RseI	CAYNNNNRTG	1 cut(s)	623
SaqAI	TTAA	2 cut(s)	66, 342
SatI	GCNGC	1 cut(s)	664
Sau3AI	GATC	4 cut(s)	100, 232, 471, 705
Sau96I	GGNCC	1 cut(s)	557
ScrFI	CCNGG	1 cut(s)	78
SetI	ASST	9 cut(s)	18, 50, 265, 400, 429, 565, 597, 720, 753
SfaNI	GCATC	2 cut(s)	203, 283
Sfr274I	CTCGAG	1 cut(s)	476
SinI	GGWCC	1 cut(s)	557
SlaI	CTCGAG	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	623
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	4 cut(s)	63, 220, 343, 512
SsiI	CCGC	1 cut(s)	664
SspI	AATATT	2 cut(s)	355, 415
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	2 cut(s)	240, 682
TaaI	ACNGT	2 cut(s)	389, 557
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	4 cut(s)	197, 477, 520, 708
TaqII	GACCGA	1 cut(s)	716
TasI	AATT	4 cut(s)	63, 220, 343, 512
TauI	GCSGC	1 cut(s)	666
TfiI	GAWTC	2 cut(s)	182, 324
Tru1I	TTAA	2 cut(s)	66, 342
Tru9I	TTAA	2 cut(s)	66, 342
TscAI	CASTG	2 cut(s)	392, 577
TspDTI	ATGAA	5 cut(s)	17, 144, 174, 178, 316
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	2 cut(s)	392, 577
Tth111I	GACNNNGTC	1 cut(s)	620
Van91I	CCANNNNNTGG	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	557
XceI	RCATGY	1 cut(s)	535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XhoI	CTCGAG	1 cut(s)	476
XmiI	GTMKAC	1 cut(s)	312
Zsp2I	ATGCAT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.