Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000039.1

Orthogroup ID

OG0019947

Physical Location & Seq

Genomic Coordinates Forward (+)

14760 .. 15488

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000039.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atggaggaggtatgcgagggcaaggacttctccttcccgaagcaagaggagaagattctccactactggtcccaaatcaaagccttcgagactcaattgtctctcaccgaacacatgcccgagtacgtcttctacgacggcccccccttcgccaccggcctccctcactacggccacatactggccggcaccatcaaggacatcatcacgcgctaccagtccatgaccggccaccacgtcacgcgccgcttcggctgggactgtcacggccttcccgtcgagaacgagattgataagaagctcaacatcacgcgccgggaacaggttctcgaaatggggatcgataagtacaacgaggagtgccggagcattgttactcggtttgtggaggagtgggagaagagtacactctctattactattgaagatgccaacgatcaagccacagttatattgatgggaaagcaagcgcagaacaactattcggaagcagctgtcaagacttggtcaacaaaagatcatatccaacaagtgaactcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004822 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006428 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0019899 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051020 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1

Protein Analysis

180

Amino Acids

20.91

Weight (kDa)

5.35

Isoelectric Point (pI)

62.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019947)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0060211
rosa_multiflora	Rmu_sc0000493.1_g000054 Rmu_sc0003366.1_g000006 Rmu_sc0007120.1_g000001 Rmu_ssc0000039.1_g000002
rosa_samantha	Rh5BG405000 Rh5CG429100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	97
AccB1I	GGYRCC	1 cut(s)	188
AccB7I	CCANNNNNTGG	1 cut(s)	181
AccII	CGCG	3 cut(s)	211, 244, 313
AciI	CCGC	1 cut(s)	247
AclWI	GGATC	1 cut(s)	347
AcoI	YGGCCR	3 cut(s)	172, 183, 229
AfaI	GTAC	3 cut(s)	125, 350, 406
AfiI	CCNNNNNNNGG	3 cut(s)	170, 181, 322
AgsI	TTSAA	1 cut(s)	425
AjiI	CACGTC	1 cut(s)	238
AluBI	AGCT	2 cut(s)	301, 494
AluI	AGCT	2 cut(s)	301, 494
Alw26I	GTCTC	2 cut(s)	83, 105
AlwI	GGATC	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	6 cut(s)	139, 157, 172, 183, 229, 268
ApeKI	GCWGC	1 cut(s)	491
Asp700I	GAANNNNTTC	1 cut(s)	324
AspLEI	GCGC	4 cut(s)	213, 246, 315, 472
AspS9I	GGNCC	2 cut(s)	69, 140
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	97
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	503
BccI	CCATC	2 cut(s)	200, 451
BceAI	ACGGC	3 cut(s)	154, 187, 283
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	2 cut(s)	83, 105
BglI	GCCNNNNNGGC	1 cut(s)	252
BisI	GCNGC	2 cut(s)	247, 492
BlsI	GCNGC	2 cut(s)	248, 493
Bme1390I	CCNGG	1 cut(s)	317
Bme18I	GGWCC	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	119
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	69, 140
BmiI	GGNNCC	3 cut(s)	71, 142, 190
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	418
BpiI	GAAGAC	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	317
Bsa29I	ATCGAT	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 181, 322
Bse118I	RCCGGY	3 cut(s)	155, 185, 227
Bse1I	ACTGG	3 cut(s)	71, 186, 217
BseCI	ATCGAT	1 cut(s)	342
BseLI	CCNNNNNNNGG	3 cut(s)	170, 181, 322
BseNI	ACTGG	3 cut(s)	71, 186, 217
BseRI	GAGGAG	4 cut(s)	20, 62, 371, 404
BseXI	GCAGC	1 cut(s)	503
BseYI	CCCAGC	1 cut(s)	255
Bsh1236I	CGCG	3 cut(s)	211, 244, 313
BshFI	GGCC	6 cut(s)	141, 159, 174, 185, 231, 270
BshNI	GGYRCC	1 cut(s)	188
BshVI	ATCGAT	1 cut(s)	342
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	5 cut(s)	156, 186, 228, 316, 364
BslFI	GGGAC	2 cut(s)	55, 272
BslI	CCNNNNNNNGG	3 cut(s)	170, 181, 322
BsmAI	GTCTC	2 cut(s)	83, 105
BsmFI	GGGAC	2 cut(s)	55, 272
BsnI	GGCC	6 cut(s)	141, 159, 174, 185, 231, 270
BsoBI	CYCGRG	1 cut(s)	119
Bsp143I	GATC	3 cut(s)	339, 436, 517
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	6 cut(s)	141, 159, 174, 185, 231, 270
BspDI	ATCGAT	1 cut(s)	342
BspFNI	CGCG	3 cut(s)	211, 244, 313
BspLI	GGNNCC	3 cut(s)	71, 142, 190
BspPI	GGATC	1 cut(s)	347
BspT107I	GGYRCC	1 cut(s)	188
BsrFI	RCCGGY	3 cut(s)	155, 185, 227
BsrI	ACTGG	3 cut(s)	71, 186, 217
BssAI	RCCGGY	3 cut(s)	155, 185, 227
BssMI	GATC	3 cut(s)	339, 436, 517
Bst4CI	ACNGT	2 cut(s)	263, 448
Bst6I	CTCTTC	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	187, 468
BstFNI	CGCG	3 cut(s)	211, 244, 313
BstHHI	GCGC	4 cut(s)	213, 246, 315, 472
BstKTI	GATC	3 cut(s)	342, 439, 520
BstMAI	GTCTC	2 cut(s)	83, 105
BstMBI	GATC	3 cut(s)	339, 436, 517
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	315
BstUI	CGCG	3 cut(s)	211, 244, 313
BstV1I	GCAGC	1 cut(s)	503
BstV2I	GAAGAC	1 cut(s)	121
Bsu15I	ATCGAT	1 cut(s)	342
BsuRI	GGCC	6 cut(s)	141, 159, 174, 185, 231, 270
BsuTUI	ATCGAT	1 cut(s)	342
BtrI	CACGTC	1 cut(s)	238
Cac8I	GCNNGC	2 cut(s)	187, 468
CfoI	GCGC	4 cut(s)	213, 246, 315, 472
Cfr10I	RCCGGY	3 cut(s)	155, 185, 227
Cfr13I	GGNCC	2 cut(s)	69, 140
ClaI	ATCGAT	1 cut(s)	342
Csp6I	GTAC	3 cut(s)	124, 349, 405
CviAII	CATG	2 cut(s)	115, 223
CviQI	GTAC	3 cut(s)	124, 349, 405
DpnI	GATC	3 cut(s)	341, 438, 519
DpnII	GATC	3 cut(s)	339, 436, 517
DrdI	GACNNNNNNGTC	1 cut(s)	97
DseDI	GACNNNNNNGTC	1 cut(s)	97
EaeI	YGGCCR	3 cut(s)	172, 183, 229
Eam1104I	CTCTTC	1 cut(s)	395
EarI	CTCTTC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	119
FaeI	CATG	2 cut(s)	118, 226
FaiI	YATR	7 cut(s)	13, 116, 179, 224, 452, 522, 541
FaqI	GGGAC	2 cut(s)	55, 272
FatI	CATG	2 cut(s)	114, 222
Fnu4HI	GCNGC	2 cut(s)	247, 492
Fsp4HI	GCNGC	2 cut(s)	247, 492
GlaI	GCGC	4 cut(s)	212, 245, 314, 471
GluI	GCNGC	2 cut(s)	247, 492
GsaI	CCCAGC	1 cut(s)	259
HaeIII	GGCC	6 cut(s)	141, 159, 174, 185, 231, 270
HapII	CCGG	5 cut(s)	156, 186, 228, 316, 364
HhaI	GCGC	4 cut(s)	213, 246, 315, 472
Hin1II	CATG	2 cut(s)	118, 226
Hin6I	GCGC	4 cut(s)	211, 244, 313, 470
HinP1I	GCGC	4 cut(s)	211, 244, 313, 470
HincII	GTYRAC	1 cut(s)	510
HindII	GTYRAC	1 cut(s)	510
HinfI	GANTC	2 cut(s)	55, 91
HpaII	CCGG	5 cut(s)	156, 186, 228, 316, 364
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	3 cut(s)	407, 510, 535
Hpy188I	TCNGA	1 cut(s)	487
Hpy188III	TCNNGA	5 cut(s)	37, 88, 280, 329, 499
Hpy8I	GTNNAC	3 cut(s)	407, 510, 535
Hpy99I	CGWCG	2 cut(s)	140, 281
HpyAV	CCTTC	4 cut(s)	43, 94, 157, 281
HpyCH4III	ACNGT	2 cut(s)	263, 448
HpyCH4IV	ACGT	2 cut(s)	126, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpySE526I	ACGT	2 cut(s)	126, 237
Hsp92II	CATG	2 cut(s)	118, 226
HspAI	GCGC	4 cut(s)	211, 244, 313, 470
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	339, 436, 517
LmnI	GCTCC	1 cut(s)	366
Lsp1109I	GCAGC	1 cut(s)	503
LweI	GCATC	1 cut(s)	418
MaeII	ACGT	2 cut(s)	126, 237
MaeIII	GTNAC	3 cut(s)	238, 263, 373
MalI	GATC	3 cut(s)	341, 438, 519
MboI	GATC	3 cut(s)	339, 436, 517
MboII	GAAGA	4 cut(s)	64, 121, 412, 437
MfeI	CAATTG	1 cut(s)	95
MluCI	AATT	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	85
MnlI	CCTC	6 cut(s)	10, 40, 170, 174, 349, 382
MroNI	GCCGGC	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	324
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	5 cut(s)	156, 186, 228, 316, 364
MspR9I	CCNGG	1 cut(s)	317
MunI	CAATTG	1 cut(s)	95
MvnI	CGCG	3 cut(s)	211, 244, 313
MwoI	GCNNNNNNNGC	1 cut(s)	252
NaeI	GCCGGC	1 cut(s)	187
NciI	CCSGG	1 cut(s)	317
NdeII	GATC	3 cut(s)	339, 436, 517
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	2 cut(s)	118, 226
NlaIV	GGNNCC	3 cut(s)	71, 142, 190
NmuCI	GTSAC	2 cut(s)	238, 263
NspI	RCATGY	1 cut(s)	118
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 273
PdiI	GCCGGC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	55
PflFI	GACNNNGTC	1 cut(s)	505
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	248, 493
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PspFI	CCCAGC	1 cut(s)	255
PspN4I	GGNNCC	3 cut(s)	71, 142, 190
PspPI	GGNCC	2 cut(s)	69, 140
PsyI	GACNNNGTC	1 cut(s)	505
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	3 cut(s)	125, 350, 406
RsaNI	GTAC	3 cut(s)	124, 349, 405
SatI	GCNGC	2 cut(s)	247, 492
Sau3AI	GATC	3 cut(s)	339, 436, 517
Sau96I	GGNCC	2 cut(s)	69, 140
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	6 cut(s)	12, 129, 240, 303, 327, 496
SfaNI	GCATC	1 cut(s)	418
SinI	GGWCC	1 cut(s)	69
Sse9I	AATT	1 cut(s)	95
SsiI	CCGC	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	263, 448
TaiI	ACGT	2 cut(s)	129, 240
TaqI	TCGA	4 cut(s)	87, 279, 330, 342
TasI	AATT	1 cut(s)	95
TatI	WGTACW	2 cut(s)	348, 404
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	55
TseFI	GTSAC	2 cut(s)	238, 263
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	2 cut(s)	238, 263
Tth111I	GACNNNGTC	1 cut(s)	505
Van91I	CCANNNNNTGG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	69
XceI	RCATGY	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.