Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007120.1

Orthogroup ID

OG0019947

Physical Location & Seq

Genomic Coordinates Reverse (-)

239 .. 1363

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007120.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atggaggaggtatgcgagggcaaggacttctccttcccgaagcaagaggagaagattctccactactggtcccaaatcaaagccttcgagactcaattgtctctcaccgaacacatgcccgagtacgtcttctacgacggcccccccttcgccaccggcctccctcactacggccacatactggccggcaccatcaaggacatcatcacgcgctaccagtccatgaccggccaccacgtcacgcgccgcttcggctgggactgtcacggccttcccgtcgagaacgagattgataagaagctcaacatcacgcgccgggaacaggttctcgaaatgggaatcgataagtacaacgaggagtgccggagcattgttactcggtttgtggaggagtgggagaaggttattacacgcactgggaggtggatcgattttcggaacgattataagaccatggacttgaagtttatggagagtgtgtggtgggtttttgctcagatatatgataagggccttgtctataagggcttcaaggtcatgccgtacagcaccggttgcaagacgccgctttcgaatttcgaggctaatcaagattacaaggatgttcctgatcctgaagttatggtggcttttccaattattgatgatccacaagaggcaagttttgtggcttggacaactactccgtggacccttcctagccatttagcgctatgtgtcaatgcaaattttacttatttgaaggtcagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004822 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006428 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0019899 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051020 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1

Protein Analysis

250

Amino Acids

29.32

Weight (kDa)

5.41

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019947)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0060211
rosa_multiflora	Rmu_sc0000493.1_g000054 Rmu_sc0003366.1_g000006 Rmu_sc0007120.1_g000001 Rmu_ssc0000039.1_g000002
rosa_samantha	Rh5BG405000 Rh5CG429100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
AasI	GACNNNNNNGTC	1 cut(s)	97
AccB1I	GGYRCC	1 cut(s)	188
AccB7I	CCANNNNNTGG	1 cut(s)	181
AccII	CGCG	3 cut(s)	211, 244, 313
AciI	CCGC	2 cut(s)	247, 566
AclWI	GGATC	3 cut(s)	434, 605, 641
AcoI	YGGCCR	3 cut(s)	172, 183, 229
AcsI	RAATTY	2 cut(s)	574, 727
AcuI	CTGAAG	1 cut(s)	636
AcyI	GRCGYC	1 cut(s)	563
AfaI	GTAC	3 cut(s)	125, 350, 545
AfeI	AGCGCT	1 cut(s)	711
AfiI	CCNNNNNNNGG	3 cut(s)	170, 181, 322
AgeI	ACCGGT	1 cut(s)	551
AgsI	TTSAA	3 cut(s)	463, 532, 742
AjiI	CACGTC	1 cut(s)	238
AluBI	AGCT	1 cut(s)	301
AluI	AGCT	1 cut(s)	301
Alw26I	GTCTC	2 cut(s)	83, 105
AlwI	GGATC	3 cut(s)	434, 605, 641
Ama87I	CYCGRG	1 cut(s)	119
Aor51HI	AGCGCT	1 cut(s)	711
AoxI	GGCC	7 cut(s)	139, 157, 172, 183, 229, 268, 511
ApoI	RAATTY	2 cut(s)	574, 727
ArsI	GACNNNNNNTTYG	2 cut(s)	553, 585
AsiGI	ACCGGT	1 cut(s)	551
Asp700I	GAANNNNTTC	1 cut(s)	324
AspLEI	GCGC	4 cut(s)	213, 246, 315, 712
AspS9I	GGNCC	4 cut(s)	69, 140, 511, 690
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	97
AsuII	TTCGAA	1 cut(s)	572
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	2 cut(s)	69, 690
BanI	GGYRCC	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	121
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	4 cut(s)	154, 187, 283, 526
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	2 cut(s)	83, 105
BfaI	CTAG	1 cut(s)	699
BfoI	RGCGCY	1 cut(s)	713
BglI	GCCNNNNNGGC	1 cut(s)	252
BisI	GCNGC	2 cut(s)	247, 566
BlsI	GCNGC	2 cut(s)	248, 567
Bme1390I	CCNGG	1 cut(s)	317
Bme18I	GGWCC	2 cut(s)	69, 690
BmeT110I	CYCGRG	1 cut(s)	119
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	4 cut(s)	69, 140, 511, 690
BmiI	GGNNCC	4 cut(s)	71, 142, 190, 692
BmrFI	CCNGG	1 cut(s)	317
BmrI	ACTGGG	1 cut(s)	426
BmuI	ACTGGG	1 cut(s)	426
BpiI	GAAGAC	1 cut(s)	121
Bpu14I	TTCGAA	1 cut(s)	572
BpuMI	CCSGG	1 cut(s)	317
Bsa29I	ATCGAT	2 cut(s)	342, 429
BsaHI	GRCGYC	1 cut(s)	563
BsaJI	CCNNGG	2 cut(s)	453, 686
BsaWI	WCCGGW	1 cut(s)	551
BsaXI	ACNNNNNCTCC	4 cut(s)	464, 494, 667, 697
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 181, 322
Bse118I	RCCGGY	4 cut(s)	155, 185, 227, 551
Bse1I	ACTGG	4 cut(s)	71, 186, 217, 421
BseCI	ATCGAT	2 cut(s)	342, 429
BseDI	CCNNGG	2 cut(s)	453, 686
BseGI	GGATG	1 cut(s)	607
BseLI	CCNNNNNNNGG	3 cut(s)	170, 181, 322
BseMII	CTCAG	1 cut(s)	509
BseNI	ACTGG	4 cut(s)	71, 186, 217, 421
BseRI	GAGGAG	4 cut(s)	20, 62, 371, 404
BseYI	CCCAGC	1 cut(s)	255
Bsh1236I	CGCG	3 cut(s)	211, 244, 313
BshFI	GGCC	7 cut(s)	141, 159, 174, 185, 231, 270, 513
BshNI	GGYRCC	1 cut(s)	188
BshTI	ACCGGT	1 cut(s)	551
BshVI	ATCGAT	2 cut(s)	342, 429
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	6 cut(s)	156, 186, 228, 316, 364, 552
BslFI	GGGAC	2 cut(s)	55, 272
BslI	CCNNNNNNNGG	3 cut(s)	170, 181, 322
BsmAI	GTCTC	2 cut(s)	83, 105
BsmFI	GGGAC	2 cut(s)	55, 272
BsnI	GGCC	7 cut(s)	141, 159, 174, 185, 231, 270, 513
BsoBI	CYCGRG	1 cut(s)	119
Bsp119I	TTCGAA	1 cut(s)	572
Bsp143I	GATC	3 cut(s)	426, 610, 646
Bsp19I	CCATGG	1 cut(s)	453
BspACI	CCGC	2 cut(s)	247, 566
BspANI	GGCC	7 cut(s)	141, 159, 174, 185, 231, 270, 513
BspCNI	CTCAG	1 cut(s)	508
BspDI	ATCGAT	2 cut(s)	342, 429
BspFNI	CGCG	3 cut(s)	211, 244, 313
BspLI	GGNNCC	4 cut(s)	71, 142, 190, 692
BspPI	GGATC	3 cut(s)	434, 605, 641
BspT104I	TTCGAA	1 cut(s)	572
BspT107I	GGYRCC	1 cut(s)	188
BsrFI	RCCGGY	4 cut(s)	155, 185, 227, 551
BsrI	ACTGG	4 cut(s)	71, 186, 217, 421
BssAI	RCCGGY	4 cut(s)	155, 185, 227, 551
BssECI	CCNNGG	2 cut(s)	453, 686
BssMI	GATC	3 cut(s)	426, 610, 646
BssNI	GRCGYC	1 cut(s)	563
BssT1I	CCWWGG	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	263
BstACI	GRCGYC	1 cut(s)	563
BstAPI	GCANNNNNTGC	1 cut(s)	555
BstBI	TTCGAA	1 cut(s)	572
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	495
BstDSI	CCRYGG	2 cut(s)	453, 686
BstF5I	GGATG	1 cut(s)	607
BstFNI	CGCG	3 cut(s)	211, 244, 313
BstH2I	RGCGCY	1 cut(s)	713
BstHHI	GCGC	4 cut(s)	213, 246, 315, 712
BstKTI	GATC	3 cut(s)	429, 613, 649
BstMAI	GTCTC	2 cut(s)	83, 105
BstMBI	GATC	3 cut(s)	426, 610, 646
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 555
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	315
BstUI	CGCG	3 cut(s)	211, 244, 313
BstV2I	GAAGAC	1 cut(s)	121
Bsu15I	ATCGAT	2 cut(s)	342, 429
BsuRI	GGCC	7 cut(s)	141, 159, 174, 185, 231, 270, 513
BsuTUI	ATCGAT	2 cut(s)	342, 429
BtgI	CCRYGG	2 cut(s)	453, 686
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	607
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	187
CfoI	GCGC	4 cut(s)	213, 246, 315, 712
Cfr10I	RCCGGY	4 cut(s)	155, 185, 227, 551
Cfr13I	GGNCC	4 cut(s)	69, 140, 511, 690
ClaI	ATCGAT	2 cut(s)	342, 429
CseI	GACGC	1 cut(s)	571
Csp6I	GTAC	3 cut(s)	124, 349, 544
CspAI	ACCGGT	1 cut(s)	551
CspCI	CAANNNNNGTGG	2 cut(s)	648, 683
CviAII	CATG	4 cut(s)	115, 223, 454, 538
CviQI	GTAC	3 cut(s)	124, 349, 544
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	3 cut(s)	428, 612, 648
DpnII	GATC	3 cut(s)	426, 610, 646
DrdI	GACNNNNNNGTC	1 cut(s)	97
DseDI	GACNNNNNNGTC	1 cut(s)	97
EaeI	YGGCCR	3 cut(s)	172, 183, 229
Eco130I	CCWWGG	1 cut(s)	453
Eco47I	GGWCC	2 cut(s)	69, 690
Eco47III	AGCGCT	1 cut(s)	711
Eco57I	CTGAAG	1 cut(s)	636
Eco88I	CYCGRG	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	4 cut(s)	118, 226, 457, 541
FaqI	GGGAC	2 cut(s)	55, 272
FatI	CATG	4 cut(s)	114, 222, 453, 537
Fnu4HI	GCNGC	2 cut(s)	247, 566
FokI	GGATG	1 cut(s)	614
Fsp4HI	GCNGC	2 cut(s)	247, 566
FspBI	CTAG	1 cut(s)	699
GlaI	GCGC	4 cut(s)	212, 245, 314, 711
GluI	GCNGC	2 cut(s)	247, 566
GsaI	CCCAGC	1 cut(s)	259
HaeII	RGCGCY	1 cut(s)	713
HaeIII	GGCC	7 cut(s)	141, 159, 174, 185, 231, 270, 513
HapII	CCGG	6 cut(s)	156, 186, 228, 316, 364, 552
HgaI	GACGC	1 cut(s)	571
HhaI	GCGC	4 cut(s)	213, 246, 315, 712
Hin1I	GRCGYC	1 cut(s)	563
Hin1II	CATG	4 cut(s)	118, 226, 457, 541
Hin6I	GCGC	4 cut(s)	211, 244, 313, 710
HinP1I	GCGC	4 cut(s)	211, 244, 313, 710
HinfI	GANTC	3 cut(s)	55, 91, 339
HpaII	CCGG	6 cut(s)	156, 186, 228, 316, 364, 552
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	690
Hpy188I	TCNGA	2 cut(s)	438, 498
Hpy188III	TCNNGA	7 cut(s)	37, 88, 280, 329, 590, 608, 614
Hpy8I	GTNNAC	1 cut(s)	690
Hpy99I	CGWCG	2 cut(s)	140, 281
HpyAV	CCTTC	7 cut(s)	43, 94, 157, 281, 394, 704, 736
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	2 cut(s)	126, 237
HpyCH4V	TGCA	2 cut(s)	558, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 555
HpyF3I	CTNAG	1 cut(s)	495
HpySE526I	ACGT	2 cut(s)	126, 237
Hsp92I	GRCGYC	1 cut(s)	563
Hsp92II	CATG	4 cut(s)	118, 226, 457, 541
HspAI	GCGC	4 cut(s)	211, 244, 313, 710
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	426, 610, 646
LmnI	GCTCC	1 cut(s)	366
MaeI	CTAG	1 cut(s)	699
MaeII	ACGT	2 cut(s)	126, 237
MaeIII	GTNAC	3 cut(s)	238, 263, 373
MalI	GATC	3 cut(s)	428, 612, 648
MboI	GATC	3 cut(s)	426, 610, 646
MboII	GAAGA	2 cut(s)	64, 121
MfeI	CAATTG	1 cut(s)	95
MluCI	AATT	4 cut(s)	95, 574, 636, 727
MlyI	GAGTC	1 cut(s)	85
MnlI	CCTC	9 cut(s)	10, 40, 170, 174, 349, 382, 414, 574, 649
MroNI	GCCGGC	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	324
MspI	CCGG	6 cut(s)	156, 186, 228, 316, 364, 552
MspR9I	CCNGG	1 cut(s)	317
MunI	CAATTG	1 cut(s)	95
MvnI	CGCG	3 cut(s)	211, 244, 313
MwoI	GCNNNNNNNGC	2 cut(s)	252, 555
NaeI	GCCGGC	1 cut(s)	187
NciI	CCSGG	1 cut(s)	317
NcoI	CCATGG	1 cut(s)	453
NdeII	GATC	3 cut(s)	426, 610, 646
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	4 cut(s)	118, 226, 457, 541
NlaIV	GGNNCC	4 cut(s)	71, 142, 190, 692
NmuCI	GTSAC	2 cut(s)	238, 263
NspI	RCATGY	1 cut(s)	118
NspV	TTCGAA	1 cut(s)	572
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 273, 569
PdiI	GCCGGC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	2 cut(s)	55, 339
PflMI	CCANNNNNTGG	1 cut(s)	181
PinAI	ACCGGT	1 cut(s)	551
PkrI	GCNGC	2 cut(s)	248, 567
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PsiI	TTATAA	1 cut(s)	447
PspFI	CCCAGC	1 cut(s)	255
PspN4I	GGNNCC	4 cut(s)	71, 142, 190, 692
PspPI	GGNCC	4 cut(s)	69, 140, 511, 690
RsaI	GTAC	3 cut(s)	125, 350, 545
RsaNI	GTAC	3 cut(s)	124, 349, 544
SatI	GCNGC	2 cut(s)	247, 566
Sau3AI	GATC	3 cut(s)	426, 610, 646
Sau96I	GGNCC	4 cut(s)	69, 140, 511, 690
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	9 cut(s)	12, 129, 240, 303, 327, 405, 425, 537, 747
SfuI	TTCGAA	1 cut(s)	572
SinI	GGWCC	2 cut(s)	69, 690
Sse9I	AATT	4 cut(s)	95, 574, 636, 727
SsiI	CCGC	2 cut(s)	247, 566
SspMI	CTAG	1 cut(s)	699
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	2 cut(s)	129, 240
TaqI	TCGA	7 cut(s)	87, 279, 330, 342, 429, 572, 579
TasI	AATT	4 cut(s)	95, 574, 636, 727
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	2 cut(s)	249, 568
TfiI	GAWTC	2 cut(s)	55, 339
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	2 cut(s)	238, 263
Tsp45I	GTSAC	2 cut(s)	238, 263
TspGWI	ACGGA	1 cut(s)	675
TspRI	CASTG	1 cut(s)	421
Van91I	CCANNNNNTGG	1 cut(s)	181
VpaK11BI	GGWCC	2 cut(s)	69, 690
XapI	RAATTY	2 cut(s)	574, 727
XceI	RCATGY	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.