Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0019947

Physical Location & Seq

Genomic Coordinates Reverse (-)

65719602 .. 65722724

Gene Structure 3123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG405000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCCGGAGTATGTCTTCTACGACGGTCCAGCTTTTGCCACTGGCCTCCCACACTATGGCCACGTATTGGCTGGCACCATCAAGGACATTGTCATGCGCTACCAGTCCATGACTGGCCACCATGTCACGCGCCGCTTTGGCTGGGACTGCCATGGCTTGCCTGTTGAGACCGAGATCGATAAGAAGCTGAACATCAAGACCCGACAAGATGTTCTGAACCTGGGAATTGATGCCTACAATGAAGAATGTAGGAGCTTTGTTACTCGATATGTGGAGGAATGGGAGAAGGTGGTTACTCGCTCGGCGTGGATCGATTTCAGGAATGATTATAAGACTATGGACTTGAAGTTCATGGAGAGTGTGTGGTGGGTTTTTGCTCAATTATATGAAAAGGGTCTTGTTTACAAAGACTTCAAGGTCATGCTTTACAGCACTGGTTGCAAGACACCGCTCTCCAATTTTGAGGCCGGTCAAAATCACAAGGATGTGTCTGATCCTGAAATAATGGTAGCTTTCCCAATTGTCGGTGATCCGGATAAGGCAGCGTTTGTGGCTTGGACAACTACTCCATGGACCCTTCCTAGCAATTTAGCCCTGTGTGTCAATCCAAATTTAACCTATGTGAAGGTTTGCAACAGGTGTTCTGGAAGAGTTTATGTCGTTGCTGAATCCCGGGTTTCATCTCTACCTAGTGAGAGACCTAGAAGAGCTGCTTATGACTGTTCAAACATTTATGAAGTGTTGGAGAGATTCTCAGGGACTACACTAGTGGGAAAGAAGTATGAGCCACTTTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004822 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006428 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0019899 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051020 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1

Protein Analysis

266

Amino Acids

30.6

Weight (kDa)

6.32

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	2 - 166	2.3e-61	tRNA synthetases class I (I, L, M and V)
tRNA-synt_1g	PF09334	12 - 152	5.9e-08	tRNA synthetases class I (M)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019947)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0060211
rosa_multiflora	Rmu_sc0000493.1_g000054 Rmu_sc0003366.1_g000006 Rmu_sc0007120.1_g000001 Rmu_ssc0000039.1_g000002
rosa_samantha	Rh5BG405000 Rh5CG429100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
AasI	GACNNNNNNGTC	1 cut(s)	416
AccB1I	GGYRCC	1 cut(s)	74
AccB7I	CCANNNNNTGG	2 cut(s)	56, 67
AccBSI	CCGCTC	1 cut(s)	451
AccII	CGCG	1 cut(s)	130
AccIII	TCCGGA	1 cut(s)	532
AciI	CCGC	2 cut(s)	133, 449
AclWI	GGATC	3 cut(s)	317, 488, 524
AcoI	YGGCCR	2 cut(s)	58, 115
AcsI	RAATTY	1 cut(s)	610
AfiI	CCNNNNNNNGG	3 cut(s)	56, 67, 524
AgsI	TTSAA	3 cut(s)	346, 415, 726
AhlI	ACTAGT	1 cut(s)	766
AjnI	CCWGG	1 cut(s)	219
AloI	GAACNNNNNNTCC	2 cut(s)	332, 364
AluBI	AGCT	5 cut(s)	32, 187, 255, 512, 710
AluI	AGCT	5 cut(s)	32, 187, 255, 512, 710
Alw26I	GTCTC	2 cut(s)	161, 691
AlwI	GGATC	3 cut(s)	317, 488, 524
Ama87I	CYCGRG	1 cut(s)	672
Aor13HI	TCCGGA	1 cut(s)	532
AoxI	GGCC	4 cut(s)	43, 58, 115, 465
ApeKI	GCWGC	2 cut(s)	542, 710
ApoI	RAATTY	1 cut(s)	610
AspLEI	GCGC	2 cut(s)	99, 132
AspS9I	GGNCC	2 cut(s)	26, 573
AsuC2I	CCSGG	2 cut(s)	673, 674
AsuHPI	GGTGA	1 cut(s)	539
AvaI	CYCGRG	1 cut(s)	672
AvaII	GGWCC	2 cut(s)	26, 573
BalI	TGGCCA	2 cut(s)	60, 117
BanI	GGYRCC	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	7
BbvI	GCAGC	2 cut(s)	554, 697
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	221
BcnI	CCSGG	2 cut(s)	673, 674
BcoDI	GTCTC	2 cut(s)	161, 691
BcuI	ACTAGT	1 cut(s)	766
BfaI	CTAG	4 cut(s)	582, 690, 702, 767
BglI	GCCNNNNNGGC	1 cut(s)	138
BisI	GCNGC	3 cut(s)	133, 543, 711
BlsI	GCNGC	3 cut(s)	134, 544, 712
Bme1390I	CCNGG	3 cut(s)	221, 673, 674
Bme18I	GGWCC	2 cut(s)	26, 573
BmeT110I	CYCGRG	1 cut(s)	672
BmgT120I	GGNCC	2 cut(s)	26, 573
BmiI	GGNNCC	2 cut(s)	76, 575
BmrFI	CCNGG	3 cut(s)	221, 673, 674
BmsI	GCATC	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	7
BplI	GAGNNNNNCTC	2 cut(s)	737, 769
BpuMI	CCSGG	2 cut(s)	673, 674
Bsa29I	ATCGAT	2 cut(s)	177, 312
BsaAI	YACGTR	1 cut(s)	64
BsaI	GGTCTC	2 cut(s)	161, 691
BsaJI	CCNNGG	4 cut(s)	151, 220, 569, 672
BsaWI	WCCGGW	1 cut(s)	532
BsaXI	ACNNNNNCTCC	4 cut(s)	347, 377, 550, 580
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 67, 524
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	4 cut(s)	46, 103, 118, 439
BseAI	TCCGGA	1 cut(s)	532
BseBI	CCWGG	1 cut(s)	221
BseCI	ATCGAT	2 cut(s)	177, 312
BseDI	CCNNGG	4 cut(s)	151, 220, 569, 672
BseGI	GGATG	1 cut(s)	490
BseLI	CCNNNNNNNGG	3 cut(s)	56, 67, 524
BseMII	CTCAG	1 cut(s)	768
BseNI	ACTGG	4 cut(s)	46, 103, 118, 439
BseXI	GCAGC	2 cut(s)	554, 697
BseYI	CCCAGC	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	130
BshFI	GGCC	4 cut(s)	45, 60, 117, 467
BshNI	GGYRCC	1 cut(s)	74
BshVI	ATCGAT	2 cut(s)	177, 312
BsiHKCI	CYCGRG	1 cut(s)	672
BsiSI	CCGG	4 cut(s)	5, 468, 533, 673
BslFI	GGGAC	2 cut(s)	158, 772
BslI	CCNNNNNNNGG	3 cut(s)	56, 67, 524
BsmAI	GTCTC	2 cut(s)	161, 691
BsmFI	GGGAC	2 cut(s)	158, 772
BsnI	GGCC	4 cut(s)	45, 60, 117, 467
Bso31I	GGTCTC	2 cut(s)	161, 691
BsoBI	CYCGRG	1 cut(s)	672
Bsp13I	TCCGGA	1 cut(s)	532
Bsp143I	GATC	4 cut(s)	174, 309, 493, 529
Bsp19I	CCATGG	2 cut(s)	151, 569
BspACI	CCGC	2 cut(s)	133, 449
BspANI	GGCC	4 cut(s)	45, 60, 117, 467
BspCNI	CTCAG	1 cut(s)	767
BspDI	ATCGAT	2 cut(s)	177, 312
BspEI	TCCGGA	1 cut(s)	532
BspFNI	CGCG	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	76, 575
BspPI	GGATC	3 cut(s)	317, 488, 524
BspQI	GCTCTTC	1 cut(s)	700
BspT107I	GGYRCC	1 cut(s)	74
BspTNI	GGTCTC	2 cut(s)	161, 691
BsrBI	CCGCTC	1 cut(s)	451
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	4 cut(s)	46, 103, 118, 439
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	4 cut(s)	151, 220, 569, 672
BssMI	GATC	4 cut(s)	174, 309, 493, 529
BssT1I	CCWWGG	2 cut(s)	151, 569
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	26, 722
Bst6I	CTCTTC	2 cut(s)	643, 700
BstAPI	GCANNNNNTGC	1 cut(s)	438
BstBAI	YACGTR	1 cut(s)	64
BstC8I	GCNNGC	2 cut(s)	73, 158
BstDEI	CTNAG	1 cut(s)	754
BstDSI	CCRYGG	2 cut(s)	151, 569
BstF5I	GGATG	1 cut(s)	490
BstFNI	CGCG	1 cut(s)	130
BstHHI	GCGC	2 cut(s)	99, 132
BstKTI	GATC	4 cut(s)	177, 312, 496, 532
BstMAI	GTCTC	2 cut(s)	161, 691
BstMBI	GATC	4 cut(s)	174, 309, 493, 529
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 147, 438, 551
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	3 cut(s)	219, 671, 672
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	554, 697
BstV2I	GAAGAC	1 cut(s)	7
Bsu15I	ATCGAT	2 cut(s)	177, 312
BsuRI	GGCC	4 cut(s)	45, 60, 117, 467
BsuTUI	ATCGAT	2 cut(s)	177, 312
BtgI	CCRYGG	2 cut(s)	151, 569
BtsCI	GGATG	1 cut(s)	490
BtsIMutI	CAGTG	2 cut(s)	39, 432
Cac8I	GCNNGC	2 cut(s)	73, 158
CfoI	GCGC	2 cut(s)	99, 132
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	2 cut(s)	26, 573
Cfr9I	CCCGGG	1 cut(s)	672
ClaI	ATCGAT	2 cut(s)	177, 312
CviAII	CATG	7 cut(s)	94, 109, 122, 152, 352, 421, 570
DdeI	CTNAG	1 cut(s)	754
DpnI	GATC	4 cut(s)	176, 311, 495, 531
DpnII	GATC	4 cut(s)	174, 309, 493, 529
DrdI	GACNNNNNNGTC	1 cut(s)	416
DseDI	GACNNNNNNGTC	1 cut(s)	416
EaeI	YGGCCR	2 cut(s)	58, 115
Eam1104I	CTCTTC	2 cut(s)	643, 700
EarI	CTCTTC	2 cut(s)	643, 700
Eco130I	CCWWGG	2 cut(s)	151, 569
Eco31I	GGTCTC	2 cut(s)	161, 691
Eco47I	GGWCC	2 cut(s)	26, 573
Eco88I	CYCGRG	1 cut(s)	672
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	2 cut(s)	151, 569
ErhI	CCWWGG	2 cut(s)	151, 569
FaeI	CATG	7 cut(s)	97, 112, 125, 155, 355, 424, 573
FalI	AAGNNNNNCTT	2 cut(s)	697, 729
FaqI	GGGAC	2 cut(s)	158, 772
FatI	CATG	7 cut(s)	93, 108, 121, 151, 351, 420, 569
Fnu4HI	GCNGC	3 cut(s)	133, 543, 711
FokI	GGATG	1 cut(s)	497
Fsp4HI	GCNGC	3 cut(s)	133, 543, 711
FspBI	CTAG	4 cut(s)	582, 690, 702, 767
GlaI	GCGC	2 cut(s)	98, 131
GluI	GCNGC	3 cut(s)	133, 543, 711
GsaI	CCCAGC	1 cut(s)	145
HaeIII	GGCC	4 cut(s)	45, 60, 117, 467
HapII	CCGG	4 cut(s)	5, 468, 533, 673
HhaI	GCGC	2 cut(s)	99, 132
Hin1II	CATG	7 cut(s)	97, 112, 125, 155, 355, 424, 573
Hin6I	GCGC	2 cut(s)	97, 130
HinP1I	GCGC	2 cut(s)	97, 130
HinfI	GANTC	2 cut(s)	668, 750
HpaII	CCGG	4 cut(s)	5, 468, 533, 673
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	2 cut(s)	216, 493
Hpy188III	TCNNGA	5 cut(s)	196, 319, 497, 533, 645
Hpy8I	GTNNAC	1 cut(s)	403
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	3 cut(s)	280, 587, 619
HpyCH4III	ACNGT	2 cut(s)	26, 722
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	2 cut(s)	441, 633
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 147, 438, 551
HpyF3I	CTNAG	1 cut(s)	754
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	7 cut(s)	97, 112, 125, 155, 355, 424, 573
HspAI	GCGC	2 cut(s)	97, 130
Kpn2I	TCCGGA	1 cut(s)	532
Kzo9I	GATC	4 cut(s)	174, 309, 493, 529
LguI	GCTCTTC	1 cut(s)	700
LmnI	GCTCC	1 cut(s)	252
Lsp1109I	GCAGC	2 cut(s)	554, 697
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	4 cut(s)	582, 690, 702, 767
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	3 cut(s)	124, 259, 292
MalI	GATC	4 cut(s)	176, 311, 495, 531
MbiI	CCGCTC	1 cut(s)	451
MboI	GATC	4 cut(s)	174, 309, 493, 529
MboII	GAAGA	4 cut(s)	7, 254, 660, 717
MfeI	CAATTG	1 cut(s)	519
MlsI	TGGCCA	2 cut(s)	60, 117
MluCI	AATT	6 cut(s)	225, 380, 457, 519, 586, 610
MluNI	TGGCCA	2 cut(s)	60, 117
MmeI	TCCRAC	1 cut(s)	723
MnlI	CCTC	3 cut(s)	56, 268, 457
Mox20I	TGGCCA	2 cut(s)	60, 117
MroI	TCCGGA	1 cut(s)	532
MscI	TGGCCA	2 cut(s)	60, 117
MseI	TTAA	2 cut(s)	614, 799
MslI	CAYNNNNRTG	2 cut(s)	92, 483
Msp20I	TGGCCA	2 cut(s)	60, 117
MspI	CCGG	4 cut(s)	5, 468, 533, 673
MspR9I	CCNGG	3 cut(s)	221, 673, 674
MunI	CAATTG	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	4 cut(s)	138, 147, 438, 551
NciI	CCSGG	2 cut(s)	673, 674
NcoI	CCATGG	2 cut(s)	151, 569
NdeII	GATC	4 cut(s)	174, 309, 493, 529
NlaIII	CATG	7 cut(s)	97, 112, 125, 155, 355, 424, 573
NlaIV	GGNNCC	2 cut(s)	76, 575
NmeAIII	GCCGAG	1 cut(s)	281
NmuCI	GTSAC	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	700
PfeI	GAWTC	2 cut(s)	668, 750
PflFI	GACNNNGTC	1 cut(s)	89
PflMI	CCANNNNNTGG	2 cut(s)	56, 67
PkrI	GCNGC	3 cut(s)	134, 544, 712
Ppu21I	YACGTR	1 cut(s)	64
PsiI	TTATAA	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	219
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	2 cut(s)	76, 575
PspPI	GGNCC	2 cut(s)	26, 573
PsyI	GACNNNGTC	1 cut(s)	89
RseI	CAYNNNNRTG	2 cut(s)	92, 483
SapI	GCTCTTC	1 cut(s)	700
SaqAI	TTAA	2 cut(s)	614, 799
SatI	GCNGC	3 cut(s)	133, 543, 711
Sau3AI	GATC	4 cut(s)	174, 309, 493, 529
Sau96I	GGNCC	2 cut(s)	26, 573
ScrFI	CCNGG	3 cut(s)	221, 673, 674
SfaNI	GCATC	1 cut(s)	220
SinI	GGWCC	2 cut(s)	26, 573
SmaI	CCCGGG	1 cut(s)	674
SmiMI	CAYNNNNRTG	2 cut(s)	92, 483
SpeI	ACTAGT	1 cut(s)	766
Sse9I	AATT	6 cut(s)	225, 380, 457, 519, 586, 610
SsiI	CCGC	2 cut(s)	133, 449
SspMI	CTAG	4 cut(s)	582, 690, 702, 767
StyD4I	CCNGG	3 cut(s)	219, 671, 672
StyI	CCWWGG	2 cut(s)	151, 569
TaaI	ACNGT	2 cut(s)	26, 722
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	3 cut(s)	177, 265, 312
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	6 cut(s)	225, 380, 457, 519, 586, 610
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	668, 750
Tru1I	TTAA	2 cut(s)	614, 799
Tru9I	TTAA	2 cut(s)	614, 799
TscAI	CASTG	2 cut(s)	46, 439
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	2 cut(s)	542, 710
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	5 cut(s)	255, 340, 402, 669, 750
TspMI	CCCGGG	1 cut(s)	672
TspRI	CASTG	2 cut(s)	46, 439
Tth111I	GACNNNGTC	1 cut(s)	89
Van91I	CCANNNNNTGG	2 cut(s)	56, 67
VpaK11BI	GGWCC	2 cut(s)	26, 573
XapI	RAATTY	1 cut(s)	610
XcmI	CCANNNNNNNNNTGG	2 cut(s)	68, 110
XmaI	CCCGGG	1 cut(s)	672
XspI	CTAG	4 cut(s)	582, 690, 702, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.