Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000516.1

Orthogroup ID

OG0025483

Physical Location & Seq

Genomic Coordinates Reverse (-)

71018 .. 75241

Gene Structure 4224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000516.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atggttaggcttgatgagatgaagaggagcagcctggtcctgacaccattggtggtggtcggcggcggctcggcccctaaatccagcggccctttccggccacctccgggggttgattctgaatctattatagctggtaaggctgctattggaggtttgttgggtggcatcggctatctctttggccagtcaaagattgcccttcctatggatgcgaatgatgattctattttatattggcctgctgagctttacacagctgttccaagtcgacctttctttccagggggatctttgtgggctgaaggctttcatcagctcttgatctggcgttgggatacacgtatttctttggacattataggacattggctagatctgatgaatgttgatggatgggttccacaggagcacattttaggtgccgaagttgtcagtaaagctcagcttccatcaagtggaaattcaccgactctatttttagtattacatgaactacttcatggtttaaaggaaaataagttcactgctcccgaaagcgatgagatatcttcattcctaaaacgggctttggttcgcctagaagcatggtttcagtatttcaacactacccattcaggaaaagaggttggcacctactactggcatggaagagaccagacaacaatgtgggaactaaatccgcagacccagtcttccggatttggtgattatcctcgcgcttctcacccaagtgaggatgaacgtcatgtagatcttagatgctggatgcttgttgcagcagactgcatgcattccatttcgaagctttttgaggaggatgataaattcggaaaggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004573 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04141 map00510 map01100 map04141

Pfam Domains

Protein Families

Glyco_hydro_63 Glyco_hydro_63N

Protein Analysis

280

Amino Acids

31.19

Weight (kDa)

5.44

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000516.1_g000019 Rmu_sc0015060.1_g000002
rosa_samantha	Rh2BG460100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	422, 632
AccB7I	CCANNNNNTGG	1 cut(s)	458
AccI	GTMKAC	1 cut(s)	271
AccII	CGCG	1 cut(s)	720
AccIII	TCCGGA	1 cut(s)	698
AciI	CCGC	4 cut(s)	63, 66, 87, 683
AclWI	GGATC	1 cut(s)	298
AcoI	YGGCCR	2 cut(s)	98, 184
AcsI	RAATTY	2 cut(s)	463, 827
AcuI	CTGAAG	1 cut(s)	324
AfiI	CCNNNNNNNGG	6 cut(s)	107, 208, 458, 565, 642, 736
AflIII	ACRYGT	1 cut(s)	341
AgsI	TTSAA	1 cut(s)	604
AjnI	CCWGG	2 cut(s)	33, 283
AleI	CACNNNNGTG	1 cut(s)	732
AloI	GAACNNNNNNTCC	2 cut(s)	506, 538
AluBI	AGCT	7 cut(s)	134, 250, 260, 319, 443, 448, 808
AluI	AGCT	7 cut(s)	134, 250, 260, 319, 443, 448, 808
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	1 cut(s)	648
AlwI	GGATC	1 cut(s)	298
Aor13HI	TCCGGA	1 cut(s)	698
AoxI	GGCC	5 cut(s)	72, 88, 98, 184, 239
ApeKI	GCWGC	3 cut(s)	30, 143, 779
ApoI	RAATTY	2 cut(s)	463, 827
Asp700I	GAANNNNTTC	2 cut(s)	309, 498
AspLEI	GCGC	1 cut(s)	722
AspS9I	GGNCC	3 cut(s)	37, 73, 89
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	3 cut(s)	459, 719, 719
AsuII	TTCGAA	1 cut(s)	803
AvaII	GGWCC	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	186
BanI	GGYRCC	2 cut(s)	422, 632
BbsI	GAAGAC	1 cut(s)	687
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	3 cut(s)	42, 130, 791
BccI	CCATC	3 cut(s)	386, 390, 460
BciT130I	CCWGG	2 cut(s)	35, 285
BciVI	GTATCC	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	648
BfaI	CTAG	2 cut(s)	374, 581
BfuI	GTATCC	1 cut(s)	331
BglII	AGATCT	2 cut(s)	376, 754
BisI	GCNGC	6 cut(s)	31, 64, 67, 88, 144, 780
BlpI	GCTNAGC	2 cut(s)	246, 444
BlsI	GCNGC	6 cut(s)	32, 65, 68, 89, 145, 781
Bme1390I	CCNGG	3 cut(s)	35, 108, 285
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	3 cut(s)	37, 73, 89
BmiI	GGNNCC	4 cut(s)	75, 402, 424, 634
BmrFI	CCNGG	3 cut(s)	35, 108, 285
BmrI	ACTGGG	1 cut(s)	685
BmsI	GCATC	4 cut(s)	177, 202, 752, 759
BmuI	ACTGGG	1 cut(s)	685
BpiI	GAAGAC	1 cut(s)	687
Bpu1102I	GCTNAGC	2 cut(s)	246, 444
Bpu14I	TTCGAA	1 cut(s)	803
BpuMI	CCSGG	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	648
BsaJI	CCNNGG	2 cut(s)	107, 284
BsaWI	WCCGGW	1 cut(s)	698
Bsc4I	CCNNNNNNNGG	6 cut(s)	107, 208, 458, 565, 642, 736
Bse1I	ACTGG	3 cut(s)	187, 647, 691
BseAI	TCCGGA	1 cut(s)	698
BseBI	CCWGG	2 cut(s)	35, 285
BseDI	CCNNGG	2 cut(s)	107, 284
BseGI	GGATG	5 cut(s)	217, 401, 745, 774, 826
BseLI	CCNNNNNNNGG	6 cut(s)	107, 208, 458, 565, 642, 736
BseMII	CTCAG	2 cut(s)	237, 458
BseNI	ACTGG	3 cut(s)	187, 647, 691
BseRI	GAGGAG	2 cut(s)	40, 830
BseXI	GCAGC	3 cut(s)	42, 130, 791
Bsh1236I	CGCG	1 cut(s)	720
BshFI	GGCC	5 cut(s)	74, 90, 100, 186, 241
BshNI	GGYRCC	2 cut(s)	422, 632
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	3 cut(s)	97, 107, 699
BslI	CCNNNNNNNGG	6 cut(s)	107, 208, 458, 565, 642, 736
BsmAI	GTCTC	1 cut(s)	648
BsmI	GAATGC	1 cut(s)	793
BsnI	GGCC	5 cut(s)	74, 90, 100, 186, 241
Bso31I	GGTCTC	1 cut(s)	648
Bsp119I	TTCGAA	1 cut(s)	803
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp13I	TCCGGA	1 cut(s)	698
Bsp143I	GATC	4 cut(s)	290, 324, 376, 754
Bsp1720I	GCTNAGC	2 cut(s)	246, 444
BspACI	CCGC	4 cut(s)	63, 66, 87, 683
BspANI	GGCC	5 cut(s)	74, 90, 100, 186, 241
BspCNI	CTCAG	2 cut(s)	238, 457
BspEI	TCCGGA	1 cut(s)	698
BspFNI	CGCG	1 cut(s)	720
BspLI	GGNNCC	4 cut(s)	75, 402, 424, 634
BspPI	GGATC	1 cut(s)	298
BspT104I	TTCGAA	1 cut(s)	803
BspT107I	GGYRCC	2 cut(s)	422, 632
BspTNI	GGTCTC	1 cut(s)	648
BsrI	ACTGG	3 cut(s)	187, 647, 691
BssECI	CCNNGG	2 cut(s)	107, 284
BssMI	GATC	4 cut(s)	290, 324, 376, 754
Bst2UI	CCWGG	2 cut(s)	35, 285
Bst6I	CTCTTC	2 cut(s)	17, 646
BstBAI	YACGTR	1 cut(s)	344
BstBI	TTCGAA	1 cut(s)	803
BstC8I	GCNNGC	2 cut(s)	243, 791
BstDEI	CTNAG	3 cut(s)	246, 444, 758
BstF5I	GGATG	5 cut(s)	217, 401, 745, 774, 826
BstFNI	CGCG	1 cut(s)	720
BstHHI	GCGC	1 cut(s)	722
BstKTI	GATC	4 cut(s)	293, 327, 379, 757
BstMAI	GTCTC	1 cut(s)	648
BstMBI	GATC	4 cut(s)	290, 324, 376, 754
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 247
BstNI	CCWGG	2 cut(s)	35, 285
BstNSI	RCATGY	1 cut(s)	793
BstSCI	CCNGG	3 cut(s)	33, 106, 283
BstUI	CGCG	1 cut(s)	720
BstV1I	GCAGC	3 cut(s)	42, 130, 791
BstV2I	GAAGAC	1 cut(s)	687
BstX2I	RGATCY	3 cut(s)	290, 376, 754
BstYI	RGATCY	3 cut(s)	290, 376, 754
BsuI	GTATCC	1 cut(s)	331
BsuRI	GGCC	5 cut(s)	74, 90, 100, 186, 241
BtgZI	GCGATG	1 cut(s)	555
BtsCI	GGATG	5 cut(s)	217, 401, 745, 774, 826
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	1 cut(s)	525
Cac8I	GCNNGC	2 cut(s)	243, 791
CfoI	GCGC	1 cut(s)	722
Cfr13I	GGNCC	3 cut(s)	37, 73, 89
CviAII	CATG	6 cut(s)	491, 503, 588, 647, 749, 790
DdeI	CTNAG	3 cut(s)	246, 444, 758
DpnI	GATC	4 cut(s)	292, 326, 378, 756
DpnII	GATC	4 cut(s)	290, 324, 376, 754
DraI	TTTAAA	1 cut(s)	510
EaeI	YGGCCR	2 cut(s)	98, 184
Eam1104I	CTCTTC	2 cut(s)	17, 646
EarI	CTCTTC	2 cut(s)	17, 646
Eco31I	GGTCTC	1 cut(s)	648
Eco32I	GATATC	1 cut(s)	549
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	324
EcoRII	CCWGG	2 cut(s)	33, 283
EcoRV	GATATC	1 cut(s)	549
EcoT22I	ATGCAT	1 cut(s)	795
FaeI	CATG	6 cut(s)	494, 506, 591, 650, 752, 793
FalI	AAGNNNNNCTT	4 cut(s)	259, 291, 432, 464
FatI	CATG	6 cut(s)	490, 502, 587, 646, 748, 789
FblI	GTMKAC	1 cut(s)	271
Fnu4HI	GCNGC	6 cut(s)	31, 64, 67, 88, 144, 780
FokI	GGATG	5 cut(s)	224, 408, 752, 781, 833
Fsp4HI	GCNGC	6 cut(s)	31, 64, 67, 88, 144, 780
FspBI	CTAG	2 cut(s)	374, 581
GlaI	GCGC	1 cut(s)	721
GluI	GCNGC	6 cut(s)	31, 64, 67, 88, 144, 780
HaeIII	GGCC	5 cut(s)	74, 90, 100, 186, 241
HapII	CCGG	3 cut(s)	97, 107, 699
HhaI	GCGC	1 cut(s)	722
Hin1II	CATG	6 cut(s)	494, 506, 591, 650, 752, 793
Hin6I	GCGC	1 cut(s)	720
HinP1I	GCGC	1 cut(s)	720
HincII	GTYRAC	1 cut(s)	272
HindII	GTYRAC	1 cut(s)	272
HindIII	AAGCTT	1 cut(s)	806
HinfI	GANTC	4 cut(s)	116, 122, 224, 472
HpaII	CCGG	3 cut(s)	97, 107, 699
HphI	GGTGA	3 cut(s)	459, 719, 719
Hpy166II	GTNNAC	2 cut(s)	272, 525
Hpy188I	TCNGA	3 cut(s)	121, 381, 833
Hpy188III	TCNNGA	5 cut(s)	40, 322, 533, 618, 699
Hpy8I	GTNNAC	2 cut(s)	272, 525
HpyAV	CCTTC	2 cut(s)	212, 299
HpyCH4IV	ACGT	2 cut(s)	343, 745
HpyCH4V	TGCA	3 cut(s)	779, 789, 793
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 247
HpyF3I	CTNAG	3 cut(s)	246, 444, 758
HpySE526I	ACGT	2 cut(s)	343, 745
Hsp92II	CATG	6 cut(s)	494, 506, 591, 650, 752, 793
HspAI	GCGC	1 cut(s)	720
Kpn2I	TCCGGA	1 cut(s)	698
Kzo9I	GATC	4 cut(s)	290, 324, 376, 754
LmnI	GCTCC	3 cut(s)	27, 409, 535
Lsp1109I	GCAGC	3 cut(s)	42, 130, 791
LweI	GCATC	4 cut(s)	177, 202, 752, 759
MaeI	CTAG	2 cut(s)	374, 581
MaeII	ACGT	2 cut(s)	343, 745
MalI	GATC	4 cut(s)	292, 326, 378, 756
MboI	GATC	4 cut(s)	290, 324, 376, 754
MboII	GAAGA	4 cut(s)	34, 543, 663, 687
MflI	RGATCY	3 cut(s)	290, 376, 754
MhlI	GDGCHC	1 cut(s)	414
MlsI	TGGCCA	1 cut(s)	186
MluCI	AATT	2 cut(s)	463, 827
MluNI	TGGCCA	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	466
MnlI	CCTC	8 cut(s)	18, 114, 146, 619, 726, 730, 808, 811
Mox20I	TGGCCA	1 cut(s)	186
Mph1103I	ATGCAT	1 cut(s)	795
MroI	TCCGGA	1 cut(s)	698
MroXI	GAANNNNTTC	2 cut(s)	309, 498
MscI	TGGCCA	1 cut(s)	186
MseI	TTAA	1 cut(s)	509
MslI	CAYNNNNRTG	1 cut(s)	732
Msp20I	TGGCCA	1 cut(s)	186
MspA1I	CMGCKG	2 cut(s)	87, 260
MspI	CCGG	3 cut(s)	97, 107, 699
MspR9I	CCNGG	3 cut(s)	35, 108, 285
Mva1269I	GAATGC	1 cut(s)	793
MvaI	CCWGG	2 cut(s)	35, 285
MvnI	CGCG	1 cut(s)	720
MwoI	GCNNNNNNNGC	2 cut(s)	140, 247
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	4 cut(s)	290, 324, 376, 754
NlaIII	CATG	6 cut(s)	494, 506, 591, 650, 752, 793
NlaIV	GGNNCC	4 cut(s)	75, 402, 424, 634
NmeAIII	GCCGAG	1 cut(s)	50
NsiI	ATGCAT	1 cut(s)	795
NspI	RCATGY	1 cut(s)	793
NspV	TTCGAA	1 cut(s)	803
OliI	CACNNNNGTG	1 cut(s)	732
PaeI	GCATGC	1 cut(s)	793
PctI	GAATGC	1 cut(s)	793
PdmI	GAANNNNTTC	2 cut(s)	309, 498
PfeI	GAWTC	3 cut(s)	116, 122, 224
PflFI	GACNNNGTC	1 cut(s)	691
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	6 cut(s)	32, 65, 68, 89, 145, 781
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
Ppu21I	YACGTR	1 cut(s)	344
Psp6I	CCWGG	2 cut(s)	33, 283
PspGI	CCWGG	2 cut(s)	33, 283
PspN4I	GGNNCC	4 cut(s)	75, 402, 424, 634
PspPI	GGNCC	3 cut(s)	37, 73, 89
PsuI	RGATCY	3 cut(s)	290, 376, 754
PsyI	GACNNNGTC	1 cut(s)	691
PvuII	CAGCTG	1 cut(s)	260
RseI	CAYNNNNRTG	1 cut(s)	732
SalI	GTCGAC	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	6 cut(s)	31, 64, 67, 88, 144, 780
Sau3AI	GATC	4 cut(s)	290, 324, 376, 754
Sau96I	GGNCC	3 cut(s)	37, 73, 89
SchI	GAGTC	1 cut(s)	466
ScrFI	CCNGG	3 cut(s)	35, 108, 285
SduI	GDGCHC	1 cut(s)	414
SfaNI	GCATC	4 cut(s)	177, 202, 752, 759
SfuI	TTCGAA	1 cut(s)	803
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	732
SphI	GCATGC	1 cut(s)	793
Sse9I	AATT	2 cut(s)	463, 827
SsiI	CCGC	4 cut(s)	63, 66, 87, 683
SspMI	CTAG	2 cut(s)	374, 581
StyD4I	CCNGG	3 cut(s)	33, 106, 283
TaiI	ACGT	2 cut(s)	346, 748
TaqI	TCGA	2 cut(s)	271, 803
TasI	AATT	2 cut(s)	463, 827
TauI	GCSGC	3 cut(s)	66, 69, 90
TfiI	GAWTC	3 cut(s)	116, 122, 224
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	1 cut(s)	532
TseI	GCWGC	3 cut(s)	30, 143, 779
TspDTI	ATGAA	7 cut(s)	35, 302, 398, 491, 507, 543, 756
TspRI	CASTG	1 cut(s)	532
Tth111I	GACNNNGTC	1 cut(s)	691
Van91I	CCANNNNNTGG	1 cut(s)	458
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	2 cut(s)	463, 827
XceI	RCATGY	1 cut(s)	793
XmiI	GTMKAC	1 cut(s)	271
XmnI	GAANNNNTTC	2 cut(s)	309, 498
XspI	CTAG	2 cut(s)	374, 581
Zsp2I	ATGCAT	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.