Rh2BG460100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
65090973 .. 65093190
2218 bp
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UTR
Exon/CDS
Intron
Rh2BG460100.1

Sequence Viewer

Length: 408 bp
ATGATGGCAGACAATGGTGGCGGACAAGTTGGTGGCTGGCCGAACAAAGAGAAACACAAGCAGAGCTATTTCTTAGCAGCCCAGAATTTCTCCGCCACTGCCGCCGCTGCTGCCGCCGCCGCTCTGCTCCGTCAAATCTTTTCTTTGAAGTCTTGGCCCAATTCATCAACAGCTGTGGGAGTATCTCGGCTCAATCCCTTTGTCAGCTGCCGCTTCGCCAGCCACCACACCAACAGCAGCAGGTCGGTCACGTCTCAGCCACAACGCTTGTTGACGAACGCACAGCAGCTTCGTCCAAAATCAGCAGTAGTTCAGCCCAGTCCAAACCATCACCTCGCTCATAACTTTGGTTACCTTCACTCAAGCATCCGCTTAGTCCAAAATCTGCAGCAGTCTAGCCCAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.6

Weight (kDa)

11.36

Isoelectric Point (pI)

58.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000516.1_g000019 Rmu_sc0015060.1_g000002
rosa_samantha Rh2BG460100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 231
AccBSI CCGCTC 1 cut(s) 122
AciI CCGC 9 cut(s) 21, 93, 102, 105, 114, 117, 120, 211, 370
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 1 cut(s) 85
AgsI TTSAA 1 cut(s) 148
AjiI CACGTC 1 cut(s) 252
AluBI AGCT 4 cut(s) 66, 173, 207, 289
AluI AGCT 4 cut(s) 66, 173, 207, 289
Alw26I GTCTC 1 cut(s) 258
AoxI GGCC 2 cut(s) 38, 155
ApeKI GCWGC 7 cut(s) 77, 107, 110, 207, 237, 286, 388
ApoI RAATTY 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 323
BbvI GCAGC 7 cut(s) 89, 94, 97, 194, 249, 298, 400
BccI CCATC 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 1 cut(s) 396
BfmI CTRYAG 1 cut(s) 386
BfuAI ACCTGC 1 cut(s) 231
BmgBI CACGTC 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 156
BmrI ACTGGG 2 cut(s) 312, 395
BmsI GCATC 1 cut(s) 375
BmuI ACTGGG 2 cut(s) 312, 395
BpuEI CTTGAG 1 cut(s) 346
Bse1I ACTGG 2 cut(s) 318, 401
BseGI GGATG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 2 cut(s) 318, 401
BseXI GCAGC 7 cut(s) 89, 94, 97, 194, 249, 298, 400
BshFI GGCC 2 cut(s) 40, 157
BsmAI GTCTC 1 cut(s) 258
BsmBI CGTCTC 1 cut(s) 258
BsnI GGCC 2 cut(s) 40, 157
BspACI CCGC 9 cut(s) 21, 93, 102, 105, 114, 117, 120, 211, 370
BspANI GGCC 2 cut(s) 40, 157
BspCNI CTCAG 1 cut(s) 268
BspMAI CTGCAG 1 cut(s) 390
BspMI ACCTGC 1 cut(s) 231
BsrBI CCGCTC 1 cut(s) 122
BsrI ACTGG 2 cut(s) 318, 401
BstC8I GCNNGC 2 cut(s) 38, 220
BstDEI CTNAG 3 cut(s) 73, 255, 373
BstEII GGTNACC 1 cut(s) 350
BstF5I GGATG 1 cut(s) 366
BstMAI GTCTC 1 cut(s) 258
BstMWI GCNNNNNNNGC 7 cut(s) 101, 107, 110, 113, 116, 119, 219
BstPI GGTNACC 1 cut(s) 350
BstSFI CTRYAG 1 cut(s) 386
BstV1I GCAGC 7 cut(s) 89, 94, 97, 194, 249, 298, 400
BsuRI GGCC 2 cut(s) 40, 157
BtrI CACGTC 1 cut(s) 252
BtsCI GGATG 1 cut(s) 366
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 96
BveI ACCTGC 1 cut(s) 231
Cac8I GCNNGC 2 cut(s) 38, 220
Cfr13I GGNCC 1 cut(s) 156
CspCI CAANNNNNGTGG 4 cut(s) 156, 191, 249, 284
DdeI CTNAG 3 cut(s) 73, 255, 373
EaeI YGGCCR 1 cut(s) 38
EciI GGCGGA 2 cut(s) 36, 82
Eco91I GGTNACC 1 cut(s) 350
EcoO65I GGTNACC 1 cut(s) 350
Esp3I CGTCTC 1 cut(s) 258
FaiI YATR 1 cut(s) 342
FokI GGATG 1 cut(s) 353
FspBI CTAG 1 cut(s) 396
HaeIII GGCC 2 cut(s) 40, 157
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 273
Hpy8I GTNNAC 1 cut(s) 273
HpyAV CCTTC 1 cut(s) 365
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 1 cut(s) 388
HpyF10VI GCNNNNNNNGC 7 cut(s) 101, 107, 110, 113, 116, 119, 219
HpyF3I CTNAG 3 cut(s) 73, 255, 373
HpySE526I ACGT 1 cut(s) 251
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 5 cut(s) 22, 95, 226, 232, 331
Lsp1109I GCAGC 7 cut(s) 89, 94, 97, 194, 249, 298, 400
LweI GCATC 1 cut(s) 375
MaeI CTAG 1 cut(s) 396
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 2 cut(s) 247, 350
MbiI CCGCTC 1 cut(s) 122
MluCI AATT 2 cut(s) 85, 160
MnlI CCTC 1 cut(s) 344
MspA1I CMGCKG 3 cut(s) 107, 173, 207
MwoI GCNNNNNNNGC 7 cut(s) 101, 107, 110, 113, 116, 119, 219
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 247
PspEI GGTNACC 1 cut(s) 350
PspPI GGNCC 1 cut(s) 156
PstI CTGCAG 1 cut(s) 390
PvuII CAGCTG 2 cut(s) 173, 207
Sau96I GGNCC 1 cut(s) 156
SetI ASST 8 cut(s) 68, 175, 209, 245, 254, 291, 336, 357
SfaNI GCATC 1 cut(s) 375
SfcI CTRYAG 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 2 cut(s) 85, 160
SsiI CCGC 9 cut(s) 21, 93, 102, 105, 114, 117, 120, 211, 370
SspMI CTAG 1 cut(s) 396
TaiI ACGT 1 cut(s) 254
TaqII GACCGA 1 cut(s) 235
TasI AATT 2 cut(s) 85, 160
TauI GCSGC 6 cut(s) 104, 107, 116, 119, 122, 213
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 7 cut(s) 77, 107, 110, 207, 237, 286, 388
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 153
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 1 cut(s) 103
XapI RAATTY 1 cut(s) 85
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.