Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015060.1

Orthogroup ID

OG0025483

Physical Location & Seq

Genomic Coordinates Reverse (-)

13613 .. 16476

Gene Structure 2864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015060.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgtgctcaactgttattctgcaacagacttctgaactcatggtattattcttgcaggttgattctgaatctattatagctggtaaggctgctattggagggggatctttgtgggctgaaggctttcatcagctcttgatctggcgttgggatacacgtatttctttggacattataggacattggctagatctgatgaatgttgatggatgggttccacaggagcgcattttaggtgccgaagttaccccgtcttccggatttggtgattatcctcgcgcttctcacccaagtgaggatgaacgtcatgtagatcttagatgctggatgcttcttgcagcagattgcatgctttccatttcgaagctttttgaggaggatgataaattcggaaagaattcctccgccgctgccgccaccgccgctctgctccgtcaaatctcttctttggttcttaggtccttcctctttcttcgaggttgctttccccgacaatcacagtataattttgtaaaagtctggcccaattcatcaacagctgtgggagtatctcggctcaatccctttgtcagctgccgctccgccagccaccgtaccaatagcagcaggacggtcacgtctcagccacgacgtttgttgacgaacgcactcgacacacgacccgccgaccctgatctggaccgctcgacgccgaccaagaaaatttcttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004573 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04141 map00510 map01100 map04141

Pfam Domains

Protein Families

Glyco_hydro_63 Glyco_hydro_63N

Protein Analysis

237

Amino Acids

26.34

Weight (kDa)

7.69

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000516.1_g000019 Rmu_sc0015060.1_g000002
rosa_samantha	Rh2BG460100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	616
Acc36I	ACCTGC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	236
AccBSI	CCGCTC	3 cut(s)	425, 579, 684
AccII	CGCG	1 cut(s)	279
AccIII	TCCGGA	1 cut(s)	257
AciI	CCGC	9 cut(s)	405, 408, 414, 420, 423, 577, 582, 663, 682
AclWI	GGATC	1 cut(s)	112
AcsI	RAATTY	3 cut(s)	386, 397, 702
AcuI	CTGAAG	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	689
AfaI	GTAC	1 cut(s)	595
AfiI	CCNNNNNNNGG	3 cut(s)	257, 295, 676
AflIII	ACRYGT	1 cut(s)	155
AjiI	CACGTC	1 cut(s)	618
AleI	CACNNNNGTG	1 cut(s)	291
AluBI	AGCT	5 cut(s)	80, 133, 367, 539, 573
AluI	AGCT	5 cut(s)	80, 133, 367, 539, 573
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	624
AlwI	GGATC	1 cut(s)	112
Aor13HI	TCCGGA	1 cut(s)	257
AoxI	GGCC	1 cut(s)	521
ApeKI	GCWGC	5 cut(s)	89, 338, 410, 573, 603
ApoI	RAATTY	3 cut(s)	386, 397, 702
Asp700I	GAANNNNTTC	2 cut(s)	123, 397
AspLEI	GCGC	2 cut(s)	228, 281
AspS9I	GGNCC	3 cut(s)	459, 522, 679
AsuHPI	GGTGA	2 cut(s)	278, 278
AsuII	TTCGAA	1 cut(s)	362
AvaII	GGWCC	2 cut(s)	459, 679
BanI	GGYRCC	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	5 cut(s)	76, 350, 397, 560, 615
BccI	CCATC	2 cut(s)	200, 204
BciVI	GTATCC	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	624
BfaI	CTAG	1 cut(s)	188
BfuAI	ACCTGC	1 cut(s)	46
BfuI	GTATCC	1 cut(s)	145
BglII	AGATCT	2 cut(s)	190, 313
BisI	GCNGC	9 cut(s)	90, 339, 408, 411, 414, 423, 574, 577, 604
BlsI	GCNGC	9 cut(s)	91, 340, 409, 412, 415, 424, 575, 578, 605
Bme18I	GGWCC	2 cut(s)	459, 679
BmgBI	CACGTC	1 cut(s)	618
BmgT120I	GGNCC	3 cut(s)	459, 522, 679
BmiI	GGNNCC	2 cut(s)	216, 238
BmsI	GCATC	2 cut(s)	311, 318
BpiI	GAAGAC	1 cut(s)	246
Bpu14I	TTCGAA	1 cut(s)	362
BsaAI	YACGTR	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	689
BsaWI	WCCGGW	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	3 cut(s)	257, 295, 676
BseAI	TCCGGA	1 cut(s)	257
BseGI	GGATG	4 cut(s)	215, 304, 333, 385
BseLI	CCNNNNNNNGG	3 cut(s)	257, 295, 676
BseMII	CTCAG	1 cut(s)	635
BseRI	GAGGAG	1 cut(s)	389
BseXI	GCAGC	5 cut(s)	76, 350, 397, 560, 615
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	523
BshNI	GGYRCC	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	258
BslI	CCNNNNNNNGG	3 cut(s)	257, 295, 676
BsmAI	GTCTC	1 cut(s)	624
BsmBI	CGTCTC	1 cut(s)	624
BsnI	GGCC	1 cut(s)	523
Bsp119I	TTCGAA	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp13I	TCCGGA	1 cut(s)	257
Bsp143I	GATC	5 cut(s)	104, 138, 190, 313, 673
BspACI	CCGC	9 cut(s)	405, 408, 414, 420, 423, 577, 582, 663, 682
BspANI	GGCC	1 cut(s)	523
BspCNI	CTCAG	1 cut(s)	634
BspEI	TCCGGA	1 cut(s)	257
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	216, 238
BspMI	ACCTGC	1 cut(s)	46
BspPI	GGATC	1 cut(s)	112
BspT104I	TTCGAA	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	236
BsrBI	CCGCTC	3 cut(s)	425, 579, 684
BssMI	GATC	5 cut(s)	104, 138, 190, 313, 673
BssNI	GRCGYC	1 cut(s)	689
Bst4CI	ACNGT	4 cut(s)	13, 501, 593, 613
Bst6I	CTCTTC	1 cut(s)	448
BstACI	GRCGYC	1 cut(s)	689
BstBAI	YACGTR	1 cut(s)	158
BstBI	TTCGAA	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	350, 586
BstDEI	CTNAG	4 cut(s)	317, 455, 621, 711
BstF5I	GGATG	4 cut(s)	215, 304, 333, 385
BstFNI	CGCG	1 cut(s)	279
BstHHI	GCGC	2 cut(s)	228, 281
BstKTI	GATC	5 cut(s)	107, 141, 193, 316, 676
BstMAI	GTCTC	1 cut(s)	624
BstMBI	GATC	5 cut(s)	104, 138, 190, 313, 673
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 413, 419, 422, 585
BstNSI	RCATGY	1 cut(s)	352
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	5 cut(s)	76, 350, 397, 560, 615
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	3 cut(s)	104, 190, 313
BstYI	RGATCY	3 cut(s)	104, 190, 313
BsuI	GTATCC	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	523
BtrI	CACGTC	1 cut(s)	618
BtsCI	GGATG	4 cut(s)	215, 304, 333, 385
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	350, 586
CfoI	GCGC	2 cut(s)	228, 281
Cfr13I	GGNCC	3 cut(s)	459, 522, 679
CseI	GACGC	1 cut(s)	697
Csp6I	GTAC	1 cut(s)	594
CspCI	CAANNNNNGTGG	4 cut(s)	522, 557, 615, 650
CviAII	CATG	3 cut(s)	40, 308, 349
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	4 cut(s)	317, 455, 621, 711
DpnI	GATC	5 cut(s)	106, 140, 192, 315, 675
DpnII	GATC	5 cut(s)	104, 138, 190, 313, 673
DrdI	GACNNNNNNGTC	1 cut(s)	616
DseDI	GACNNNNNNGTC	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	448
EarI	CTCTTC	1 cut(s)	448
EciI	GGCGGA	2 cut(s)	394, 571
Eco47I	GGWCC	2 cut(s)	459, 679
Eco57I	CTGAAG	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	397
Esp3I	CGTCTC	1 cut(s)	624
FaeI	CATG	3 cut(s)	43, 311, 352
FaiI	YATR	6 cut(s)	41, 77, 176, 309, 350, 504
FatI	CATG	3 cut(s)	39, 307, 348
FauI	CCCGC	1 cut(s)	670
Fnu4HI	GCNGC	9 cut(s)	90, 339, 408, 411, 414, 423, 574, 577, 604
FokI	GGATG	4 cut(s)	222, 311, 340, 392
Fsp4HI	GCNGC	9 cut(s)	90, 339, 408, 411, 414, 423, 574, 577, 604
FspBI	CTAG	1 cut(s)	188
GlaI	GCGC	2 cut(s)	227, 280
GluI	GCNGC	9 cut(s)	90, 339, 408, 411, 414, 423, 574, 577, 604
HaeIII	GGCC	1 cut(s)	523
HapII	CCGG	1 cut(s)	258
HgaI	GACGC	1 cut(s)	697
HhaI	GCGC	2 cut(s)	228, 281
Hin1I	GRCGYC	1 cut(s)	689
Hin1II	CATG	3 cut(s)	43, 311, 352
Hin6I	GCGC	2 cut(s)	226, 279
HinP1I	GCGC	2 cut(s)	226, 279
HincII	GTYRAC	1 cut(s)	639
HindII	GTYRAC	1 cut(s)	639
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	2 cut(s)	62, 68
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	2 cut(s)	278, 278
Hpy166II	GTNNAC	1 cut(s)	639
Hpy188I	TCNGA	4 cut(s)	34, 67, 195, 392
Hpy188III	TCNNGA	3 cut(s)	136, 258, 677
Hpy8I	GTNNAC	1 cut(s)	639
Hpy99I	CGWCG	2 cut(s)	633, 691
HpyAV	CCTTC	2 cut(s)	113, 472
HpyCH4III	ACNGT	4 cut(s)	13, 501, 593, 613
HpyCH4IV	ACGT	4 cut(s)	157, 304, 617, 631
HpyCH4V	TGCA	4 cut(s)	22, 55, 338, 348
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 413, 419, 422, 585
HpyF3I	CTNAG	4 cut(s)	317, 455, 621, 711
HpySE526I	ACGT	4 cut(s)	157, 304, 617, 631
Hsp92I	GRCGYC	1 cut(s)	689
Hsp92II	CATG	3 cut(s)	43, 311, 352
HspAI	GCGC	2 cut(s)	226, 279
Kpn2I	TCCGGA	1 cut(s)	257
Kzo9I	GATC	5 cut(s)	104, 138, 190, 313, 673
LmnI	GCTCC	3 cut(s)	223, 435, 584
Lsp1109I	GCAGC	5 cut(s)	76, 350, 397, 560, 615
LweI	GCATC	2 cut(s)	311, 318
MaeI	CTAG	1 cut(s)	188
MaeII	ACGT	4 cut(s)	157, 304, 617, 631
MaeIII	GTNAC	2 cut(s)	244, 613
MalI	GATC	5 cut(s)	106, 140, 192, 315, 675
MbiI	CCGCTC	3 cut(s)	425, 579, 684
MboI	GATC	5 cut(s)	104, 138, 190, 313, 673
MboII	GAAGA	4 cut(s)	246, 435, 464, 699
MflI	RGATCY	3 cut(s)	104, 190, 313
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	5 cut(s)	386, 397, 505, 526, 702
MnlI	CCTC	8 cut(s)	92, 285, 289, 367, 370, 412, 470, 476
MroI	TCCGGA	1 cut(s)	257
MroXI	GAANNNNTTC	2 cut(s)	123, 397
MslI	CAYNNNNRTG	1 cut(s)	291
MspA1I	CMGCKG	3 cut(s)	410, 539, 573
MspI	CCGG	1 cut(s)	258
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	5 cut(s)	86, 413, 419, 422, 585
NdeII	GATC	5 cut(s)	104, 138, 190, 313, 673
NlaIII	CATG	3 cut(s)	43, 311, 352
NlaIV	GGNNCC	2 cut(s)	216, 238
NmeAIII	GCCGAG	1 cut(s)	532
NmuCI	GTSAC	1 cut(s)	613
NspI	RCATGY	1 cut(s)	352
NspV	TTCGAA	1 cut(s)	362
OliI	CACNNNNGTG	1 cut(s)	291
PaeI	GCATGC	1 cut(s)	352
PdmI	GAANNNNTTC	2 cut(s)	123, 397
PfeI	GAWTC	2 cut(s)	62, 68
PkrI	GCNGC	9 cut(s)	91, 340, 409, 412, 415, 424, 575, 578, 605
Ppu21I	YACGTR	1 cut(s)	158
PpuMI	RGGWCCY	1 cut(s)	459
Psp5II	RGGWCCY	1 cut(s)	459
PspN4I	GGNNCC	2 cut(s)	216, 238
PspPI	GGNCC	3 cut(s)	459, 522, 679
PspPPI	RGGWCCY	1 cut(s)	459
PsuI	RGATCY	3 cut(s)	104, 190, 313
PvuII	CAGCTG	2 cut(s)	539, 573
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
RseI	CAYNNNNRTG	1 cut(s)	291
SatI	GCNGC	9 cut(s)	90, 339, 408, 411, 414, 423, 574, 577, 604
Sau3AI	GATC	5 cut(s)	104, 138, 190, 313, 673
Sau96I	GGNCC	3 cut(s)	459, 522, 679
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	2 cut(s)	311, 318
SfuI	TTCGAA	1 cut(s)	362
SinI	GGWCC	2 cut(s)	459, 679
SmiMI	CAYNNNNRTG	1 cut(s)	291
SphI	GCATGC	1 cut(s)	352
Sse9I	AATT	5 cut(s)	386, 397, 505, 526, 702
SsiI	CCGC	9 cut(s)	405, 408, 414, 420, 423, 577, 582, 663, 682
SspMI	CTAG	1 cut(s)	188
TaaI	ACNGT	4 cut(s)	13, 501, 593, 613
TaiI	ACGT	4 cut(s)	160, 307, 620, 634
TaqI	TCGA	4 cut(s)	362, 475, 651, 686
TasI	AATT	5 cut(s)	386, 397, 505, 526, 702
TauI	GCSGC	4 cut(s)	410, 416, 425, 579
TfiI	GAWTC	2 cut(s)	62, 68
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	5 cut(s)	89, 338, 410, 573, 603
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	4 cut(s)	116, 212, 315, 519
TspGWI	ACGGA	1 cut(s)	422
VpaK11BI	GGWCC	2 cut(s)	459, 679
XapI	RAATTY	3 cut(s)	386, 397, 702
XceI	RCATGY	1 cut(s)	352
XmnI	GAANNNNTTC	2 cut(s)	123, 397
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.