Rmu_sc0000516.1_g000036

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000516.1
OG0020064
Physical Location & Seq
Forward (+)
152780 .. 153361
582 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 582 bp
atggagacatgtccaagcatccaatatcaaggatactatgatcaaaataccatgcttggaggatttcatgacaaccaagggcattggaataattattattctcctccatacaatccggcatgggataatccgccttactcttcgtggaatgacgatccaaacatgcaacaaggatctttcaatgagtttgaagcttccccatattcataccatgaatattttccacaagcaccacctcctcaaaattcaggtatgtctaataatgatgatgagattattaaggaactaaatgctgctactcaagctttgattcagggacaacaagcttcaaatgcttcttttcaagcttggattcaggaaaagcaagctcttgatgatgatttagcagaaaaactaaagcgtttggagaacttaatatctcaggagcacccttctaaaccgatggcaactttagaggagctcccgacaactgcagatttgtgccaaccccatgatgcattccatgattcaacatttgatgaggatgtggtaagagatttggatgagtcttgcgaagagccactcaacgttgagattttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag rve

Protein Analysis

193

Amino Acids

22.09

Weight (kDa)

4.05

Isoelectric Point (pI)

51.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 131
AclI AACGTT 1 cut(s) 567
AclWI GGATC 2 cut(s) 149, 181
AcsI RAATTY 1 cut(s) 244
AflIII ACRYGT 1 cut(s) 8
AgsI TTSAA 5 cut(s) 181, 191, 330, 344, 510
AluBI AGCT 6 cut(s) 194, 305, 326, 347, 368, 460
AluI AGCT 6 cut(s) 194, 305, 326, 347, 368, 460
Alw21I GWGCWC 2 cut(s) 429, 462
AlwI GGATC 2 cut(s) 149, 181
ApeKI GCWGC 1 cut(s) 293
ApoI RAATTY 1 cut(s) 244
Asp700I GAANNNNTTC 1 cut(s) 219
BanII GRGCYC 1 cut(s) 462
Bbv12I GWGCWC 2 cut(s) 429, 462
BbvI GCAGC 1 cut(s) 280
BccI CCATC 1 cut(s) 436
BciVI GTATCC 1 cut(s) 26
BclI TGATCA 1 cut(s) 40
BfmI CTRYAG 1 cut(s) 471
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
BmsI GCATC 2 cut(s) 27, 484
BpuEI CTTGAG 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 3 cut(s) 18, 529, 547
BseMII CTCAG 1 cut(s) 434
BseRI GAGGAG 3 cut(s) 93, 228, 470
BseXI GCAGC 1 cut(s) 280
BsiHKAI GWGCWC 2 cut(s) 429, 462
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 330
BsmI GAATGC 1 cut(s) 497
Bsp1286I GDGCHC 2 cut(s) 429, 462
Bsp143I GATC 3 cut(s) 40, 154, 173
BspACI CCGC 1 cut(s) 131
BspCNI CTCAG 1 cut(s) 433
BspHI TCATGA 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 2 cut(s) 149, 181
BspQI GCTCTTC 1 cut(s) 549
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 3 cut(s) 40, 154, 173
BssT1I CCWWGG 1 cut(s) 76
Bst6I CTCTTC 2 cut(s) 145, 549
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 1 cut(s) 420
BstF5I GGATG 3 cut(s) 18, 529, 547
BstKTI GATC 3 cut(s) 43, 157, 176
BstMBI GATC 3 cut(s) 40, 154, 173
BstMWI GCNNNNNNNGC 2 cut(s) 302, 332
BstNSI RCATGY 2 cut(s) 12, 166
BstSFI CTRYAG 1 cut(s) 471
BstV1I GCAGC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BsuI GTATCC 1 cut(s) 26
BtsCI GGATG 3 cut(s) 18, 529, 547
Cac8I GCNNGC 1 cut(s) 366
CciI TCATGA 1 cut(s) 67
CviAII CATG 8 cut(s) 9, 52, 68, 120, 163, 212, 491, 503
CviJI RGCY 7 cut(s) 194, 305, 326, 347, 368, 460, 559
CviKI_1 RGCY 7 cut(s) 194, 305, 326, 347, 368, 460, 559
DdeI CTNAG 1 cut(s) 420
DpnI GATC 3 cut(s) 42, 156, 175
DpnII GATC 3 cut(s) 40, 154, 173
Eam1104I CTCTTC 2 cut(s) 145, 549
EarI CTCTTC 2 cut(s) 145, 549
EciI GGCGGA 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 462
Eco53kI GAGCTC 1 cut(s) 460
EcoICRI GAGCTC 1 cut(s) 460
EcoT14I CCWWGG 1 cut(s) 76
EcoT22I ATGCAT 1 cut(s) 499
EcoT38I GRGCYC 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 8 cut(s) 12, 55, 71, 123, 166, 215, 494, 506
FaqI GGGAC 1 cut(s) 330
FatI CATG 8 cut(s) 8, 51, 67, 119, 162, 211, 490, 502
FbaI TGATCA 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 3 cut(s) 5, 536, 554
FriOI GRGCYC 1 cut(s) 462
Fsp4HI GCNGC 1 cut(s) 294
GluI GCNGC 1 cut(s) 294
HapII CCGG 1 cut(s) 116
Hin1II CATG 8 cut(s) 12, 55, 71, 123, 166, 215, 494, 506
HindIII AAGCTT 4 cut(s) 192, 303, 324, 345
HinfI GANTC 4 cut(s) 310, 352, 506, 545
HpaII CCGG 1 cut(s) 116
Hpy188III TCNNGA 5 cut(s) 68, 356, 371, 422, 463
HpyAV CCTTC 1 cut(s) 441
HpyCH4IV ACGT 1 cut(s) 567
HpyCH4V TGCA 3 cut(s) 166, 473, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 332
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 1 cut(s) 567
Hsp92II CATG 8 cut(s) 12, 55, 71, 123, 166, 215, 494, 506
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 3 cut(s) 40, 154, 173
LguI GCTCTTC 1 cut(s) 549
LmnI GCTCC 3 cut(s) 424, 457, 465
LpnPI CCDG 5 cut(s) 129, 234, 299, 341, 407
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 2 cut(s) 27, 484
MaeII ACGT 1 cut(s) 567
MalI GATC 3 cut(s) 42, 156, 175
MboI GATC 3 cut(s) 40, 154, 173
MboII GAAGA 2 cut(s) 132, 566
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 2 cut(s) 429, 462
MluCI AATT 2 cut(s) 91, 244
MlyI GAGTC 1 cut(s) 554
MnlI CCTC 6 cut(s) 53, 114, 246, 249, 448, 514
Mph1103I ATGCAT 1 cut(s) 499
MroXI GAANNNNTTC 1 cut(s) 219
MseI TTAA 2 cut(s) 279, 413
MspI CCGG 1 cut(s) 116
Mva1269I GAATGC 1 cut(s) 497
MwoI GCNNNNNNNGC 2 cut(s) 302, 332
NdeII GATC 3 cut(s) 40, 154, 173
NlaIII CATG 8 cut(s) 12, 55, 71, 123, 166, 215, 494, 506
NsiI ATGCAT 1 cut(s) 499
NspI RCATGY 2 cut(s) 12, 166
PagI TCATGA 1 cut(s) 67
PciI ACATGT 1 cut(s) 8
PciSI GCTCTTC 1 cut(s) 549
PctI GAATGC 1 cut(s) 497
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 3 cut(s) 310, 352, 506
PkrI GCNGC 1 cut(s) 295
PleI GAGTC 1 cut(s) 553
PpsI GAGTC 1 cut(s) 553
PscI ACATGT 1 cut(s) 8
Psp124BI GAGCTC 1 cut(s) 462
Psp1406I AACGTT 1 cut(s) 567
PstI CTGCAG 1 cut(s) 475
PsuI RGATCY 1 cut(s) 173
SacI GAGCTC 1 cut(s) 462
SapI GCTCTTC 1 cut(s) 549
SaqAI TTAA 2 cut(s) 279, 413
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 3 cut(s) 40, 154, 173
SchI GAGTC 1 cut(s) 554
SduI GDGCHC 2 cut(s) 429, 462
SetI ASST 9 cut(s) 196, 238, 253, 307, 328, 349, 370, 462, 570
SfaNI GCATC 2 cut(s) 27, 484
SfcI CTRYAG 1 cut(s) 471
SmlI CTYRAG 1 cut(s) 300
SmoI CTYRAG 1 cut(s) 300
Sse9I AATT 2 cut(s) 91, 244
SsiI CCGC 1 cut(s) 131
SspI AATATT 1 cut(s) 218
SstI GAGCTC 1 cut(s) 462
StyI CCWWGG 1 cut(s) 76
TaiI ACGT 1 cut(s) 570
TasI AATT 2 cut(s) 91, 244
TfiI GAWTC 3 cut(s) 310, 352, 506
Tru1I TTAA 2 cut(s) 279, 413
Tru9I TTAA 2 cut(s) 279, 413
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 3 cut(s) 56, 195, 228
XapI RAATTY 1 cut(s) 244
XceI RCATGY 2 cut(s) 12, 166
XmnI GAANNNNTTC 1 cut(s) 219
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.