Rmu_sc0017365.1_g000002

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017365.1
OG0020064
Physical Location & Seq
Reverse (-)
4668 .. 5132
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017365.1_g000002.1.cds

Sequence Viewer

Length: 465 bp
atggagacctgtccaagcatccaatatcaaggatactataatcaaaataccatgcttggaggatttcatgacaaccaagggcattggaataatttttattcacctccatacaatcctgcatgggataatcctccttactcttcgtggaatgacgatccaaacttgcaacaaggatctttcaatgagttcgaagcttctccatattcataccatgactattggccacaagcactacttcctcaaaactcaggtatgtctaataattatgatgagattattaaggaactaaatgctgctactcaagctttgattcagggacaacaagcttcagatgcttcttttcaagcttggattcaggaaaagcaagctcttgatgatgatttggcagaaaaactaaagcgtttggagaacttaatatctcaggagcacccttccaaacagatggcaactttaggggagctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag rve

Protein Analysis

154

Amino Acids

17.69

Weight (kDa)

4.26

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 149, 181
AcoI YGGCCR 1 cut(s) 221
AcuI CTGAAG 1 cut(s) 312
AgsI TTSAA 2 cut(s) 181, 344
AluBI AGCT 6 cut(s) 194, 305, 326, 347, 368, 460
AluI AGCT 6 cut(s) 194, 305, 326, 347, 368, 460
Alw21I GWGCWC 2 cut(s) 429, 462
AlwI GGATC 2 cut(s) 149, 181
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 93
AsuII TTCGAA 1 cut(s) 189
BalI TGGCCA 1 cut(s) 223
BanII GRGCYC 1 cut(s) 462
Bbv12I GWGCWC 2 cut(s) 429, 462
BbvI GCAGC 1 cut(s) 280
BccI CCATC 1 cut(s) 436
BciVI GTATCC 1 cut(s) 26
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
BmsI GCATC 2 cut(s) 27, 322
Bpu14I TTCGAA 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 18
BseMII CTCAG 2 cut(s) 261, 434
BseXI GCAGC 1 cut(s) 280
BshFI GGCC 1 cut(s) 223
BsiHKAI GWGCWC 2 cut(s) 429, 462
BslFI GGGAC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 1 cut(s) 223
Bsp119I TTCGAA 1 cut(s) 189
Bsp1286I GDGCHC 2 cut(s) 429, 462
Bsp143I GATC 2 cut(s) 154, 173
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 2 cut(s) 260, 433
BspHI TCATGA 1 cut(s) 67
BspPI GGATC 2 cut(s) 149, 181
BspT104I TTCGAA 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 2 cut(s) 154, 173
BssT1I CCWWGG 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 145
BstBI TTCGAA 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 2 cut(s) 247, 420
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 2 cut(s) 157, 176
BstMBI GATC 2 cut(s) 154, 173
BstMWI GCNNNNNNNGC 2 cut(s) 302, 332
BstV1I GCAGC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 173
BstXI CCANNNNNNTGG 1 cut(s) 442
BstYI RGATCY 1 cut(s) 173
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 223
BtsCI GGATG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 366
CciI TCATGA 1 cut(s) 67
CviAII CATG 4 cut(s) 52, 68, 120, 212
CviJI RGCY 7 cut(s) 194, 223, 305, 326, 347, 368, 460
CviKI_1 RGCY 7 cut(s) 194, 223, 305, 326, 347, 368, 460
DdeI CTNAG 2 cut(s) 247, 420
DpnI GATC 2 cut(s) 156, 175
DpnII GATC 2 cut(s) 154, 173
EaeI YGGCCR 1 cut(s) 221
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
Ecl136II GAGCTC 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 462
Eco53kI GAGCTC 1 cut(s) 460
Eco57I CTGAAG 1 cut(s) 312
EcoICRI GAGCTC 1 cut(s) 460
EcoT14I CCWWGG 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 4 cut(s) 55, 71, 123, 215
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FaqI GGGAC 1 cut(s) 330
FatI CATG 4 cut(s) 51, 67, 119, 211
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 1 cut(s) 5
FriOI GRGCYC 1 cut(s) 462
Fsp4HI GCNGC 1 cut(s) 294
GluI GCNGC 1 cut(s) 294
HaeIII GGCC 1 cut(s) 223
Hin1II CATG 4 cut(s) 55, 71, 123, 215
HindIII AAGCTT 4 cut(s) 192, 303, 324, 345
HinfI GANTC 2 cut(s) 310, 352
HphI GGTGA 1 cut(s) 93
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 4 cut(s) 68, 356, 371, 422
HpyAV CCTTC 1 cut(s) 441
HpyCH4V TGCA 2 cut(s) 119, 166
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 332
HpyF3I CTNAG 2 cut(s) 247, 420
Hsp92II CATG 4 cut(s) 55, 71, 123, 215
Kzo9I GATC 2 cut(s) 154, 173
LmnI GCTCC 2 cut(s) 424, 457
LpnPI CCDG 6 cut(s) 22, 129, 234, 299, 341, 407
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 2 cut(s) 27, 322
MalI GATC 2 cut(s) 156, 175
MboI GATC 2 cut(s) 154, 173
MboII GAAGA 1 cut(s) 132
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 2 cut(s) 429, 462
MlsI TGGCCA 1 cut(s) 223
MluCI AATT 2 cut(s) 91, 262
MluNI TGGCCA 1 cut(s) 223
MnlI CCTC 4 cut(s) 53, 114, 141, 249
Mox20I TGGCCA 1 cut(s) 223
MscI TGGCCA 1 cut(s) 223
MseI TTAA 2 cut(s) 279, 413
Msp20I TGGCCA 1 cut(s) 223
MwoI GCNNNNNNNGC 2 cut(s) 302, 332
NdeII GATC 2 cut(s) 154, 173
NlaIII CATG 4 cut(s) 55, 71, 123, 215
NspV TTCGAA 1 cut(s) 189
PagI TCATGA 1 cut(s) 67
PfeI GAWTC 2 cut(s) 310, 352
PkrI GCNGC 1 cut(s) 295
Psp124BI GAGCTC 1 cut(s) 462
PsuI RGATCY 1 cut(s) 173
SacI GAGCTC 1 cut(s) 462
SaqAI TTAA 2 cut(s) 279, 413
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 2 cut(s) 154, 173
SduI GDGCHC 2 cut(s) 429, 462
SetI ASST 9 cut(s) 11, 106, 196, 253, 307, 328, 349, 370, 462
SfaNI GCATC 2 cut(s) 27, 322
SfuI TTCGAA 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 300
SmoI CTYRAG 1 cut(s) 300
Sse9I AATT 2 cut(s) 91, 262
SstI GAGCTC 1 cut(s) 462
StyI CCWWGG 1 cut(s) 76
TaqI TCGA 1 cut(s) 189
TasI AATT 2 cut(s) 91, 262
TfiI GAWTC 2 cut(s) 310, 352
Tru1I TTAA 2 cut(s) 279, 413
Tru9I TTAA 2 cut(s) 279, 413
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 2 cut(s) 56, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.