Rroxscaffold_1G00019030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0020064
Physical Location & Seq
Forward (+)
23147833 .. 23152130
4298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00019030.1

Sequence Viewer

Length: 420 bp
ATGCCGGGATGCGTGGTGGAGTGGGTTGCGTGTTCGCAGCGTCGTCTCCTCCGACTCCTACTCCGAATGATCGGCGACGGATACTGTGATCAAAATACCATGCTTGGAGGATTTCAAGACAACCAAAGGCATTGGAATAATTACTATTCTCCTCTATACAATCCAGCACGGGAAAATCCTCCGTACTCTTTGTGGAATGAAGATCCAAACGTGCAACAAGGATCTTTCAATGAGTTCGAAGATTCTCCATATTCATACCATGACTATTGGTCACAAGCCCCACCTCCTCAAAACTCAGGTATGTCTAATAATGATGATGAGATTATTAAGGAACTAAATGCTGCTACTCAAGCTTTGATTCAGGGACAACAAGCTTCGATGCTTCTTTTCAAGCTTGGATTCAGAAAAGAAAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

16.05

Weight (kDa)

4.74

Isoelectric Point (pI)

56.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 197, 229
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 3 cut(s) 116, 229, 391
AhdI GACNNNNNGTC 1 cut(s) 268
AluBI AGCT 4 cut(s) 353, 374, 394, 414
AluI AGCT 4 cut(s) 353, 374, 394, 414
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 2 cut(s) 197, 229
ApeKI GCWGC 2 cut(s) 37, 341
AsuC2I CCSGG 1 cut(s) 6
AsuII TTCGAA 1 cut(s) 237
BbvI GCAGC 2 cut(s) 49, 328
BciVI GTATCC 1 cut(s) 74
BclI TGATCA 1 cut(s) 88
BcnI CCSGG 1 cut(s) 6
BcoDI GTCTC 1 cut(s) 50
BfuI GTATCC 1 cut(s) 74
BisI GCNGC 2 cut(s) 38, 342
BlsI GCNGC 2 cut(s) 39, 343
Bme1390I CCNGG 1 cut(s) 6
BmeRI GACNNNNNGTC 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 6
BmsI GCATC 1 cut(s) 369
Bpu14I TTCGAA 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 333
BpuMI CCSGG 1 cut(s) 6
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
BseGI GGATG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 309
BseRI GAGGAG 3 cut(s) 38, 141, 276
BseXI GCAGC 2 cut(s) 49, 328
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 378
BsmAI GTCTC 1 cut(s) 50
BsmBI CGTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 378
Bsp119I TTCGAA 1 cut(s) 237
Bsp143I GATC 4 cut(s) 69, 88, 202, 221
BspCNI CTCAG 1 cut(s) 308
BspPI GGATC 2 cut(s) 197, 229
BspT104I TTCGAA 1 cut(s) 237
BssMI GATC 4 cut(s) 69, 88, 202, 221
Bst4CI ACNGT 1 cut(s) 86
BstBI TTCGAA 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 295
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 4 cut(s) 72, 91, 205, 224
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 4 cut(s) 69, 88, 202, 221
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 4
BstV1I GCAGC 2 cut(s) 49, 328
BstX2I RGATCY 2 cut(s) 202, 221
BstYI RGATCY 2 cut(s) 202, 221
BsuI GTATCC 1 cut(s) 74
BtsCI GGATG 1 cut(s) 14
CseI GACGC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 184
CviAII CATG 2 cut(s) 100, 260
CviJI RGCY 5 cut(s) 278, 353, 374, 394, 414
CviKI_1 RGCY 5 cut(s) 278, 353, 374, 394, 414
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 295
DpnI GATC 4 cut(s) 71, 90, 204, 223
DpnII GATC 4 cut(s) 69, 88, 202, 221
DriI GACNNNNNGTC 1 cut(s) 268
Eam1105I GACNNNNNGTC 1 cut(s) 268
Esp3I CGTCTC 1 cut(s) 50
FaeI CATG 2 cut(s) 103, 263
FaiI YATR 6 cut(s) 101, 157, 250, 256, 261, 302
FaqI GGGAC 1 cut(s) 378
FatI CATG 2 cut(s) 99, 259
FbaI TGATCA 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 38, 342
FokI GGATG 1 cut(s) 21
Fsp4HI GCNGC 2 cut(s) 38, 342
GluI GCNGC 2 cut(s) 38, 342
HapII CCGG 1 cut(s) 5
HgaI GACGC 1 cut(s) 29
Hin1II CATG 2 cut(s) 103, 263
HindIII AAGCTT 3 cut(s) 351, 372, 392
HinfI GANTC 4 cut(s) 54, 242, 358, 399
HpaII CCGG 1 cut(s) 5
Hpy188I TCNGA 3 cut(s) 53, 65, 404
Hpy188III TCNNGA 2 cut(s) 116, 417
Hpy99I CGWCG 2 cut(s) 45, 80
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 1 cut(s) 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 1 cut(s) 295
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 2 cut(s) 103, 263
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 4 cut(s) 69, 88, 202, 221
LpnPI CCDG 4 cut(s) 18, 177, 282, 347
Lsp1109I GCAGC 2 cut(s) 49, 328
LweI GCATC 1 cut(s) 369
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 270
MalI GATC 4 cut(s) 71, 90, 204, 223
MboI GATC 4 cut(s) 69, 88, 202, 221
MboII GAAGA 2 cut(s) 212, 251
MflI RGATCY 2 cut(s) 202, 221
MluCI AATT 1 cut(s) 139
MlyI GAGTC 1 cut(s) 48
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 6 cut(s) 59, 101, 162, 189, 294, 297
MseI TTAA 1 cut(s) 327
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 350
NciI CCSGG 1 cut(s) 6
NdeII GATC 4 cut(s) 69, 88, 202, 221
NlaIII CATG 2 cut(s) 103, 263
NmuCI GTSAC 1 cut(s) 270
NspV TTCGAA 1 cut(s) 237
PcsI WCGNNNNNNNCGW 1 cut(s) 49
PfeI GAWTC 3 cut(s) 242, 358, 399
PkrI GCNGC 2 cut(s) 39, 343
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
PsuI RGATCY 2 cut(s) 202, 221
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 2 cut(s) 38, 342
Sau3AI GATC 4 cut(s) 69, 88, 202, 221
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 1 cut(s) 6
SetI ASST 7 cut(s) 213, 286, 301, 355, 376, 396, 416
SfaNI GCATC 1 cut(s) 369
SfuI TTCGAA 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
Sse9I AATT 1 cut(s) 139
StyD4I CCNGG 1 cut(s) 4
TaaI ACNGT 1 cut(s) 86
TaiI ACGT 1 cut(s) 213
TaqI TCGA 2 cut(s) 237, 377
TasI AATT 1 cut(s) 139
TfiI GAWTC 3 cut(s) 242, 358, 399
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 2 cut(s) 37, 341
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 2 cut(s) 213, 243
TspGWI ACGGA 2 cut(s) 93, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.