Rmu_sc0000573.1_g000004

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000573.1
OG0021634
Physical Location & Seq
Forward (+)
9219 .. 10801
1583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000573.1_g000004.1.cds

Sequence Viewer

Length: 798 bp
atggggttgggcttcgaggggcggctgactcctcctccttcgctgccttcccagaattttctctgggcaccagatcggatctaccgggatgaaattgctatgggaacttcgttgacagtggtcaggtgggtggataaagatggtcgacgatggcagagcggcgatcggagaggtcgatggtgcggattggttgggcgtcgggtcgggtcgtcgagcaaaggctttggatttgcaccagataagaggccagaagatccccatgccaatgcaaacttccaaaggctcaagtcatcatatgaaatactcaaggatcgaaatgcccgaaaactgtttgatgcaagtcgaagagccaagagggaagaactgcatcatcagaatcgcctgcatgagcaacacaacaatgccaccaagcaaggaaggatgttttccggtgatggcagacattgtcatgcaaagctagcttctgatctccaagcgagggcgagagaacggagatgggctcccacatggagagaagcacgaggaagacgagctgctgtcaatggtcctagagaagagttgtttggtattggtgatttggaaggaatactaaagagagtgcagcagcagcagtatcacggccagtggcaatgcgatgcaaagccagagaggtgttctttcgagccagagagatattcttcgatctcaaagaaagagaatgaggagatgctaagaggagaatatcgtctcaagctgcttctgattatgttgttcttctttgctttatggtctatggtaaatatatatggtgtctattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

265

Amino Acids

30.94

Weight (kDa)

10.11

Isoelectric Point (pI)

56.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021634)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000573.1_g000004 Rmu_sc0030155.1_g000001
rosa_roxburghii Rroxscaffold_1G00007110
rosa_rugosa Rorug05G0431500
rosa_samantha Rh5DG522400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 67
AccBSI CCGCTC 1 cut(s) 159
AccI GTMKAC 1 cut(s) 145
AciI CCGC 3 cut(s) 22, 159, 183
AclWI GGATC 3 cut(s) 86, 248, 318
AcoI YGGCCR 1 cut(s) 619
AcsI RAATTY 1 cut(s) 55
AcyI GRCGYC 1 cut(s) 196
AfiI CCNNNNNNNGG 1 cut(s) 478
AjuI GAANNNNNNNTTGG 4 cut(s) 257, 289, 546, 578
AluBI AGCT 4 cut(s) 457, 461, 533, 733
AluI AGCT 4 cut(s) 457, 461, 533, 733
Alw26I GTCTC 1 cut(s) 731
AlwI GGATC 3 cut(s) 86, 248, 318
AoxI GGCC 2 cut(s) 245, 619
ApeKI GCWGC 6 cut(s) 43, 533, 601, 604, 607, 733
ApoI RAATTY 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 545
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 443, 584
AsuNHI GCTAGC 1 cut(s) 457
AvaII GGWCC 1 cut(s) 545
BaeGI GKGCMC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 67
BanII GRGCYC 1 cut(s) 502
BauI CACGAG 1 cut(s) 519
BbsI GAAGAC 1 cut(s) 532
BbvI GCAGC 6 cut(s) 30, 520, 613, 616, 619, 720
BccI CCATC 5 cut(s) 134, 144, 171, 428, 489
BceAI ACGGC 1 cut(s) 634
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 731
BfaI CTAG 2 cut(s) 458, 549
BisI GCNGC 8 cut(s) 23, 44, 160, 534, 602, 605, 608, 734
BlsI GCNGC 8 cut(s) 24, 45, 161, 535, 603, 606, 609, 735
Bme1390I CCNGG 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 545
BmgT120I GGNCC 1 cut(s) 545
BmiI GGNNCC 2 cut(s) 69, 501
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 4 cut(s) 325, 376, 625, 696
BmtI GCTAGC 1 cut(s) 461
BoxI GACNNNNGTC 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 532
BplI GAGNNNNNCTC 2 cut(s) 484, 516
BpuEI CTTGAG 3 cut(s) 269, 290, 713
BpuMI CCSGG 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 196
BsaWI WCCGGW 1 cut(s) 428
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse1I ACTGG 1 cut(s) 622
Bse3DI GCAATG 1 cut(s) 635
BseGI GGATG 2 cut(s) 94, 426
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMI GCAATG 1 cut(s) 635
BseNI ACTGG 1 cut(s) 622
BseRI GAGGAG 4 cut(s) 21, 24, 716, 729
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 6 cut(s) 30, 520, 613, 616, 619, 720
BsgI GTGCAG 1 cut(s) 620
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 2 cut(s) 247, 621
BshNI GGYRCC 1 cut(s) 67
BsiEI CGRYCG 1 cut(s) 166
BsiSI CCGG 2 cut(s) 85, 429
BslI CCNNNNNNNGG 1 cut(s) 478
BsmAI GTCTC 1 cut(s) 731
BsmBI CGTCTC 1 cut(s) 731
BsnI GGCC 2 cut(s) 247, 621
Bsp1286I GDGCHC 2 cut(s) 70, 502
Bsp143I GATC 7 cut(s) 73, 78, 163, 253, 310, 466, 681
BspACI CCGC 3 cut(s) 22, 159, 183
BspANI GGCC 2 cut(s) 247, 621
BspLI GGNNCC 2 cut(s) 69, 501
BspOI GCTAGC 1 cut(s) 461
BspPI GGATC 3 cut(s) 86, 248, 318
BspQI GCTCTTC 1 cut(s) 340
BspT107I GGYRCC 1 cut(s) 67
BsrBI CCGCTC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 635
BsrI ACTGG 1 cut(s) 622
BssMI GATC 7 cut(s) 73, 78, 163, 253, 310, 466, 681
BssNI GRCGYC 1 cut(s) 196
BssSI CACGAG 1 cut(s) 519
Bst2BI CACGAG 1 cut(s) 519
Bst4CI ACNGT 2 cut(s) 118, 330
Bst6I CTCTTC 2 cut(s) 340, 549
BstACI GRCGYC 1 cut(s) 196
BstC8I GCNNGC 2 cut(s) 383, 459
BstDEI CTNAG 1 cut(s) 710
BstF5I GGATG 2 cut(s) 94, 426
BstKTI GATC 7 cut(s) 76, 81, 166, 256, 313, 469, 684
BstMAI GTCTC 1 cut(s) 731
BstMBI GATC 7 cut(s) 73, 78, 163, 253, 310, 466, 681
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 2 cut(s) 458, 607
BstPAI GACNNNNGTC 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 70
BstV1I GCAGC 6 cut(s) 30, 520, 613, 616, 619, 720
BstV2I GAAGAC 1 cut(s) 532
BstX2I RGATCY 2 cut(s) 78, 253
BstYI RGATCY 2 cut(s) 78, 253
BsuRI GGCC 2 cut(s) 247, 621
BtgZI GCGATG 1 cut(s) 648
BtsCI GGATG 2 cut(s) 94, 426
BtsIMutI CAGTG 2 cut(s) 123, 629
Cac8I GCNNGC 2 cut(s) 383, 459
Cfr13I GGNCC 1 cut(s) 545
CseI GACGC 1 cut(s) 185
CviAII CATG 4 cut(s) 260, 386, 449, 507
DdeI CTNAG 1 cut(s) 710
DpnI GATC 7 cut(s) 75, 80, 165, 255, 312, 468, 683
DpnII GATC 7 cut(s) 73, 78, 163, 253, 310, 466, 681
EaeI YGGCCR 1 cut(s) 619
Eam1104I CTCTTC 2 cut(s) 340, 549
EarI CTCTTC 2 cut(s) 340, 549
Eco24I GRGCYC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 545
EcoT38I GRGCYC 1 cut(s) 502
Esp3I CGTCTC 1 cut(s) 731
FaeI CATG 4 cut(s) 263, 389, 452, 510
FatI CATG 4 cut(s) 259, 385, 448, 506
FauNDI CATATG 1 cut(s) 295
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 8 cut(s) 23, 44, 160, 534, 602, 605, 608, 734
FokI GGATG 2 cut(s) 101, 433
FriOI GRGCYC 1 cut(s) 502
Fsp4HI GCNGC 8 cut(s) 23, 44, 160, 534, 602, 605, 608, 734
FspBI CTAG 2 cut(s) 458, 549
GluI GCNGC 8 cut(s) 23, 44, 160, 534, 602, 605, 608, 734
HaeIII GGCC 2 cut(s) 247, 621
HapII CCGG 2 cut(s) 85, 429
HgaI GACGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 196
Hin1II CATG 4 cut(s) 263, 389, 452, 510
HincII GTYRAC 2 cut(s) 114, 146
HindII GTYRAC 2 cut(s) 114, 146
HinfI GANTC 2 cut(s) 28, 376
HpaII CCGG 2 cut(s) 85, 429
HphI GGTGA 2 cut(s) 443, 584
Hpy166II GTNNAC 2 cut(s) 114, 146
Hpy188I TCNGA 5 cut(s) 78, 168, 375, 466, 741
Hpy8I GTNNAC 2 cut(s) 114, 146
Hpy99I CGWCG 3 cut(s) 150, 201, 214
HpyAV CCTTC 4 cut(s) 48, 57, 411, 575
HpyCH4III ACNGT 2 cut(s) 118, 330
HpyCH4V TGCA 8 cut(s) 233, 269, 338, 367, 385, 452, 601, 638
HpyF10VI GCNNNNNNNGC 2 cut(s) 458, 607
HpyF3I CTNAG 1 cut(s) 710
Hsp92I GRCGYC 1 cut(s) 196
Hsp92II CATG 4 cut(s) 263, 389, 452, 510
Kzo9I GATC 7 cut(s) 73, 78, 163, 253, 310, 466, 681
LguI GCTCTTC 1 cut(s) 340
LmnI GCTCC 1 cut(s) 505
Lsp1109I GCAGC 6 cut(s) 30, 520, 613, 616, 619, 720
LweI GCATC 4 cut(s) 325, 376, 625, 696
MaeI CTAG 2 cut(s) 458, 549
MalI GATC 7 cut(s) 75, 80, 165, 255, 312, 468, 683
MbiI CCGCTC 1 cut(s) 159
MboI GATC 7 cut(s) 73, 78, 163, 253, 310, 466, 681
MboII GAAGA 7 cut(s) 263, 357, 371, 537, 566, 669, 745
MflI RGATCY 2 cut(s) 78, 253
MhlI GDGCHC 2 cut(s) 70, 502
MluCI AATT 2 cut(s) 55, 93
MlyI GAGTC 1 cut(s) 22
MslI CAYNNNNRTG 3 cut(s) 264, 399, 447
MspI CCGG 2 cut(s) 85, 429
MspR9I CCNGG 1 cut(s) 86
MwoI GCNNNNNNNGC 2 cut(s) 458, 607
NciI CCSGG 1 cut(s) 86
NdeI CATATG 1 cut(s) 295
NdeII GATC 7 cut(s) 73, 78, 163, 253, 310, 466, 681
NheI GCTAGC 1 cut(s) 457
NlaIII CATG 4 cut(s) 263, 389, 452, 510
NlaIV GGNNCC 2 cut(s) 69, 501
PciSI GCTCTTC 1 cut(s) 340
PcsI WCGNNNNNNNCGW 3 cut(s) 172, 319, 526
PfeI GAWTC 1 cut(s) 376
PflFI GACNNNGTC 1 cut(s) 444
PkrI GCNGC 8 cut(s) 24, 45, 161, 535, 603, 606, 609, 735
Ple19I CGATCG 1 cut(s) 166
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PshAI GACNNNNGTC 1 cut(s) 119
PspN4I GGNNCC 2 cut(s) 69, 501
PspPI GGNCC 1 cut(s) 545
PsuI RGATCY 2 cut(s) 78, 253
PsyI GACNNNGTC 1 cut(s) 444
PvuI CGATCG 1 cut(s) 166
RseI CAYNNNNRTG 3 cut(s) 264, 399, 447
SalI GTCGAC 1 cut(s) 144
SapI GCTCTTC 1 cut(s) 340
SatI GCNGC 8 cut(s) 23, 44, 160, 534, 602, 605, 608, 734
Sau3AI GATC 7 cut(s) 73, 78, 163, 253, 310, 466, 681
Sau96I GGNCC 1 cut(s) 545
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 2 cut(s) 70, 502
SetI ASST 7 cut(s) 128, 175, 459, 463, 535, 653, 735
SfaNI GCATC 4 cut(s) 325, 376, 625, 696
SinI GGWCC 1 cut(s) 545
SmiMI CAYNNNNRTG 3 cut(s) 264, 399, 447
SmlI CTYRAG 3 cut(s) 284, 305, 728
SmoI CTYRAG 3 cut(s) 284, 305, 728
Sse9I AATT 2 cut(s) 55, 93
SsiI CCGC 3 cut(s) 22, 159, 183
SspMI CTAG 2 cut(s) 458, 549
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 2 cut(s) 118, 330
TaqI TCGA 8 cut(s) 15, 145, 175, 212, 313, 343, 660, 680
TasI AATT 2 cut(s) 55, 93
TauI GCSGC 2 cut(s) 25, 162
TfiI GAWTC 1 cut(s) 376
TscAI CASTG 2 cut(s) 123, 629
TseI GCWGC 6 cut(s) 43, 533, 601, 604, 607, 733
TspDTI ATGAA 2 cut(s) 105, 312
TspGWI ACGGA 1 cut(s) 505
TspRI CASTG 2 cut(s) 123, 629
Tth111I GACNNNGTC 1 cut(s) 444
VpaK11BI GGWCC 1 cut(s) 545
XapI RAATTY 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 145
XspI CTAG 2 cut(s) 458, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.