Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009641

Physical Location & Seq

Genomic Coordinates Reverse (-)

59969456 .. 59974137

Gene Structure 4682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0431500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2037 bp

ATGGCCACCCCTGCGTACCAAGACGATCTCCACACCGTTCTCTCCGAGCAACGCCGAGAGCTCATGGCCGCCAAAACCCTAGACTCCGACCTCGACATCGCCTTCAGTCTCCAAATGCAGGAGGCCATGACCGCCTCCCTCTCTCAACAGCCCTCGTCTTCGCGCCCTCCTCCGCCTCCGCCTCCGCCGCCGCCCATCCACGACGAACACGACGACGTATTGGACCTCGCCGTCGCGCTCATGCTCGAGGACGTCCAGAAATTCGCGCAGGAATACGACGACCACGAGCGGTCCCTCTTCGAAATAAGGAAGGCGAAGGAAGACCTCGACCGCCGGATTCACGATCAGAATTTCGCCGACGAGGTCCGCAACGTCCCGGAGGACTATTGGAGCAAGTACGGCGATTACTACGAGAAGCCGTACTCTGGCGACGGCGCGTCGTCGTCGTCGTCGAAACCGGCGGTGGAGACTGAGTGTTTGAGGTTGTATTGCAAGGGTTTGGTTGGCGAAGAGGTGGTTAGGGATTCGAAGGTGGTGGTGGCTGGGGCTGGGGTTGCGATTTGTGACCCTAGAGATAATCTGATATTCGAGGCGAGGAAGAATCTGGAGGCGTTTGATGGTGGTGTGGTGATGAGCAATGAGGCTGTGGAGCTTGAGGCTCTCATTGAAGGGCTCAATACAGCTCTCACTCTGGACTTGAAAAATGTCACGTTTTTCTGTGATGGCTACATGCTTTACCAATATGTTACAGGCAGAGTGCTTCCTGGGAACAGCAAGATTGCAACATTAGTCAATCAATTAGGAGTTCTACGAAGAAAATTTGAATATTGCAGCCCTTCTTTTGTGGCACGTAGTGACATTAAGTTTGCATTTCAATTTGCAAGAGAAGCTATAGTTTCTCAAATAACCTGGCCTGCAGAAACTAGCAGTGGCAAATCTTTGAAGGAGACTTGTGTAATTTGTTTTGAGGACACTGATGTTGGTCGAATGTTTTCAATTGATGGTTGTCTGCACAGGTATTGCTTTTCTTGTATGAAACAGCATGTAGAAGTTAAGTTGCTTAATGGGCAGGTGGCACAGTGCCCTCACGAAGGCTGTAATTCTGAGGTCAATATTGACAGTTGCGTACAATTCCTGGCACCTCAACTAGTTGAGGTTATGAGCCAAAGAATCAAGGAATCTTCTATTCCTGTCACAGAAAAAGTTTATTGCCCAAAACCCAGGTGTTCTGCATTAATGTCCAAAAAGGAGGTCTTGCAATATACAAGCAGCTTTTATGCGGGTGCTGAACAATCTGGAGCCAGGAGATGCATGAAATGTCATTCCTATTTTTGTATCAATTGCAAGGTCCCATGGCATTCGGACATGACATGCTATGATTACAAAAGATCGCATCCCTATCCCCTTGCAGAAGACCAGTTGCTGAAGTCGTTGGCTACAATGAAACACTGGCGCCAGTGTGTTAAGTGCAAGAATATGGTTGAACTCGCAGAAGGTTGTTACCACATTACTTGCAGATGTGGATATGAGTTCTGCTATACTTGCGGAGCTGAATGGAAGGACAAGAAACCAACATGTTCCTGCCCAATCTGGGATGTGCGCAACATCATACGCGAACAGCCACGACAAGTCCGGCCCATTATACGTGAGCAACCACGCCAAGTTCCCCAACAACTGCGGCAGCCCATTATGCCACCGCAGGTGCAGCCTATCAGACTTGAACACCAACGACAAGGCCAGCCCATTAGACATGAACAACCACAAAGGTTTCGAGTGCAGCAGCCCATTATGCCACAACAAGTACAGCATGTCATACATGAACAGCCACGACAAGGACAGCGTGGACGTGAGCCACCTCAACAACTGCAGCCCAATATATATCAGCAGCACCGACGTGGACAGCCTGTTGTACATGAACAGCCACGACAGGCACAGCCCATTAGACGTGAACAGCCACGACGGGCACAGCCCATTAGACGTGAACAGCCACGACAGGTACGGCAACAACAGGATTATGACTACTATGAACAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

678

Amino Acids

78.11

Weight (kDa)

6.83

Isoelectric Point (pI)

61.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	180 - 297	4.1e-19	Reverse transcriptase-like
IBR	PF01485	400 - 458	2e-10	IBR domain, a half RING-finger domain
IBR	PF01485	473 - 526	5.4e-08	IBR domain, a half RING-finger domain
IBR_1	PF22191	485 - 522	3.7e-06	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05490 FvH4_2g27890 FvH4_4g21292
rosa_chinensis	RchiOBHm_Chr4g0426991 RchiOBHm_Chr5g0074421
rosa_laevigata	RLG00000007268 RLG00000036474
rosa_multiflora	Rmu_sc0000573.1_g000005 Rmu_sc0000953.1_g000017
rosa_roxburghii	Rroxscaffold_1G00007120 Rroxscaffold_5G00368880
rosa_rugosa	Rorug04G0215400 Rorug05G0431500
rosa_samantha	Rh4AG271000 Rh4BG277200 Rh4CG291900 Rh4DG274400 Rh5AG488800 Rh5BG509500 Rh5CG533300
rosa_wichuraiana	Rw4G023520 Rw5G045320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1060, 1690
AasI	GACNNNNNNGTC	1 cut(s)	230
AatII	GACGTC	1 cut(s)	255
Acc16I	TGCGCA	1 cut(s)	1601
Acc36I	ACCTGC	2 cut(s)	1060, 1690
AccB1I	GGYRCC	2 cut(s)	1138, 1452
AccBSI	CCGCTC	1 cut(s)	289
AccII	CGCG	5 cut(s)	163, 236, 266, 437, 1614
AcoI	YGGCCR	2 cut(s)	3, 66
AcsI	RAATTY	3 cut(s)	260, 349, 818
AcuI	CTGAAG	2 cut(s)	88, 1445
AcyI	GRCGYC	2 cut(s)	252, 1453
AdeI	CACNNNGTG	1 cut(s)	854
AfaI	GTAC	7 cut(s)	17, 398, 422, 1128, 1803, 1911, 1998
AfiI	CCNNNNNNNGG	5 cut(s)	118, 425, 1091, 1591, 1832
AflIII	ACRYGT	1 cut(s)	1574
AgsI	TTSAA	8 cut(s)	668, 700, 824, 875, 943, 996, 1484, 1721
AhdI	GACNNNNNGTC	1 cut(s)	436
AhlI	ACTAGT	1 cut(s)	1147
AjiI	CACGTC	4 cut(s)	1847, 1895, 1946, 1979
AjnI	CCWGG	5 cut(s)	763, 908, 1134, 1220, 1301
AleI	CACNNNNGTG	1 cut(s)	1893
AluBI	AGCT	6 cut(s)	61, 652, 683, 890, 1272, 1550
AluI	AGCT	6 cut(s)	61, 652, 683, 890, 1272, 1550
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	3 cut(s)	113, 461, 941
AlwNI	CAGNNNCTG	1 cut(s)	1423
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	6 cut(s)	3, 66, 123, 911, 1634, 1735
ApeKI	GCWGC	8 cut(s)	831, 1269, 1681, 1705, 1777, 1780, 1867, 1885
ApoI	RAATTY	3 cut(s)	260, 349, 818
ArsI	GACNNNNNNTTYG	6 cut(s)	460, 492, 848, 880, 1236, 1268
AseI	ATTAAT	1 cut(s)	1235
Asp700I	GAANNNNTTC	1 cut(s)	991
AspLEI	GCGC	6 cut(s)	165, 238, 268, 437, 1455, 1602
AspS9I	GGNCC	5 cut(s)	223, 291, 364, 1348, 1635
AsuC2I	CCSGG	1 cut(s)	377
AsuHPI	GGTGA	1 cut(s)	640
AsuII	TTCGAA	2 cut(s)	300, 527
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	4 cut(s)	223, 291, 364, 1348
BaeGI	GKGCMC	2 cut(s)	1085, 1966
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	1138, 1452
BanII	GRGCYC	2 cut(s)	63, 675
BauI	CACGAG	1 cut(s)	284
BbsI	GAAGAC	3 cut(s)	150, 327, 1419
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	8 cut(s)	843, 1281, 1693, 1717, 1789, 1792, 1879, 1897
BccI	CCATC	4 cut(s)	203, 611, 716, 995
BceAI	ACGGC	5 cut(s)	215, 403, 415, 448, 2015
BciT130I	CCWGG	5 cut(s)	765, 910, 1136, 1222, 1303
BcnI	CCSGG	1 cut(s)	377
BcoDI	GTCTC	3 cut(s)	113, 461, 941
BcuI	ACTAGT	1 cut(s)	1147
BfaI	CTAG	4 cut(s)	80, 570, 924, 1148
BfmI	CTRYAG	3 cut(s)	891, 915, 1865
BfoI	RGCGCY	1 cut(s)	1456
BfuAI	ACCTGC	2 cut(s)	1060, 1690
Bme1390I	CCNGG	6 cut(s)	377, 765, 910, 1136, 1222, 1303
Bme18I	GGWCC	4 cut(s)	223, 291, 364, 1348
BmeRI	GACNNNNNGTC	1 cut(s)	436
BmeT110I	CYCGRG	1 cut(s)	245
BmgBI	CACGTC	4 cut(s)	1847, 1895, 1946, 1979
BmgT120I	GGNCC	5 cut(s)	223, 291, 364, 1348, 1635
BmiI	GGNNCC	5 cut(s)	293, 1140, 1300, 1350, 1454
BmrFI	CCNGG	6 cut(s)	377, 765, 910, 1136, 1222, 1303
BmsI	GCATC	2 cut(s)	1298, 1402
BpiI	GAAGAC	3 cut(s)	150, 327, 1419
BpmI	CTGGAG	2 cut(s)	626, 1317
Bpu14I	TTCGAA	2 cut(s)	300, 527
BpuEI	CTTGAG	1 cut(s)	674
BpuMI	CCSGG	1 cut(s)	377
BsaAI	YACGTR	2 cut(s)	851, 1646
BsaHI	GRCGYC	2 cut(s)	252, 1453
BsaJI	CCNNGG	3 cut(s)	764, 1220, 1352
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	5 cut(s)	118, 425, 1091, 1591, 1832
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	3 cut(s)	1417, 1454, 1456
Bse3DI	GCAATG	1 cut(s)	643
BseBI	CCWGG	5 cut(s)	765, 910, 1136, 1222, 1303
BseDI	CCNNGG	3 cut(s)	764, 1220, 1352
BseGI	GGATG	3 cut(s)	195, 1393, 1600
BseLI	CCNNNNNNNGG	5 cut(s)	118, 425, 1091, 1591, 1832
BseMI	GCAATG	1 cut(s)	643
BseMII	CTCAG	2 cut(s)	462, 1095
BseNI	ACTGG	3 cut(s)	1417, 1454, 1456
BseRI	GAGGAG	1 cut(s)	159
BseSI	GKGCMC	2 cut(s)	1085, 1966
BseXI	GCAGC	8 cut(s)	843, 1281, 1693, 1717, 1789, 1792, 1879, 1897
BseYI	CCCAGC	2 cut(s)	542, 548
BsgI	GTGCAG	3 cut(s)	995, 1724, 1796
Bsh1236I	CGCG	5 cut(s)	163, 236, 266, 437, 1614
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	6 cut(s)	5, 68, 125, 913, 1636, 1737
BshNI	GGYRCC	2 cut(s)	1138, 1452
BsiEI	CGRYCG	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	4 cut(s)	334, 377, 458, 1633
BslFI	GGGAC	3 cut(s)	277, 359, 1334
BslI	CCNNNNNNNGG	5 cut(s)	118, 425, 1091, 1591, 1832
BsmAI	GTCTC	3 cut(s)	113, 461, 941
BsmFI	GGGAC	3 cut(s)	277, 359, 1334
BsmI	GAATGC	1 cut(s)	1357
BsnI	GGCC	6 cut(s)	5, 68, 125, 913, 1636, 1737
BsoBI	CYCGRG	1 cut(s)	245
Bsp119I	TTCGAA	2 cut(s)	300, 527
Bsp1286I	GDGCHC	4 cut(s)	63, 675, 1085, 1966
Bsp1407I	TGTACA	1 cut(s)	1909
Bsp143I	GATC	3 cut(s)	25, 343, 1388
Bsp19I	CCATGG	1 cut(s)	1352
BspANI	GGCC	6 cut(s)	5, 68, 125, 913, 1636, 1737
BspCNI	CTCAG	2 cut(s)	463, 1096
BspFNI	CGCG	5 cut(s)	163, 236, 266, 437, 1614
BspLI	GGNNCC	5 cut(s)	293, 1140, 1300, 1350, 1454
BspMAI	CTGCAG	2 cut(s)	919, 1869
BspMI	ACCTGC	2 cut(s)	1060, 1690
BspT104I	TTCGAA	2 cut(s)	300, 527
BspT107I	GGYRCC	2 cut(s)	1138, 1452
BsrBI	CCGCTC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	643
BsrFI	RCCGGY	1 cut(s)	457
BsrGI	TGTACA	1 cut(s)	1909
BsrI	ACTGG	3 cut(s)	1417, 1454, 1456
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	3 cut(s)	764, 1220, 1352
BssMI	GATC	3 cut(s)	25, 343, 1388
BssNI	GRCGYC	2 cut(s)	252, 1453
BssSI	CACGAG	1 cut(s)	284
BssT1I	CCWWGG	1 cut(s)	1352
Bst2BI	CACGAG	1 cut(s)	284
Bst2UI	CCWGG	5 cut(s)	765, 910, 1136, 1222, 1303
Bst4CI	ACNGT	3 cut(s)	37, 1080, 1121
Bst6I	CTCTTC	2 cut(s)	302, 504
BstACI	GRCGYC	2 cut(s)	252, 1453
BstAUI	TGTACA	1 cut(s)	1909
BstBAI	YACGTR	2 cut(s)	851, 1646
BstBI	TTCGAA	2 cut(s)	300, 527
BstC8I	GCNNGC	2 cut(s)	915, 1739
BstDEI	CTNAG	2 cut(s)	471, 1104
BstDSI	CCRYGG	1 cut(s)	1352
BstENI	CCTNNNNNAGG	1 cut(s)	1089
BstF5I	GGATG	3 cut(s)	195, 1393, 1600
BstFNI	CGCG	5 cut(s)	163, 236, 266, 437, 1614
BstH2I	RGCGCY	1 cut(s)	1456
BstHHI	GCGC	6 cut(s)	165, 238, 268, 437, 1455, 1602
BstKTI	GATC	3 cut(s)	28, 346, 1391
BstMAI	GTCTC	3 cut(s)	113, 461, 941
BstMBI	GATC	3 cut(s)	25, 343, 1388
BstMCI	CGRYCG	1 cut(s)	331
BstNI	CCWGG	5 cut(s)	765, 910, 1136, 1222, 1303
BstNSI	RCATGY	5 cut(s)	733, 1046, 1374, 1578, 1811
BstSCI	CCNGG	6 cut(s)	375, 763, 908, 1134, 1220, 1301
BstSFI	CTRYAG	3 cut(s)	891, 915, 1865
BstSLI	GKGCMC	2 cut(s)	1085, 1966
BstUI	CGCG	5 cut(s)	163, 236, 266, 437, 1614
BstV1I	GCAGC	8 cut(s)	843, 1281, 1693, 1717, 1789, 1792, 1879, 1897
BstV2I	GAAGAC	3 cut(s)	150, 327, 1419
BsuRI	GGCC	6 cut(s)	5, 68, 125, 913, 1636, 1737
BtgI	CCRYGG	1 cut(s)	1352
BtgZI	GCGATG	1 cut(s)	82
BtrI	CACGTC	4 cut(s)	1847, 1895, 1946, 1979
BtsCI	GGATG	3 cut(s)	195, 1393, 1600
BtsI	GCAGTG	1 cut(s)	934
BtsIMutI	CAGTG	5 cut(s)	934, 972, 1085, 1447, 1463
BveI	ACCTGC	2 cut(s)	1060, 1690
Cac8I	GCNNGC	2 cut(s)	915, 1739
CaiI	CAGNNNCTG	1 cut(s)	1423
CfoI	GCGC	6 cut(s)	165, 238, 268, 437, 1455, 1602
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	5 cut(s)	223, 291, 364, 1348, 1635
CseI	GACGC	1 cut(s)	426
Csp6I	GTAC	7 cut(s)	16, 397, 421, 1127, 1802, 1910, 1997
CspCI	CAANNNNNGTGG	2 cut(s)	1493, 1528
CviQI	GTAC	7 cut(s)	16, 397, 421, 1127, 1802, 1910, 1997
DdeI	CTNAG	2 cut(s)	471, 1104
DinI	GGCGCC	1 cut(s)	1454
DpnI	GATC	3 cut(s)	27, 345, 1390
DpnII	GATC	3 cut(s)	25, 343, 1388
DraIII	CACNNNGTG	1 cut(s)	854
DrdI	GACNNNNNNGTC	1 cut(s)	230
DriI	GACNNNNNGTC	1 cut(s)	436
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	2 cut(s)	3, 66
Eam1104I	CTCTTC	2 cut(s)	302, 504
Eam1105I	GACNNNNNGTC	1 cut(s)	436
EarI	CTCTTC	2 cut(s)	302, 504
EciI	GGCGGA	3 cut(s)	162, 168, 174
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	1352
Eco24I	GRGCYC	2 cut(s)	63, 675
Eco47I	GGWCC	4 cut(s)	223, 291, 364, 1348
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	2 cut(s)	88, 1445
Eco88I	CYCGRG	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	61
EcoNI	CCTNNNNNAGG	1 cut(s)	1089
EcoO109I	RGGNCCY	1 cut(s)	1348
EcoRII	CCWGG	5 cut(s)	763, 908, 1134, 1220, 1301
EcoT14I	CCWWGG	1 cut(s)	1352
EcoT22I	ATGCAT	1 cut(s)	1313
EcoT38I	GRGCYC	2 cut(s)	63, 675
EgeI	GGCGCC	1 cut(s)	1454
EheI	GGCGCC	1 cut(s)	1454
ErhI	CCWWGG	1 cut(s)	1352
FalI	AAGNNNNNCTT	2 cut(s)	1238, 1270
FaqI	GGGAC	3 cut(s)	277, 359, 1334
FauI	CCCGC	1 cut(s)	1273
FokI	GGATG	3 cut(s)	182, 1380, 1607
FriOI	GRGCYC	2 cut(s)	63, 675
FspBI	CTAG	4 cut(s)	80, 570, 924, 1148
FspI	TGCGCA	1 cut(s)	1601
GlaI	GCGC	6 cut(s)	164, 237, 267, 436, 1454, 1601
GsaI	CCCAGC	2 cut(s)	546, 552
GsuI	CTGGAG	2 cut(s)	626, 1317
HaeII	RGCGCY	1 cut(s)	1456
HaeIII	GGCC	6 cut(s)	5, 68, 125, 913, 1636, 1737
HapII	CCGG	4 cut(s)	334, 377, 458, 1633
HgaI	GACGC	1 cut(s)	426
HhaI	GCGC	6 cut(s)	165, 238, 268, 437, 1455, 1602
Hin1I	GRCGYC	2 cut(s)	252, 1453
Hin6I	GCGC	6 cut(s)	163, 236, 266, 435, 1453, 1600
HinP1I	GCGC	6 cut(s)	163, 236, 266, 435, 1453, 1600
HinfI	GANTC	6 cut(s)	83, 337, 524, 601, 1170, 1178
HpaII	CCGG	4 cut(s)	334, 377, 458, 1633
HphI	GGTGA	1 cut(s)	640
Hpy166II	GTNNAC	4 cut(s)	1844, 1898, 1949, 1982
Hpy188I	TCNGA	7 cut(s)	46, 88, 348, 582, 1105, 1363, 1715
Hpy188III	TCNNGA	6 cut(s)	256, 341, 605, 692, 1088, 1296
Hpy8I	GTNNAC	4 cut(s)	1844, 1898, 1949, 1982
HpyCH4III	ACNGT	3 cut(s)	37, 1080, 1121
HpyF3I	CTNAG	2 cut(s)	471, 1104
Hsp92I	GRCGYC	2 cut(s)	252, 1453
HspAI	GCGC	6 cut(s)	163, 236, 266, 435, 1453, 1600
KasI	GGCGCC	1 cut(s)	1452
Kzo9I	GATC	3 cut(s)	25, 343, 1388
LmnI	GCTCC	4 cut(s)	390, 649, 1298, 1547
Lsp1109I	GCAGC	8 cut(s)	843, 1281, 1693, 1717, 1789, 1792, 1879, 1897
LweI	GCATC	2 cut(s)	1298, 1402
MaeI	CTAG	4 cut(s)	80, 570, 924, 1148
MaeIII	GTNAC	6 cut(s)	563, 706, 745, 854, 1192, 1499
MalI	GATC	3 cut(s)	27, 345, 1390
MbiI	CCGCTC	1 cut(s)	289
MboI	GATC	3 cut(s)	25, 343, 1388
MboII	GAAGA	8 cut(s)	150, 289, 332, 521, 610, 825, 1173, 1424
MfeI	CAATTG	2 cut(s)	996, 1339
MhlI	GDGCHC	4 cut(s)	63, 675, 1085, 1966
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	1453
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	111
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	1313
MroXI	GAANNNNTTC	1 cut(s)	991
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	861, 1053, 1062, 1235, 1464
MslI	CAYNNNNRTG	1 cut(s)	1893
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	4 cut(s)	334, 377, 458, 1633
MspR9I	CCNGG	6 cut(s)	377, 765, 910, 1136, 1222, 1303
MunI	CAATTG	2 cut(s)	996, 1339
Mva1269I	GAATGC	1 cut(s)	1357
MvaI	CCWGG	5 cut(s)	765, 910, 1136, 1222, 1303
MvnI	CGCG	5 cut(s)	163, 236, 266, 437, 1614
NarI	GGCGCC	1 cut(s)	1453
NciI	CCSGG	1 cut(s)	377
NcoI	CCATGG	1 cut(s)	1352
NdeII	GATC	3 cut(s)	25, 343, 1388
NlaIV	GGNNCC	5 cut(s)	293, 1140, 1300, 1350, 1454
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	4 cut(s)	563, 706, 854, 1192
NsbI	TGCGCA	1 cut(s)	1601
NsiI	ATGCAT	1 cut(s)	1313
NspI	RCATGY	5 cut(s)	733, 1046, 1374, 1578, 1811
NspV	TTCGAA	2 cut(s)	300, 527
OliI	CACNNNNGTG	1 cut(s)	1893
PaeR7I	CTCGAG	1 cut(s)	245
PaqCI	CACCTGC	2 cut(s)	1060, 1690
PciI	ACATGT	1 cut(s)	1574
PcsI	WCGNNNNNNNCGW	5 cut(s)	207, 210, 282, 446, 449
PctI	GAATGC	1 cut(s)	1357
PdmI	GAANNNNTTC	1 cut(s)	991
PfeI	GAWTC	5 cut(s)	337, 524, 601, 1170, 1178
PflFI	GACNNNGTC	1 cut(s)	362
PfoI	TCCNGGA	1 cut(s)	375
PleI	GAGTC	1 cut(s)	77
PluTI	GGCGCC	1 cut(s)	1456
PpsI	GAGTC	1 cut(s)	77
Ppu21I	YACGTR	2 cut(s)	851, 1646
PpuMI	RGGWCCY	1 cut(s)	1348
PscI	ACATGT	1 cut(s)	1574
PshBI	ATTAAT	1 cut(s)	1235
Psp124BI	GAGCTC	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	1348
Psp6I	CCWGG	5 cut(s)	763, 908, 1134, 1220, 1301
PspFI	CCCAGC	2 cut(s)	542, 548
PspGI	CCWGG	5 cut(s)	763, 908, 1134, 1220, 1301
PspN4I	GGNNCC	5 cut(s)	293, 1140, 1300, 1350, 1454
PspPI	GGNCC	5 cut(s)	223, 291, 364, 1348, 1635
PspPPI	RGGWCCY	1 cut(s)	1348
PspXI	VCTCGAGB	1 cut(s)	245
PstI	CTGCAG	2 cut(s)	919, 1869
PstNI	CAGNNNCTG	1 cut(s)	1423
PsyI	GACNNNGTC	1 cut(s)	362
RsaI	GTAC	7 cut(s)	17, 398, 422, 1128, 1803, 1911, 1998
RsaNI	GTAC	7 cut(s)	16, 397, 421, 1127, 1802, 1910, 1997
RseI	CAYNNNNRTG	1 cut(s)	1893
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	5 cut(s)	861, 1053, 1062, 1235, 1464
Sau3AI	GATC	3 cut(s)	25, 343, 1388
Sau96I	GGNCC	5 cut(s)	223, 291, 364, 1348, 1635
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	6 cut(s)	377, 765, 910, 1136, 1222, 1303
SduI	GDGCHC	4 cut(s)	63, 675, 1085, 1966
SfaNI	GCATC	2 cut(s)	1298, 1402
SfcI	CTRYAG	3 cut(s)	891, 915, 1865
SfoI	GGCGCC	1 cut(s)	1454
Sfr274I	CTCGAG	1 cut(s)	245
SfuI	TTCGAA	2 cut(s)	300, 527
SinI	GGWCC	4 cut(s)	223, 291, 364, 1348
SlaI	CTCGAG	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	1893
SmlI	CTYRAG	2 cut(s)	245, 653
SmoI	CTYRAG	2 cut(s)	245, 653
SpeI	ACTAGT	1 cut(s)	1147
SspDI	GGCGCC	1 cut(s)	1452
SspI	AATATT	2 cut(s)	827, 1114
SspMI	CTAG	4 cut(s)	80, 570, 924, 1148
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	6 cut(s)	375, 763, 908, 1134, 1220, 1301
StyI	CCWWGG	1 cut(s)	1352
TaaI	ACNGT	3 cut(s)	37, 1080, 1121
TaqI	TCGA	9 cut(s)	93, 246, 300, 327, 452, 527, 588, 985, 1771
TatI	WGTACW	2 cut(s)	1801, 1909
TauI	GCSGC	4 cut(s)	71, 190, 193, 1681
TfiI	GAWTC	5 cut(s)	337, 524, 601, 1170, 1178
Tru1I	TTAA	5 cut(s)	861, 1053, 1062, 1235, 1464
Tru9I	TTAA	5 cut(s)	861, 1053, 1062, 1235, 1464
TscAI	CASTG	5 cut(s)	934, 979, 1085, 1454, 1463
TseFI	GTSAC	4 cut(s)	563, 706, 854, 1192
TseI	GCWGC	8 cut(s)	831, 1269, 1681, 1705, 1777, 1780, 1867, 1885
Tsp45I	GTSAC	4 cut(s)	563, 706, 854, 1192
TspDTI	ATGAA	6 cut(s)	1049, 1328, 1457, 1767, 1833, 1929
TspRI	CASTG	5 cut(s)	934, 979, 1085, 1454, 1463
Tth111I	GACNNNGTC	1 cut(s)	362
VpaK11BI	GGWCC	4 cut(s)	223, 291, 364, 1348
VspI	ATTAAT	1 cut(s)	1235
XagI	CCTNNNNNAGG	1 cut(s)	1089
XapI	RAATTY	3 cut(s)	260, 349, 818
XceI	RCATGY	5 cut(s)	733, 1046, 1374, 1578, 1811
XhoI	CTCGAG	1 cut(s)	245
XmnI	GAANNNNTTC	1 cut(s)	991
XspI	CTAG	4 cut(s)	80, 570, 924, 1148
ZraI	GACGTC	1 cut(s)	253
Zsp2I	ATGCAT	1 cut(s)	1313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.