Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009641

Physical Location & Seq

Genomic Coordinates Forward (+)

2896570 .. 2898231

Gene Structure 1662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g05490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCTACCCTCGACGTTGACTGTAATGGCTTGGTCATAAAAACAATCTCGAAGAAACCTCCAAAACACCACACTCTGAAAATTATGTCGTTTTCATCTCTGAAATCTGAGGATAGATTTGAATCTGGGTACTTTGAGGCTGGAGGATACAGTTGGAAACTAGTGCTCTTTCCAAATGGAAATAAGAAGCGCAATGTGACTGACCACATTTCTCTGTACTTGGAGATGGCTGGAGAGAAACCAATAAGTACTGGCCTGGTGGTAACGGTTGATTACAAGTTGTTTTTGCTCAACCGGCAGAAGGAAACGAAGACCTACCTTGTTCGTGAAGATGCCAATAAAAAGGAGCAAAAGTATTGCTTTTATCGGACAATTGTTGGTGGTTCTGCCGGATTCGATCGGTTTATCTCTCTTGAAGATTTCAATAACGTCTGCAATGGTTACCTGGTTGATGACCAGTGTGAGTTTGGAGCGGAGGTCTTTGTTTCTGAGATGAGAAAAGGCAAAGGAGAGATGGTAGCAATGAATCTCAACACTTATGTACAAGTTTCCCTCTATCCCAAGGGAACATCTGCTGGAAAGGGTAGTCATGTTTCTGTTTATTTGCGAATGGATGAAACTGAAAAGCTTCCTACTGGCTCTAAGATACTCGCACAGTTTAAAGTACGCATTCTGGATCAGGTTCATGGCAAACATATTGTCCAAGAAGCTAAACACTGGTTCAGTGCCCCAAGCTGGGGTTTGGGTTGGCCTGAACTCATTACACAGGAAGCAAATGCAGCATTTCTTAAGAATGACATCTGTGTCATCGAGACGGAAATCATTATTTTAGGAGTTTCTATCCCAGGGATTTCTTGGACGTCGCCATGTTTCATAAGAAGGATAACTGCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

299

Amino Acids

33.59

Weight (kDa)

8.59

Isoelectric Point (pI)

22.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	23 - 160	4.9e-28	MATH domain
MATH	PF00917	30 - 161	1.4e-08	MATH domain
MATH_2	PF22486	181 - 274	1.3e-16	MATH domain
MATH	PF00917	186 - 276	3.2e-06	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05490 FvH4_2g27890 FvH4_4g21292
rosa_chinensis	RchiOBHm_Chr4g0426991 RchiOBHm_Chr5g0074421
rosa_laevigata	RLG00000007268 RLG00000036474
rosa_multiflora	Rmu_sc0000573.1_g000005 Rmu_sc0000953.1_g000017
rosa_roxburghii	Rroxscaffold_1G00007120 Rroxscaffold_5G00368880
rosa_rugosa	Rorug04G0215400 Rorug05G0431500
rosa_samantha	Rh4AG271000 Rh4BG277200 Rh4CG291900 Rh4DG274400 Rh5AG488800 Rh5BG509500 Rh5CG533300
rosa_wichuraiana	Rw4G023520 Rw5G045320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	803
AatII	GACGTC	1 cut(s)	863
AccBSI	CCGCTC	1 cut(s)	473
AciI	CCGC	1 cut(s)	473
AclWI	GGATC	1 cut(s)	684
AcyI	GRCGYC	1 cut(s)	860
AfaI	GTAC	5 cut(s)	131, 218, 250, 543, 666
AfiI	CCNNNNNNNGG	4 cut(s)	301, 735, 736, 737
AflII	CTTAAG	1 cut(s)	788
AgsI	TTSAA	3 cut(s)	122, 416, 424
AhlI	ACTAGT	1 cut(s)	160
AjnI	CCWGG	3 cut(s)	255, 444, 844
AluBI	AGCT	3 cut(s)	628, 710, 735
AluI	AGCT	3 cut(s)	628, 710, 735
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	806
AlwI	GGATC	1 cut(s)	684
AoxI	GGCC	2 cut(s)	253, 749
ApeKI	GCWGC	1 cut(s)	779
ArsI	GACNNNNNNTTYG	2 cut(s)	684, 716
Asp700I	GAANNNNTTC	1 cut(s)	627
AspLEI	GCGC	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	730
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	791
BccI	CCATC	2 cut(s)	220, 508
BciT130I	CCWGG	3 cut(s)	257, 446, 846
BciVI	GTATCC	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	806
BcuI	ACTAGT	1 cut(s)	160
BfaI	CTAG	1 cut(s)	161
BfrI	CTTAAG	1 cut(s)	788
BfuI	GTATCC	1 cut(s)	140
BisI	GCNGC	1 cut(s)	780
BlsI	GCNGC	1 cut(s)	781
BmcAI	AGTACT	1 cut(s)	250
Bme1390I	CCNGG	3 cut(s)	257, 446, 846
BmrFI	CCNGG	3 cut(s)	257, 446, 846
BmsI	GCATC	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	317
BpmI	CTGGAG	2 cut(s)	162, 252
BsaBI	GATNNNNATC	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	860
BsaJI	CCNNGG	3 cut(s)	561, 844, 845
BsaXI	ACNNNNNCTCC	6 cut(s)	338, 368, 462, 492, 501, 531
Bsc4I	CCNNNNNNNGG	4 cut(s)	301, 735, 736, 737
Bse118I	RCCGGY	1 cut(s)	294
Bse1I	ACTGG	4 cut(s)	256, 457, 640, 722
Bse3DI	GCAATG	3 cut(s)	199, 442, 528
Bse8I	GATNNNNATC	1 cut(s)	121
BseBI	CCWGG	3 cut(s)	257, 446, 846
BseDI	CCNNGG	3 cut(s)	561, 844, 845
BseGI	GGATG	1 cut(s)	619
BseJI	GATNNNNATC	1 cut(s)	121
BseLI	CCNNNNNNNGG	4 cut(s)	301, 735, 736, 737
BseMI	GCAATG	3 cut(s)	199, 442, 528
BseMII	CTCAG	2 cut(s)	99, 480
BseNI	ACTGG	4 cut(s)	256, 457, 640, 722
BseSI	GKGCMC	1 cut(s)	730
BseXI	GCAGC	1 cut(s)	791
BseYI	CCCAGC	1 cut(s)	735
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	2 cut(s)	255, 751
BsiEI	CGRYCG	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	295, 390
BslI	CCNNNNNNNGG	4 cut(s)	301, 735, 736, 737
BsmAI	GTCTC	1 cut(s)	806
BsmBI	CGTCTC	1 cut(s)	806
BsmI	GAATGC	1 cut(s)	669
BsnI	GGCC	2 cut(s)	255, 751
Bsp1286I	GDGCHC	2 cut(s)	168, 730
Bsp1407I	TGTACA	1 cut(s)	541
Bsp143I	GATC	2 cut(s)	397, 676
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	2 cut(s)	255, 751
BspCNI	CTCAG	2 cut(s)	100, 481
BspPI	GGATC	1 cut(s)	684
BspTI	CTTAAG	1 cut(s)	788
BsrBI	CCGCTC	1 cut(s)	473
BsrDI	GCAATG	3 cut(s)	199, 442, 528
BsrFI	RCCGGY	1 cut(s)	294
BsrGI	TGTACA	1 cut(s)	541
BsrI	ACTGG	4 cut(s)	256, 457, 640, 722
BssAI	RCCGGY	1 cut(s)	294
BssECI	CCNNGG	3 cut(s)	561, 844, 845
BssMI	GATC	2 cut(s)	397, 676
BssNI	GRCGYC	1 cut(s)	860
BssT1I	CCWWGG	1 cut(s)	561
Bst2UI	CCWGG	3 cut(s)	257, 446, 846
Bst4CI	ACNGT	4 cut(s)	23, 152, 268, 657
BstACI	GRCGYC	1 cut(s)	860
BstAFI	CTTAAG	1 cut(s)	788
BstAUI	TGTACA	1 cut(s)	541
BstDEI	CTNAG	3 cut(s)	108, 489, 642
BstEII	GGTNACC	1 cut(s)	440
BstF5I	GGATG	1 cut(s)	619
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	2 cut(s)	400, 679
BstMAI	GTCTC	1 cut(s)	806
BstMBI	GATC	2 cut(s)	397, 676
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	2 cut(s)	295, 779
BstNI	CCWGG	3 cut(s)	257, 446, 846
BstPI	GGTNACC	1 cut(s)	440
BstSCI	CCNGG	3 cut(s)	255, 444, 844
BstSLI	GKGCMC	1 cut(s)	730
BstV1I	GCAGC	1 cut(s)	791
BstV2I	GAAGAC	1 cut(s)	317
BsuI	GTATCC	1 cut(s)	140
BsuRI	GGCC	2 cut(s)	255, 751
BtsCI	GGATG	1 cut(s)	619
BtsIMutI	CAGTG	3 cut(s)	464, 715, 730
CfoI	GCGC	1 cut(s)	192
Cfr10I	RCCGGY	1 cut(s)	294
CsiI	ACCWGGT	1 cut(s)	444
Csp6I	GTAC	5 cut(s)	130, 217, 249, 542, 665
CviAII	CATG	3 cut(s)	590, 686, 867
CviQI	GTAC	5 cut(s)	130, 217, 249, 542, 665
DdeI	CTNAG	3 cut(s)	108, 489, 642
DpnI	GATC	2 cut(s)	399, 678
DpnII	GATC	2 cut(s)	397, 676
DraI	TTTAAA	1 cut(s)	661
DrdI	GACNNNNNNGTC	1 cut(s)	803
DseDI	GACNNNNNNGTC	1 cut(s)	803
Eco130I	CCWWGG	1 cut(s)	561
Eco91I	GGTNACC	1 cut(s)	440
EcoO65I	GGTNACC	1 cut(s)	440
EcoRII	CCWGG	3 cut(s)	255, 444, 844
EcoT14I	CCWWGG	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	561
Esp3I	CGTCTC	1 cut(s)	806
FaeI	CATG	3 cut(s)	593, 689, 870
FaiI	YATR	8 cut(s)	38, 86, 540, 591, 687, 696, 868, 875
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FatI	CATG	3 cut(s)	589, 685, 866
Fnu4HI	GCNGC	1 cut(s)	780
FokI	GGATG	1 cut(s)	626
Fsp4HI	GCNGC	1 cut(s)	780
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	1 cut(s)	780
GsaI	CCCAGC	1 cut(s)	739
GsuI	CTGGAG	2 cut(s)	162, 252
HaeIII	GGCC	2 cut(s)	255, 751
HapII	CCGG	2 cut(s)	295, 390
HhaI	GCGC	1 cut(s)	192
Hin1I	GRCGYC	1 cut(s)	860
Hin1II	CATG	3 cut(s)	593, 689, 870
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	3 cut(s)	122, 393, 526
HpaII	CCGG	2 cut(s)	295, 390
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	5 cut(s)	78, 102, 109, 369, 490
Hpy188III	TCNNGA	5 cut(s)	49, 326, 413, 674, 811
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	2 cut(s)	17, 865
HpyAV	CCTTC	2 cut(s)	295, 873
HpyCH4III	ACNGT	4 cut(s)	23, 152, 268, 657
HpyCH4IV	ACGT	3 cut(s)	15, 429, 860
HpyCH4V	TGCA	2 cut(s)	435, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	295, 779
HpyF3I	CTNAG	3 cut(s)	108, 489, 642
HpySE526I	ACGT	3 cut(s)	15, 429, 860
Hsp92I	GRCGYC	1 cut(s)	860
Hsp92II	CATG	3 cut(s)	593, 689, 870
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	397, 676
LmnI	GCTCC	2 cut(s)	346, 470
Lsp1109I	GCAGC	1 cut(s)	791
LweI	GCATC	1 cut(s)	322
MabI	ACCWGGT	1 cut(s)	444
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	3 cut(s)	15, 429, 860
MaeIII	GTNAC	3 cut(s)	196, 262, 440
MalI	GATC	2 cut(s)	399, 678
MbiI	CCGCTC	1 cut(s)	473
MboI	GATC	2 cut(s)	397, 676
MboII	GAAGA	4 cut(s)	64, 322, 341, 428
MfeI	CAATTG	1 cut(s)	372
MhlI	GDGCHC	2 cut(s)	168, 730
MluCI	AATT	2 cut(s)	81, 372
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	7 cut(s)	20, 69, 103, 130, 137, 469, 563
MroXI	GAANNNNTTC	1 cut(s)	627
MseI	TTAA	2 cut(s)	660, 789
MspCI	CTTAAG	1 cut(s)	788
MspI	CCGG	2 cut(s)	295, 390
MspR9I	CCNGG	3 cut(s)	257, 446, 846
MunI	CAATTG	1 cut(s)	372
Mva1269I	GAATGC	1 cut(s)	669
MvaI	CCWGG	3 cut(s)	257, 446, 846
MwoI	GCNNNNNNNGC	2 cut(s)	295, 779
NdeII	GATC	2 cut(s)	397, 676
NlaIII	CATG	3 cut(s)	593, 689, 870
NmuCI	GTSAC	1 cut(s)	196
PasI	CCCWGGG	1 cut(s)	845
PctI	GAATGC	1 cut(s)	669
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	3 cut(s)	122, 393, 526
PkrI	GCNGC	1 cut(s)	781
Ple19I	CGATCG	1 cut(s)	400
Psp6I	CCWGG	3 cut(s)	255, 444, 844
PspEI	GGTNACC	1 cut(s)	440
PspFI	CCCAGC	1 cut(s)	735
PspGI	CCWGG	3 cut(s)	255, 444, 844
PvuI	CGATCG	1 cut(s)	400
RsaI	GTAC	5 cut(s)	131, 218, 250, 543, 666
RsaNI	GTAC	5 cut(s)	130, 217, 249, 542, 665
SaqAI	TTAA	2 cut(s)	660, 789
SatI	GCNGC	1 cut(s)	780
Sau3AI	GATC	2 cut(s)	397, 676
ScaI	AGTACT	1 cut(s)	250
ScrFI	CCNGG	3 cut(s)	257, 446, 846
SduI	GDGCHC	2 cut(s)	168, 730
SexAI	ACCWGGT	1 cut(s)	444
SfaNI	GCATC	1 cut(s)	322
SmlI	CTYRAG	1 cut(s)	788
SmoI	CTYRAG	1 cut(s)	788
SpeI	ACTAGT	1 cut(s)	160
Sse9I	AATT	2 cut(s)	81, 372
SsiI	CCGC	1 cut(s)	473
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	3 cut(s)	255, 444, 844
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	4 cut(s)	23, 152, 268, 657
TaiI	ACGT	3 cut(s)	18, 432, 863
TaqI	TCGA	4 cut(s)	12, 50, 396, 810
TasI	AATT	2 cut(s)	81, 372
TatI	WGTACW	3 cut(s)	216, 248, 541
TfiI	GAWTC	3 cut(s)	122, 393, 526
Tru1I	TTAA	2 cut(s)	660, 789
Tru9I	TTAA	2 cut(s)	660, 789
TscAI	CASTG	3 cut(s)	464, 722, 730
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	779
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	5 cut(s)	84, 539, 630, 674, 862
TspGWI	ACGGA	1 cut(s)	830
TspRI	CASTG	3 cut(s)	464, 722, 730
Vha464I	CTTAAG	1 cut(s)	788
XcmI	CCANNNNNNNNNTGG	2 cut(s)	464, 852
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	1 cut(s)	161
ZraI	GACGTC	1 cut(s)	861
ZrmI	AGTACT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.