Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009641

Physical Location & Seq

Genomic Coordinates Forward (+)

22030699 .. 22031858

Gene Structure 1160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g27890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCTGCTGCTCCTGACATTGACCAGTACAATGGCGCAGTCTGGAGATCAGTTTCGAAGAAACCTCCAAAACACTACAAAGTGAGCATAACATCGTTTTCAAGTCTAAAATCAACAGAAAAATATGAATCTGGCGAGTTTGAGGCCGGAGGATACATGTGGAAACTAGTGCTCTTCCCCAATGGAAACAAGAACCGTGAGGTGAAAGATCACATCTCTCTCTACTTGGAGTTGGGTACACAAGAAAAAATAAAACCCGGCAAGATTGTAACAATTGATTACAAGTTGTTTTTACTTAATCGGCACAAGGGGAAAAAGAGCTACCTGGTTCTTGAACATTCGAATAAGAAGGAGAACAAGTACTGTATTTATGGCACCATTGTTGGTGGTCTGGCTGGTTTTGATCGGTTCATCCCTCTCAAAGATTTTATTGATGCATCAAATGGTTATCTCATTGATGACACTTGTGAGTTTGGAGCAGAGGTCTTGGTTTCTGAAACGACGAGAAAAAGCAAAGGAGAGTGTTTCTTCATGAACCTCAACAGTACGGGTGATATGTACAAGCATGTTTGGAAGGTTACTAACTTTTCAACGTTAGACGCTACATGTCATTACTCATTACCATTCACTGCTGGAAACCAAAAGTATTGCGCATGGACTTTGAGGCTTTATCCCAATGGAGATATCAGTGGAAAGGGTAGTCATGTTTCTCTTTATTTGGGTTTGCATAATCCACATGAGCTTCCTCCCGGATTGAGAATACTTGCGCTAGTTACTCTACGCATTTTGGATCAAATCAATGGCGACCGGTATACTACTCTCGTTGAAGCCCTCTGGTTCGATCGGAGGTCTAATTGGGGCAATCACCAAATTGTTACACAAAAACAAAACGCAAGGATGTCAATGGATGATAGTTGCCTAATTGAGGTCGAAATTGCTATTCAAGGACTTTCTATGCCAAGAACTTCTACGCGCCGTCGGCCATGGAATTTTAAGTTATTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

336

Amino Acids

38.23

Weight (kDa)

9.15

Isoelectric Point (pI)

32.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	25 - 162	1.9e-26	MATH domain
MATH	PF00917	30 - 162	1e-06	MATH domain
MATH_2	PF22486	188 - 312	2.8e-20	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05490 FvH4_2g27890 FvH4_4g21292
rosa_chinensis	RchiOBHm_Chr4g0426991 RchiOBHm_Chr5g0074421
rosa_laevigata	RLG00000007268 RLG00000036474
rosa_multiflora	Rmu_sc0000573.1_g000005 Rmu_sc0000953.1_g000017
rosa_roxburghii	Rroxscaffold_1G00007120 Rroxscaffold_5G00368880
rosa_rugosa	Rorug04G0215400 Rorug05G0431500
rosa_samantha	Rh4AG271000 Rh4BG277200 Rh4CG291900 Rh4DG274400 Rh5AG488800 Rh5BG509500 Rh5CG533300
rosa_wichuraiana	Rw4G023520 Rw5G045320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	652
AccB1I	GGYRCC	1 cut(s)	374
AccI	GTMKAC	1 cut(s)	812
AccII	CGCG	1 cut(s)	973
AclI	AACGTT	1 cut(s)	593
AclWI	GGATC	1 cut(s)	798
AcoI	YGGCCR	1 cut(s)	980
AcsI	RAATTY	1 cut(s)	988
AfaI	GTAC	5 cut(s)	29, 238, 362, 547, 560
AfiI	CCNNNNNNNGG	1 cut(s)	925
AflIII	ACRYGT	2 cut(s)	156, 605
AgeI	ACCGGT	1 cut(s)	807
AgsI	TTSAA	6 cut(s)	102, 335, 591, 827, 944, 1003
AhlI	ACTAGT	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	2 cut(s)	321, 742
AluI	AGCT	2 cut(s)	321, 742
Alw21I	GWGCWC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	798
AoxI	GGCC	2 cut(s)	144, 980
ApeKI	GCWGC	2 cut(s)	5, 8
ApoI	RAATTY	1 cut(s)	988
AsiGI	ACCGGT	1 cut(s)	807
AspLEI	GCGC	4 cut(s)	38, 653, 769, 975
AsuC2I	CCSGG	2 cut(s)	258, 750
AsuHPI	GGTGA	3 cut(s)	214, 563, 857
AsuII	TTCGAA	2 cut(s)	56, 341
BanI	GGYRCC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	174
BceAI	ACGGC	1 cut(s)	960
BciT130I	CCWGG	1 cut(s)	326
BciVI	GTATCC	1 cut(s)	146
BcnI	CCSGG	2 cut(s)	258, 750
BcuI	ACTAGT	1 cut(s)	166
BfaI	CTAG	2 cut(s)	167, 770
BfuI	GTATCC	1 cut(s)	146
BisI	GCNGC	2 cut(s)	6, 9
BlsI	GCNGC	2 cut(s)	7, 10
BmcAI	AGTACT	1 cut(s)	362
Bme1390I	CCNGG	3 cut(s)	258, 326, 750
BmiI	GGNNCC	1 cut(s)	376
BmrFI	CCNGG	3 cut(s)	258, 326, 750
BmsI	GCATC	2 cut(s)	424, 446
BpmI	CTGGAG	1 cut(s)	64
Bpu14I	TTCGAA	2 cut(s)	56, 341
BpuMI	CCSGG	2 cut(s)	258, 750
BsaJI	CCNNGG	1 cut(s)	983
BsaWI	WCCGGW	1 cut(s)	807
BsaXI	ACNNNNNCTCC	4 cut(s)	344, 374, 468, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	925
Bse118I	RCCGGY	1 cut(s)	807
Bse1I	ACTGG	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	983
BseGI	GGATG	3 cut(s)	411, 903, 913
BseLI	CCNNNNNNNGG	1 cut(s)	925
BseNI	ACTGG	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	973
Bsh1285I	CGRYCG	2 cut(s)	808, 844
BshFI	GGCC	2 cut(s)	146, 982
BshNI	GGYRCC	1 cut(s)	374
BshTI	ACCGGT	1 cut(s)	807
BsiEI	CGRYCG	2 cut(s)	808, 844
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	4 cut(s)	147, 258, 750, 808
BslI	CCNNNNNNNGG	1 cut(s)	925
BsnI	GGCC	2 cut(s)	146, 982
Bsp119I	TTCGAA	2 cut(s)	56, 341
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp1407I	TGTACA	1 cut(s)	558
Bsp143I	GATC	5 cut(s)	47, 208, 403, 790, 841
Bsp19I	CCATGG	1 cut(s)	983
BspANI	GGCC	2 cut(s)	146, 982
BspFNI	CGCG	1 cut(s)	973
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	1 cut(s)	376
BspPI	GGATC	1 cut(s)	798
BspQI	GCTCTTC	1 cut(s)	179
BspT104I	TTCGAA	2 cut(s)	56, 341
BspT107I	GGYRCC	1 cut(s)	374
BsrFI	RCCGGY	1 cut(s)	807
BsrGI	TGTACA	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	807
BssECI	CCNNGG	1 cut(s)	983
BssMI	GATC	5 cut(s)	47, 208, 403, 790, 841
BssNAI	GTATAC	1 cut(s)	813
BssT1I	CCWWGG	1 cut(s)	983
Bst1107I	GTATAC	1 cut(s)	813
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	3 cut(s)	197, 365, 545
Bst6I	CTCTTC	1 cut(s)	179
BstAUI	TGTACA	1 cut(s)	558
BstBI	TTCGAA	2 cut(s)	56, 341
BstDSI	CCRYGG	1 cut(s)	983
BstENI	CCTNNNNNAGG	1 cut(s)	923
BstF5I	GGATG	3 cut(s)	411, 903, 913
BstFNI	CGCG	1 cut(s)	973
BstHHI	GCGC	4 cut(s)	38, 653, 769, 975
BstKTI	GATC	5 cut(s)	50, 211, 406, 793, 844
BstMBI	GATC	5 cut(s)	47, 208, 403, 790, 841
BstMCI	CGRYCG	2 cut(s)	808, 844
BstMWI	GCNNNNNNNGC	1 cut(s)	979
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	3 cut(s)	160, 569, 609
BstSCI	CCNGG	3 cut(s)	256, 324, 748
BstUI	CGCG	1 cut(s)	973
BstXI	CCANNNNNNTGG	1 cut(s)	32
BstZ17I	GTATAC	1 cut(s)	813
BsuI	GTATCC	1 cut(s)	146
BsuRI	GGCC	2 cut(s)	146, 982
BtgI	CCRYGG	1 cut(s)	983
BtsCI	GGATG	3 cut(s)	411, 903, 913
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	2 cut(s)	627, 694
CciI	TCATGA	1 cut(s)	531
CfoI	GCGC	4 cut(s)	38, 653, 769, 975
Cfr10I	RCCGGY	1 cut(s)	807
CseI	GACGC	1 cut(s)	608
CsiI	ACCWGGT	1 cut(s)	324
Csp6I	GTAC	5 cut(s)	28, 237, 361, 546, 559
CspAI	ACCGGT	1 cut(s)	807
CviAII	CATG	8 cut(s)	157, 532, 566, 606, 654, 704, 737, 984
CviJI	RGCY	8 cut(s)	5, 146, 321, 395, 667, 742, 830, 982
CviKI_1	RGCY	8 cut(s)	5, 146, 321, 395, 667, 742, 830, 982
CviQI	GTAC	5 cut(s)	28, 237, 361, 546, 559
DpnI	GATC	5 cut(s)	49, 210, 405, 792, 843
DpnII	GATC	5 cut(s)	47, 208, 403, 790, 841
EaeI	YGGCCR	1 cut(s)	980
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	983
Eco32I	GATATC	1 cut(s)	685
EcoNI	CCTNNNNNAGG	1 cut(s)	923
EcoRII	CCWGG	1 cut(s)	324
EcoRV	GATATC	1 cut(s)	685
EcoT14I	CCWWGG	1 cut(s)	983
EcoT22I	ATGCAT	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	983
FaeI	CATG	8 cut(s)	160, 535, 569, 609, 657, 707, 740, 987
FatI	CATG	8 cut(s)	156, 531, 565, 605, 653, 703, 736, 983
FblI	GTMKAC	1 cut(s)	812
Fnu4HI	GCNGC	2 cut(s)	6, 9
FokI	GGATG	3 cut(s)	398, 910, 920
Fsp4HI	GCNGC	2 cut(s)	6, 9
FspBI	CTAG	2 cut(s)	167, 770
FspI	TGCGCA	1 cut(s)	652
GlaI	GCGC	4 cut(s)	37, 652, 768, 974
GluI	GCNGC	2 cut(s)	6, 9
GsuI	CTGGAG	1 cut(s)	64
HaeIII	GGCC	2 cut(s)	146, 982
HapII	CCGG	4 cut(s)	147, 258, 750, 808
HgaI	GACGC	1 cut(s)	608
HhaI	GCGC	4 cut(s)	38, 653, 769, 975
Hin1II	CATG	8 cut(s)	160, 535, 569, 609, 657, 707, 740, 987
Hin6I	GCGC	4 cut(s)	36, 651, 767, 973
HinP1I	GCGC	4 cut(s)	36, 651, 767, 973
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	4 cut(s)	147, 258, 750, 808
HphI	GGTGA	3 cut(s)	214, 563, 857
Hpy166II	GTNNAC	2 cut(s)	239, 813
Hpy188I	TCNGA	2 cut(s)	496, 846
Hpy188III	TCNNGA	4 cut(s)	14, 43, 332, 532
Hpy8I	GTNNAC	2 cut(s)	239, 813
Hpy99I	CGWCG	2 cut(s)	505, 981
HpyAV	CCTTC	2 cut(s)	343, 568
HpyCH4III	ACNGT	3 cut(s)	197, 365, 545
HpyCH4IV	ACGT	1 cut(s)	593
HpyCH4V	TGCA	2 cut(s)	437, 727
HpyF10VI	GCNNNNNNNGC	1 cut(s)	979
HpySE526I	ACGT	1 cut(s)	593
Hsp92II	CATG	8 cut(s)	160, 535, 569, 609, 657, 707, 740, 987
HspAI	GCGC	4 cut(s)	36, 651, 767, 973
Kzo9I	GATC	5 cut(s)	47, 208, 403, 790, 841
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	2 cut(s)	16, 476
LweI	GCATC	2 cut(s)	424, 446
MabI	ACCWGGT	1 cut(s)	324
MaeI	CTAG	2 cut(s)	167, 770
MaeII	ACGT	1 cut(s)	593
MaeIII	GTNAC	4 cut(s)	268, 577, 772, 874
MalI	GATC	5 cut(s)	49, 210, 405, 792, 843
MboI	GATC	5 cut(s)	47, 208, 403, 790, 841
MboII	GAAGA	3 cut(s)	70, 166, 520
MfeI	CAATTG	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	7 cut(s)	273, 853, 870, 921, 933, 988, 1003
Mph1103I	ATGCAT	1 cut(s)	439
MseI	TTAA	2 cut(s)	297, 993
MspI	CCGG	4 cut(s)	147, 258, 750, 808
MspR9I	CCNGG	3 cut(s)	258, 326, 750
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	326
MvnI	CGCG	1 cut(s)	973
MwoI	GCNNNNNNNGC	1 cut(s)	979
NciI	CCSGG	2 cut(s)	258, 750
NcoI	CCATGG	1 cut(s)	983
NdeII	GATC	5 cut(s)	47, 208, 403, 790, 841
NlaIII	CATG	8 cut(s)	160, 535, 569, 609, 657, 707, 740, 987
NlaIV	GGNNCC	1 cut(s)	376
NsbI	TGCGCA	1 cut(s)	652
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	3 cut(s)	160, 569, 609
NspV	TTCGAA	2 cut(s)	56, 341
PagI	TCATGA	1 cut(s)	531
PciI	ACATGT	2 cut(s)	156, 605
PciSI	GCTCTTC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	128
PfoI	TCCNGGA	1 cut(s)	748
PinAI	ACCGGT	1 cut(s)	807
PkrI	GCNGC	2 cut(s)	7, 10
Ple19I	CGATCG	1 cut(s)	844
PscI	ACATGT	2 cut(s)	156, 605
Psp1406I	AACGTT	1 cut(s)	593
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	376
PvuI	CGATCG	1 cut(s)	844
RsaI	GTAC	5 cut(s)	29, 238, 362, 547, 560
RsaNI	GTAC	5 cut(s)	28, 237, 361, 546, 559
SapI	GCTCTTC	1 cut(s)	179
SaqAI	TTAA	2 cut(s)	297, 993
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	5 cut(s)	47, 208, 403, 790, 841
ScaI	AGTACT	1 cut(s)	362
ScrFI	CCNGG	3 cut(s)	258, 326, 750
SduI	GDGCHC	1 cut(s)	174
SexAI	ACCWGGT	1 cut(s)	324
SfaNI	GCATC	2 cut(s)	424, 446
SfuI	TTCGAA	2 cut(s)	56, 341
SpeI	ACTAGT	1 cut(s)	166
Sse9I	AATT	7 cut(s)	273, 853, 870, 921, 933, 988, 1003
SspMI	CTAG	2 cut(s)	167, 770
StyD4I	CCNGG	3 cut(s)	256, 324, 748
StyI	CCWWGG	1 cut(s)	983
TaaI	ACNGT	3 cut(s)	197, 365, 545
TaiI	ACGT	1 cut(s)	596
TaqI	TCGA	4 cut(s)	56, 341, 840, 930
TasI	AATT	7 cut(s)	273, 853, 870, 921, 933, 988, 1003
TatI	WGTACW	3 cut(s)	27, 360, 558
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	2 cut(s)	297, 993
Tru9I	TTAA	2 cut(s)	297, 993
TscAI	CASTG	2 cut(s)	634, 694
TseI	GCWGC	2 cut(s)	5, 8
TspDTI	ATGAA	4 cut(s)	141, 400, 520, 548
TspRI	CASTG	2 cut(s)	634, 694
XagI	CCTNNNNNAGG	1 cut(s)	923
XapI	RAATTY	1 cut(s)	988
XceI	RCATGY	3 cut(s)	160, 569, 609
XmiI	GTMKAC	1 cut(s)	812
XspI	CTAG	2 cut(s)	167, 770
ZrmI	AGTACT	1 cut(s)	362
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.