Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009641

Physical Location & Seq

Genomic Coordinates Forward (+)

50569922 .. 50572614

Gene Structure 2693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00368880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAAAATAGTGTCGTTCTCATCTTTAAAATCAGAGGACAGATATGAATCAGGGGAATTTGAGATTGAAGGATACAAATGGAAACTAGTGCTCTTCCCGAGTGGAAACAAGAAGCATAATGTTAATGACCACATCTCTCTCTACCTGGAAATGGGTGGACAAAAAGCAATAGAGACGGGGAGTATTGTAACGGTTGACTACAAGTTTTTTTTGCTTAATCGGCAAAAGGAGAAGAAGACCTACCTGGTTCTTGAAGATGCCAATAAAAAGGAGAAGAAGTATTGTTTTTATAGGACAATTGTTGGTGGTTTGGCTGGATTTGATCGATTTATCTCTATTGAAGATTTTACTGATGCCTTCAATGGTTATCTCATTGATGATACATGTGAGTTTGGAGCGGATGTATTTGTATCTAAATCGAAAAGAAAAGGCAAAGGAGAGCGTGTTTCAATGAATCTCAATACCATTATGTACAAACACACTTGGAAAGTTACTGATTTTTCGAAGTTAGACACACCATCTTGTTCACAACCATTCACCGCTGCAGATCAAAAATATTGCACATGGAAATTGGTGCTCTATCCCAGGGGTCTAGGCATCGGAAAGGGTAGTCATCTTTCTGTTTTTCTGCATGTATATGAACCGGAAAACCAGCTTCCTATTGGATCTAAGATACTTGCGGAGTATACCATACGCATTATGGATCAAATCCATGGCAAGCATCGTTCTATTAAAGGGCTGGATAGAAGGAAGAAGAATAGGGTGAAAGGGCTTTATAACGATGCTGGTGTTTGGTGTACGTACGGAGGATGGAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

273

Amino Acids

31.4

Weight (kDa)

9.3

Isoelectric Point (pI)

26.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	2 - 135	5.9e-25	MATH domain
MATH	PF00917	5 - 136	3.7e-07	MATH domain
MATH_2	PF22486	159 - 247	9.1e-17	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05490 FvH4_2g27890 FvH4_4g21292
rosa_chinensis	RchiOBHm_Chr4g0426991 RchiOBHm_Chr5g0074421
rosa_laevigata	RLG00000007268 RLG00000036474
rosa_multiflora	Rmu_sc0000573.1_g000005 Rmu_sc0000953.1_g000017
rosa_roxburghii	Rroxscaffold_1G00007120 Rroxscaffold_5G00368880
rosa_rugosa	Rorug04G0215400 Rorug05G0431500
rosa_samantha	Rh4AG271000 Rh4BG277200 Rh4CG291900 Rh4DG274400 Rh5AG488800 Rh5BG509500 Rh5CG533300
rosa_wichuraiana	Rw4G023520 Rw5G045320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	777
AccBSI	CCGCTC	1 cut(s)	398
AccI	GTMKAC	1 cut(s)	686
AciI	CCGC	3 cut(s)	398, 540, 680
AclWI	GGATC	2 cut(s)	673, 711
AcsI	RAATTY	1 cut(s)	56
AfaI	GTAC	3 cut(s)	473, 799, 803
AfiI	CCNNNNNNNGG	1 cut(s)	151
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	5 cut(s)	68, 254, 341, 361, 450
AhlI	ACTAGT	1 cut(s)	85
AjnI	CCWGG	3 cut(s)	144, 243, 584
AluBI	AGCT	2 cut(s)	655, 818
AluI	AGCT	2 cut(s)	655, 818
Alw21I	GWGCWC	2 cut(s)	93, 579
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	2 cut(s)	673, 711
Ama87I	CYCGRG	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	529, 775
AsuII	TTCGAA	1 cut(s)	503
AvaI	CYCGRG	1 cut(s)	97
BarI	GAAGNNNNNNTAC	2 cut(s)	224, 256
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	2 cut(s)	93, 579
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	2 cut(s)	526, 804
BciT130I	CCWGG	3 cut(s)	146, 245, 586
BciVI	GTATCC	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	167
BcuI	ACTAGT	1 cut(s)	85
BfaI	CTAG	2 cut(s)	86, 593
BfmI	CTRYAG	1 cut(s)	543
BfuI	GTATCC	1 cut(s)	65
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
Bme1390I	CCNGG	3 cut(s)	146, 245, 586
BmeT110I	CYCGRG	1 cut(s)	97
BmrFI	CCNGG	3 cut(s)	146, 245, 586
BmsI	GCATC	5 cut(s)	247, 343, 606, 730, 772
BpiI	GAAGAC	1 cut(s)	242
Bpu14I	TTCGAA	1 cut(s)	503
Bsa29I	ATCGAT	1 cut(s)	325
BsaAI	YACGTR	1 cut(s)	801
BsaBI	GATNNNNATC	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	584, 585, 712
BsaWI	WCCGGW	1 cut(s)	643
BsaXI	ACNNNNNCTCC	6 cut(s)	263, 293, 387, 417, 429, 459
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse8I	GATNNNNATC	1 cut(s)	46
BseBI	CCWGG	3 cut(s)	146, 245, 586
BseCI	ATCGAT	1 cut(s)	325
BseDI	CCNNGG	3 cut(s)	584, 585, 712
BseGI	GGATG	2 cut(s)	406, 815
BseJI	GATNNNNATC	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	529
BshVI	ATCGAT	1 cut(s)	325
BsiHKAI	GWGCWC	2 cut(s)	93, 579
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	644
BsiWI	CGTACG	1 cut(s)	801
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	167
BsmBI	CGTCTC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	97
Bsp119I	TTCGAA	1 cut(s)	503
Bsp1286I	GDGCHC	2 cut(s)	93, 579
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	4 cut(s)	322, 547, 665, 703
Bsp19I	CCATGG	1 cut(s)	712
BspACI	CCGC	3 cut(s)	398, 540, 680
BspDI	ATCGAT	1 cut(s)	325
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	2 cut(s)	673, 711
BspQI	GCTCTTC	1 cut(s)	98
BspT104I	TTCGAA	1 cut(s)	503
BsrBI	CCGCTC	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	471
BssECI	CCNNGG	3 cut(s)	584, 585, 712
BssMI	GATC	4 cut(s)	322, 547, 665, 703
BssNAI	GTATAC	1 cut(s)	687
BssT1I	CCWWGG	1 cut(s)	712
Bst1107I	GTATAC	1 cut(s)	687
Bst2UI	CCWGG	3 cut(s)	146, 245, 586
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	98
BstAUI	TGTACA	1 cut(s)	471
BstBAI	YACGTR	1 cut(s)	801
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	719
BstDEI	CTNAG	1 cut(s)	669
BstDSI	CCRYGG	1 cut(s)	712
BstF5I	GGATG	2 cut(s)	406, 815
BstKTI	GATC	4 cut(s)	325, 550, 668, 706
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	4 cut(s)	322, 547, 665, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstNI	CCWGG	3 cut(s)	146, 245, 586
BstNSI	RCATGY	2 cut(s)	387, 635
BstSCI	CCNGG	3 cut(s)	144, 243, 584
BstSFI	CTRYAG	1 cut(s)	543
BstSNI	TACGTA	1 cut(s)	801
BstV1I	GCAGC	1 cut(s)	529
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	665
BstYI	RGATCY	1 cut(s)	665
BstZ17I	GTATAC	1 cut(s)	687
Bsu15I	ATCGAT	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	65
BsuTUI	ATCGAT	1 cut(s)	325
BtgI	CCRYGG	1 cut(s)	712
BtsCI	GGATG	2 cut(s)	406, 815
Cac8I	GCNNGC	1 cut(s)	719
ClaI	ATCGAT	1 cut(s)	325
CsiI	ACCWGGT	1 cut(s)	243
Csp6I	GTAC	3 cut(s)	472, 798, 802
CviAII	CATG	4 cut(s)	384, 564, 632, 713
CviJI	RGCY	5 cut(s)	314, 655, 739, 772, 818
CviKI_1	RGCY	5 cut(s)	314, 655, 739, 772, 818
CviQI	GTAC	3 cut(s)	472, 798, 802
DdeI	CTNAG	1 cut(s)	669
DpnI	GATC	4 cut(s)	324, 549, 667, 705
DpnII	GATC	4 cut(s)	322, 547, 665, 703
DraI	TTTAAA	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco105I	TACGTA	1 cut(s)	801
Eco130I	CCWWGG	1 cut(s)	712
Eco88I	CYCGRG	1 cut(s)	97
EcoRII	CCWGG	3 cut(s)	144, 243, 584
EcoT14I	CCWWGG	1 cut(s)	712
ErhI	CCWWGG	1 cut(s)	712
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	4 cut(s)	387, 567, 635, 716
FatI	CATG	4 cut(s)	383, 563, 631, 712
FblI	GTMKAC	1 cut(s)	686
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	1 cut(s)	413
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	2 cut(s)	86, 593
GluI	GCNGC	1 cut(s)	543
HapII	CCGG	1 cut(s)	644
Hin1II	CATG	4 cut(s)	387, 567, 635, 716
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	47, 454
HpaII	CCGG	1 cut(s)	644
HphI	GGTGA	2 cut(s)	529, 775
Hpy166II	GTNNAC	5 cut(s)	158, 196, 527, 687, 798
Hpy188I	TCNGA	2 cut(s)	34, 602
Hpy188III	TCNNGA	2 cut(s)	97, 251
Hpy8I	GTNNAC	5 cut(s)	158, 196, 527, 687, 798
HpyAV	CCTTC	3 cut(s)	62, 367, 741
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	800
HpyCH4V	TGCA	3 cut(s)	545, 561, 631
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	1 cut(s)	669
HpySE526I	ACGT	1 cut(s)	800
Hsp92II	CATG	4 cut(s)	387, 567, 635, 716
Kzo9I	GATC	4 cut(s)	322, 547, 665, 703
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	395
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	5 cut(s)	247, 343, 606, 730, 772
MabI	ACCWGGT	1 cut(s)	243
MaeI	CTAG	2 cut(s)	86, 593
MaeII	ACGT	1 cut(s)	800
MaeIII	GTNAC	2 cut(s)	187, 490
MalI	GATC	4 cut(s)	324, 549, 667, 705
MbiI	CCGCTC	1 cut(s)	398
MboI	GATC	4 cut(s)	322, 547, 665, 703
MboII	GAAGA	8 cut(s)	85, 244, 247, 266, 286, 353, 763, 766
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	1 cut(s)	665
MhlI	GDGCHC	2 cut(s)	93, 579
MluCI	AATT	3 cut(s)	56, 297, 569
MnlI	CCTC	2 cut(s)	28, 800
MseI	TTAA	4 cut(s)	26, 123, 216, 732
MslI	CAYNNNNRTG	1 cut(s)	636
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	1 cut(s)	644
MspR9I	CCNGG	3 cut(s)	146, 245, 586
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	3 cut(s)	146, 245, 586
MwoI	GCNNNNNNNGC	1 cut(s)	220
NcoI	CCATGG	1 cut(s)	712
NdeII	GATC	4 cut(s)	322, 547, 665, 703
NlaIII	CATG	4 cut(s)	387, 567, 635, 716
NspI	RCATGY	2 cut(s)	387, 635
NspV	TTCGAA	1 cut(s)	503
PasI	CCCWGGG	1 cut(s)	585
PciI	ACATGT	1 cut(s)	383
PciSI	GCTCTTC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	47, 454
Pfl23II	CGTACG	1 cut(s)	801
PkrI	GCNGC	1 cut(s)	544
Ppu21I	YACGTR	1 cut(s)	801
PscI	ACATGT	1 cut(s)	383
PsiI	TTATAA	1 cut(s)	777
Psp6I	CCWGG	3 cut(s)	144, 243, 584
PspGI	CCWGG	3 cut(s)	144, 243, 584
PspLI	CGTACG	1 cut(s)	801
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	665
RsaI	GTAC	3 cut(s)	473, 799, 803
RsaNI	GTAC	3 cut(s)	472, 798, 802
RseI	CAYNNNNRTG	1 cut(s)	636
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	4 cut(s)	26, 123, 216, 732
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	4 cut(s)	322, 547, 665, 703
ScrFI	CCNGG	3 cut(s)	146, 245, 586
SduI	GDGCHC	2 cut(s)	93, 579
SetI	ASST	6 cut(s)	147, 242, 246, 657, 803, 820
SexAI	ACCWGGT	1 cut(s)	243
SfaNI	GCATC	5 cut(s)	247, 343, 606, 730, 772
SfcI	CTRYAG	1 cut(s)	543
SfuI	TTCGAA	1 cut(s)	503
SmiMI	CAYNNNNRTG	1 cut(s)	636
SnaBI	TACGTA	1 cut(s)	801
SpeI	ACTAGT	1 cut(s)	85
Sse9I	AATT	3 cut(s)	56, 297, 569
SsiI	CCGC	3 cut(s)	398, 540, 680
SspI	AATATT	1 cut(s)	557
SspMI	CTAG	2 cut(s)	86, 593
StyD4I	CCNGG	3 cut(s)	144, 243, 584
StyI	CCWWGG	1 cut(s)	712
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	803
TaqI	TCGA	3 cut(s)	325, 419, 503
TasI	AATT	3 cut(s)	56, 297, 569
TatI	WGTACW	1 cut(s)	471
TfiI	GAWTC	2 cut(s)	47, 454
Tru1I	TTAA	4 cut(s)	26, 123, 216, 732
Tru9I	TTAA	4 cut(s)	26, 123, 216, 732
TseI	GCWGC	1 cut(s)	542
TspDTI	ATGAA	4 cut(s)	17, 60, 467, 654
TspGWI	ACGGA	1 cut(s)	819
XapI	RAATTY	1 cut(s)	56
XceI	RCATGY	2 cut(s)	387, 635
XcmI	CCANNNNNNNNNTGG	2 cut(s)	659, 697
XmiI	GTMKAC	1 cut(s)	686
XspI	CTAG	2 cut(s)	86, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.