Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0009641

Physical Location & Seq

Genomic Coordinates Reverse (-)

79249637 .. 79251693

Gene Structure 2057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G045320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGACCCAAATCAAACCAAGAATTAAGCATGCATCCAAAAGTATCTGGAGATCAGTTACGAGGAAACCTCCAAAACACTACAAAATGAGCATAAAGTCGTTCTCAAGGCTACAATCAGAGGAAAAGTACGAATCGGGTGAGTTTGAGGTCGGAGGATACAAGTGGAAACTGGTACTCTTCCCCAATGGAAACAAAAACCGTGATGTGAAAGATCACATCTCTCTCTACTTGGAAATGGGTGGAGACAAAGCAATAGAACCCGGGAAGATTGTAACAGTTGATTACAAGTTGTTTTTGCTTAATCGGCACAAGGGGAAAGAATCGTACCTGGTTCTTGAAGATTCCAATAAGAGAGAGAAAAAGTACTGTATTTATCGGACAATTGTTGGTGGTTTGGGTGGTTTTGATCGATTCATCCCTCTTCAAGATTTTAGTGATGCATCAAATGGTTATCTCATTGATGACAGATGTGAGTTCGGAGCAGAGGTCTTTGTTTCTGAAACGACAAGAAAAGGCAAAGGAGAGTGTGTATTCATGAGTCTCAACACTGCTATATACAAGCATGTTTGGAAGGTTACCAACTTTTCGAAGTTAGGCGCTCAACCTTATTACTCACTACCATTCACCGCAAACGATCAAAAATATTGCTCATGGAGATTGGTTCTCTATCCCAAGGGACTTCTCACTGGAAAGGATAGTCATCTTTCTCTTCTTTTGTATTTGGATGAACCACATAAGCTTCCTCCTGGATCAAAAATACTTGCGGAATTTACTCTACGCATTTTGGATCAAATCCATGGGAAACATCGTTCTGGTAAAGTTAATGCCTGCTGGTTCATTGCCCAACCCACCAACTGTGCTTGTGGTTTCGACCAATTGATTACACAAGAAAAAAACGCAAGGTTTTCAGTGGATGATACTTGCATAATTGAGGTCGAAATTACTATCCAAGGACTTTCTATGCCAAGAATTTCTACACGCCCTTGGCCATGGAATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

333

Amino Acids

38.3

Weight (kDa)

9.28

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	26 - 163	2.6e-27	MATH domain
MATH	PF00917	31 - 164	3.2e-06	MATH domain
MATH_2	PF22486	187 - 314	1.1e-22	MATH domain
MATH	PF00917	192 - 316	3.4e-06	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05490 FvH4_2g27890 FvH4_4g21292
rosa_chinensis	RchiOBHm_Chr4g0426991 RchiOBHm_Chr5g0074421
rosa_laevigata	RLG00000007268 RLG00000036474
rosa_multiflora	Rmu_sc0000573.1_g000005 Rmu_sc0000953.1_g000017
rosa_roxburghii	Rroxscaffold_1G00007120 Rroxscaffold_5G00368880
rosa_rugosa	Rorug04G0215400 Rorug05G0431500
rosa_samantha	Rh4AG271000 Rh4BG277200 Rh4CG291900 Rh4DG274400 Rh5AG488800 Rh5BG509500 Rh5CG533300
rosa_wichuraiana	Rw4G023520 Rw5G045320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	627, 764
AclWI	GGATC	2 cut(s)	757, 795
AcoI	YGGCCR	1 cut(s)	986
AcsI	RAATTY	3 cut(s)	767, 969, 994
AfaI	GTAC	4 cut(s)	128, 174, 326, 365
AgsI	TTSAA	2 cut(s)	338, 425
AjnI	CCWGG	2 cut(s)	327, 745
AloI	GAACNNNNNNTCC	2 cut(s)	793, 825
AluBI	AGCT	1 cut(s)	739
AluI	AGCT	1 cut(s)	739
Alw26I	GTCTC	2 cut(s)	237, 545
AlwI	GGATC	2 cut(s)	757, 795
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	1 cut(s)	986
ApoI	RAATTY	3 cut(s)	767, 969, 994
AspLEI	GCGC	1 cut(s)	599
AsuC2I	CCSGG	2 cut(s)	261, 262
AsuHPI	GGTGA	2 cut(s)	149, 616
AsuII	TTCGAA	1 cut(s)	587
AvaI	CYCGRG	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	988
BciT130I	CCWGG	2 cut(s)	329, 747
BciVI	GTATCC	1 cut(s)	149
BcnI	CCSGG	2 cut(s)	261, 262
BcoDI	GTCTC	2 cut(s)	237, 545
BfoI	RGCGCY	1 cut(s)	600
BfuI	GTATCC	1 cut(s)	149
BmcAI	AGTACT	1 cut(s)	365
Bme1390I	CCNGG	4 cut(s)	261, 262, 329, 747
BmeT110I	CYCGRG	1 cut(s)	260
BmrFI	CCNGG	4 cut(s)	261, 262, 329, 747
BmsI	GCATC	3 cut(s)	41, 427, 449
BplI	GAGNNNNNCTC	2 cut(s)	52, 84
BpmI	CTGGAG	1 cut(s)	67
Bpu14I	TTCGAA	1 cut(s)	587
BpuEI	CTTGAG	1 cut(s)	88
BpuMI	CCSGG	2 cut(s)	261, 262
Bsa29I	ATCGAT	1 cut(s)	409
BsaBI	GATNNNNATC	1 cut(s)	699
BsaJI	CCNNGG	6 cut(s)	260, 672, 796, 949, 983, 989
BsaXI	ACNNNNNCTCC	4 cut(s)	471, 501, 513, 543
Bse1I	ACTGG	2 cut(s)	174, 691
Bse3DI	GCAATG	1 cut(s)	837
Bse8I	GATNNNNATC	1 cut(s)	699
BseBI	CCWGG	2 cut(s)	329, 747
BseCI	ATCGAT	1 cut(s)	409
BseDI	CCNNGG	6 cut(s)	260, 672, 796, 949, 983, 989
BseGI	GGATG	4 cut(s)	32, 414, 730, 919
BseJI	GATNNNNATC	1 cut(s)	699
BseMI	GCAATG	1 cut(s)	837
BseNI	ACTGG	2 cut(s)	174, 691
BshFI	GGCC	1 cut(s)	988
BshVI	ATCGAT	1 cut(s)	409
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	690
BsmAI	GTCTC	2 cut(s)	237, 545
BsmFI	GGGAC	1 cut(s)	690
BsnI	GGCC	1 cut(s)	988
BsoBI	CYCGRG	1 cut(s)	260
Bsp119I	TTCGAA	1 cut(s)	587
Bsp143I	GATC	6 cut(s)	50, 211, 406, 634, 749, 787
Bsp19I	CCATGG	2 cut(s)	796, 989
BspACI	CCGC	2 cut(s)	627, 764
BspANI	GGCC	1 cut(s)	988
BspDI	ATCGAT	1 cut(s)	409
BspHI	TCATGA	1 cut(s)	534
BspPI	GGATC	2 cut(s)	757, 795
BspT104I	TTCGAA	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	837
BsrI	ACTGG	2 cut(s)	174, 691
BssECI	CCNNGG	6 cut(s)	260, 672, 796, 949, 983, 989
BssMI	GATC	6 cut(s)	50, 211, 406, 634, 749, 787
BssT1I	CCWWGG	5 cut(s)	672, 796, 949, 983, 989
Bst2UI	CCWGG	2 cut(s)	329, 747
Bst4CI	ACNGT	4 cut(s)	200, 277, 368, 857
Bst6I	CTCTTC	3 cut(s)	182, 426, 714
BstBI	TTCGAA	1 cut(s)	587
BstC8I	GCNNGC	2 cut(s)	30, 829
BstDSI	CCRYGG	2 cut(s)	796, 989
BstEII	GGTNACC	1 cut(s)	574
BstF5I	GGATG	4 cut(s)	32, 414, 730, 919
BstH2I	RGCGCY	1 cut(s)	600
BstHHI	GCGC	1 cut(s)	599
BstKTI	GATC	6 cut(s)	53, 214, 409, 637, 752, 790
BstMAI	GTCTC	2 cut(s)	237, 545
BstMBI	GATC	6 cut(s)	50, 211, 406, 634, 749, 787
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstNI	CCWGG	2 cut(s)	329, 747
BstNSI	RCATGY	2 cut(s)	32, 566
BstPI	GGTNACC	1 cut(s)	574
BstSCI	CCNGG	4 cut(s)	259, 260, 327, 745
Bsu15I	ATCGAT	1 cut(s)	409
BsuI	GTATCC	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	988
BsuTUI	ATCGAT	1 cut(s)	409
BtgI	CCRYGG	2 cut(s)	796, 989
BtsCI	GGATG	4 cut(s)	32, 414, 730, 919
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	3 cut(s)	546, 684, 915
Cac8I	GCNNGC	2 cut(s)	30, 829
CciI	TCATGA	1 cut(s)	534
CfoI	GCGC	1 cut(s)	599
Cfr9I	CCCGGG	1 cut(s)	260
ClaI	ATCGAT	1 cut(s)	409
CsiI	ACCWGGT	1 cut(s)	327
Csp6I	GTAC	4 cut(s)	127, 173, 325, 364
CviAII	CATG	6 cut(s)	29, 535, 563, 651, 797, 990
CviJI	RGCY	3 cut(s)	109, 739, 988
CviKI_1	RGCY	3 cut(s)	109, 739, 988
CviQI	GTAC	4 cut(s)	127, 173, 325, 364
DpnI	GATC	6 cut(s)	52, 213, 408, 636, 751, 789
DpnII	GATC	6 cut(s)	50, 211, 406, 634, 749, 787
EaeI	YGGCCR	1 cut(s)	986
Eam1104I	CTCTTC	3 cut(s)	182, 426, 714
EarI	CTCTTC	3 cut(s)	182, 426, 714
Eco130I	CCWWGG	5 cut(s)	672, 796, 949, 983, 989
Eco88I	CYCGRG	1 cut(s)	260
Eco91I	GGTNACC	1 cut(s)	574
EcoO65I	GGTNACC	1 cut(s)	574
EcoRII	CCWGG	2 cut(s)	327, 745
EcoT14I	CCWWGG	5 cut(s)	672, 796, 949, 983, 989
EcoT22I	ATGCAT	2 cut(s)	34, 442
ErhI	CCWWGG	5 cut(s)	672, 796, 949, 983, 989
FaeI	CATG	6 cut(s)	32, 538, 566, 654, 800, 993
FaqI	GGGAC	1 cut(s)	690
FatI	CATG	6 cut(s)	28, 534, 562, 650, 796, 989
FokI	GGATG	4 cut(s)	19, 401, 737, 926
GlaI	GCGC	1 cut(s)	598
GsuI	CTGGAG	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	600
HaeIII	GGCC	1 cut(s)	988
HapII	CCGG	1 cut(s)	261
HhaI	GCGC	1 cut(s)	599
Hin1II	CATG	6 cut(s)	32, 538, 566, 654, 800, 993
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HindIII	AAGCTT	1 cut(s)	737
HinfI	GANTC	5 cut(s)	131, 320, 341, 411, 538
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	2 cut(s)	149, 616
Hpy188I	TCNGA	5 cut(s)	118, 152, 378, 479, 499
Hpy188III	TCNNGA	4 cut(s)	46, 335, 425, 535
HpyAV	CCTTC	1 cut(s)	565
HpyCH4III	ACNGT	4 cut(s)	200, 277, 368, 857
HpyCH4V	TGCA	3 cut(s)	32, 440, 924
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
Hsp92II	CATG	6 cut(s)	32, 538, 566, 654, 800, 993
HspAI	GCGC	1 cut(s)	597
Kzo9I	GATC	6 cut(s)	50, 211, 406, 634, 749, 787
LmnI	GCTCC	1 cut(s)	479
LweI	GCATC	3 cut(s)	41, 427, 449
MabI	ACCWGGT	1 cut(s)	327
MaeIII	GTNAC	3 cut(s)	55, 271, 574
MalI	GATC	6 cut(s)	52, 213, 408, 636, 751, 789
MboI	GATC	6 cut(s)	50, 211, 406, 634, 749, 787
MboII	GAAGA	5 cut(s)	169, 277, 350, 413, 701
MfeI	CAATTG	2 cut(s)	381, 875
MlsI	TGGCCA	1 cut(s)	988
MluCI	AATT	8 cut(s)	21, 381, 767, 875, 927, 939, 969, 994
MluNI	TGGCCA	1 cut(s)	988
MlyI	GAGTC	1 cut(s)	547
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	9 cut(s)	54, 78, 112, 139, 146, 429, 478, 753, 925
Mox20I	TGGCCA	1 cut(s)	988
Mph1103I	ATGCAT	2 cut(s)	34, 442
MscI	TGGCCA	1 cut(s)	988
MseI	TTAA	4 cut(s)	24, 300, 822, 1000
Msp20I	TGGCCA	1 cut(s)	988
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	4 cut(s)	261, 262, 329, 747
MunI	CAATTG	2 cut(s)	381, 875
MvaI	CCWGG	2 cut(s)	329, 747
MwoI	GCNNNNNNNGC	1 cut(s)	304
NciI	CCSGG	2 cut(s)	261, 262
NcoI	CCATGG	2 cut(s)	796, 989
NdeII	GATC	6 cut(s)	50, 211, 406, 634, 749, 787
NlaIII	CATG	6 cut(s)	32, 538, 566, 654, 800, 993
NsiI	ATGCAT	2 cut(s)	34, 442
NspI	RCATGY	2 cut(s)	32, 566
NspV	TTCGAA	1 cut(s)	587
PaeI	GCATGC	1 cut(s)	32
PagI	TCATGA	1 cut(s)	534
PfeI	GAWTC	4 cut(s)	131, 320, 341, 411
PfoI	TCCNGGA	1 cut(s)	745
PleI	GAGTC	1 cut(s)	546
PpsI	GAGTC	1 cut(s)	546
Psp6I	CCWGG	2 cut(s)	327, 745
PspEI	GGTNACC	1 cut(s)	574
PspGI	CCWGG	2 cut(s)	327, 745
RsaI	GTAC	4 cut(s)	128, 174, 326, 365
RsaNI	GTAC	4 cut(s)	127, 173, 325, 364
SaqAI	TTAA	4 cut(s)	24, 300, 822, 1000
Sau3AI	GATC	6 cut(s)	50, 211, 406, 634, 749, 787
ScaI	AGTACT	1 cut(s)	365
SchI	GAGTC	1 cut(s)	547
ScrFI	CCNGG	4 cut(s)	261, 262, 329, 747
SetI	ASST	9 cut(s)	70, 150, 330, 489, 576, 607, 741, 905, 936
SexAI	ACCWGGT	1 cut(s)	327
SfaNI	GCATC	3 cut(s)	41, 427, 449
SfuI	TTCGAA	1 cut(s)	587
SmaI	CCCGGG	1 cut(s)	262
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
SphI	GCATGC	1 cut(s)	32
Sse9I	AATT	8 cut(s)	21, 381, 767, 875, 927, 939, 969, 994
SsiI	CCGC	2 cut(s)	627, 764
SspI	AATATT	1 cut(s)	644
StyD4I	CCNGG	4 cut(s)	259, 260, 327, 745
StyI	CCWWGG	5 cut(s)	672, 796, 949, 983, 989
TaaI	ACNGT	4 cut(s)	200, 277, 368, 857
TaqI	TCGA	4 cut(s)	409, 587, 870, 936
TasI	AATT	8 cut(s)	21, 381, 767, 875, 927, 939, 969, 994
TatI	WGTACW	1 cut(s)	363
TfiI	GAWTC	4 cut(s)	131, 320, 341, 411
Tru1I	TTAA	4 cut(s)	24, 300, 822, 1000
Tru9I	TTAA	4 cut(s)	24, 300, 822, 1000
TscAI	CASTG	3 cut(s)	553, 691, 915
TspDTI	ATGAA	4 cut(s)	403, 523, 741, 826
TspMI	CCCGGG	1 cut(s)	260
TspRI	CASTG	3 cut(s)	553, 691, 915
XapI	RAATTY	3 cut(s)	767, 969, 994
XceI	RCATGY	2 cut(s)	32, 566
XmaI	CCCGGG	1 cut(s)	260
ZrmI	AGTACT	1 cut(s)	365
Zsp2I	ATGCAT	2 cut(s)	34, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.