Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000953.1

Orthogroup ID

OG0009641

Physical Location & Seq

Genomic Coordinates Forward (+)

85491 .. 87610

Gene Structure 2120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000953.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atggctggtcttgacatcgaccgtaatggcctggtattgagatcagtttcaaagaaacctcctaaagactacacgatgaaaatagtgtcgttctcatctttaaaatcagaggacagatatgaatcaggggaatttgagattgaaggatacaaatggaaattggtgctctatcccaggggtctaggcataggaaaaggtagtcatctttctgtttttctgcatgtatatgaaccggaaaaccagcttcctattggatctaagatacttgcggagtataccatacgcattatggatcaaatccatggcaagcatcgttctattaaaggtaaaaagtggttcagtgccccgttttggagttggggtcactatcagttcattacacaagaagccaacgcggcgtgccttaagaaagatagttgtatattggaggtcgaaatctgtatcttaggactttccattcctggaatttctacgacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

159

Amino Acids

18.01

Weight (kDa)

8.91

Isoelectric Point (pI)

34.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05490 FvH4_2g27890 FvH4_4g21292
rosa_chinensis	RchiOBHm_Chr4g0426991 RchiOBHm_Chr5g0074421
rosa_laevigata	RLG00000007268 RLG00000036474
rosa_multiflora	Rmu_sc0000573.1_g000005 Rmu_sc0000953.1_g000017
rosa_roxburghii	Rroxscaffold_1G00007120 Rroxscaffold_5G00368880
rosa_rugosa	Rorug04G0215400 Rorug05G0431500
rosa_samantha	Rh4AG271000 Rh4BG277200 Rh4CG291900 Rh4DG274400 Rh5AG488800 Rh5BG509500 Rh5CG533300
rosa_wichuraiana	Rw4G023520 Rw5G045320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	275
AccII	CGCG	1 cut(s)	395
AciI	CCGC	2 cut(s)	269, 395
AclWI	GGATC	2 cut(s)	262, 300
AcsI	RAATTY	2 cut(s)	131, 465
AfiI	CCNNNNNNNGG	1 cut(s)	351
AflII	CTTAAG	1 cut(s)	404
AgsI	TTSAA	2 cut(s)	51, 143
AjnI	CCWGG	3 cut(s)	30, 173, 460
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
Alw21I	GWGCWC	1 cut(s)	168
AlwI	GGATC	2 cut(s)	262, 300
AoxI	GGCC	1 cut(s)	28
ApoI	RAATTY	2 cut(s)	131, 465
BaeGI	GKGCMC	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	168
BciT130I	CCWGG	3 cut(s)	32, 175, 462
BciVI	GTATCC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	182
BfrI	CTTAAG	1 cut(s)	404
BfuI	GTATCC	1 cut(s)	140
BglI	GCCNNNNNGGC	1 cut(s)	395
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	3 cut(s)	32, 175, 462
BmrFI	CCNGG	3 cut(s)	32, 175, 462
BmsI	GCATC	1 cut(s)	319
BsaBI	GATNNNNATC	1 cut(s)	121
BsaJI	CCNNGG	3 cut(s)	173, 174, 301
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bsc4I	CCNNNNNNNGG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	121
BseBI	CCWGG	3 cut(s)	32, 175, 462
BseDI	CCNNGG	3 cut(s)	173, 174, 301
BseJI	GATNNNNATC	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	351
BseSI	GKGCMC	1 cut(s)	346
Bsh1236I	CGCG	1 cut(s)	395
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	351
BsnI	GGCC	1 cut(s)	30
Bsp1286I	GDGCHC	2 cut(s)	168, 346
Bsp143I	GATC	3 cut(s)	41, 254, 292
Bsp19I	CCATGG	1 cut(s)	301
BspACI	CCGC	2 cut(s)	269, 395
BspANI	GGCC	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	395
BspPI	GGATC	2 cut(s)	262, 300
BspTI	CTTAAG	1 cut(s)	404
BssECI	CCNNGG	3 cut(s)	173, 174, 301
BssMI	GATC	3 cut(s)	41, 254, 292
BssNAI	GTATAC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	301
Bst1107I	GTATAC	1 cut(s)	276
Bst2UI	CCWGG	3 cut(s)	32, 175, 462
Bst4CI	ACNGT	1 cut(s)	23
BstAFI	CTTAAG	1 cut(s)	404
BstC8I	GCNNGC	2 cut(s)	308, 400
BstDEI	CTNAG	2 cut(s)	258, 445
BstDSI	CCRYGG	1 cut(s)	301
BstFNI	CGCG	1 cut(s)	395
BstKTI	GATC	3 cut(s)	44, 257, 295
BstMBI	GATC	3 cut(s)	41, 254, 292
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstNI	CCWGG	3 cut(s)	32, 175, 462
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	3 cut(s)	30, 173, 460
BstSLI	GKGCMC	1 cut(s)	346
BstUI	CGCG	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	254
BstZ17I	GTATAC	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	30
BtgI	CCRYGG	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	346
Cac8I	GCNNGC	2 cut(s)	308, 400
CviAII	CATG	2 cut(s)	221, 302
CviJI	RGCY	4 cut(s)	5, 30, 244, 389
CviKI_1	RGCY	4 cut(s)	5, 30, 244, 389
DdeI	CTNAG	2 cut(s)	258, 445
DpnI	GATC	3 cut(s)	43, 256, 294
DpnII	GATC	3 cut(s)	41, 254, 292
DraI	TTTAAA	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	301
EcoRII	CCWGG	3 cut(s)	30, 173, 460
EcoT14I	CCWWGG	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	2 cut(s)	224, 305
FatI	CATG	2 cut(s)	220, 301
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	1 cut(s)	396
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	30
HapII	CCGG	1 cut(s)	233
Hin1II	CATG	2 cut(s)	224, 305
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	1 cut(s)	276
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4V	TGCA	1 cut(s)	220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	2 cut(s)	258, 445
Hsp92II	CATG	2 cut(s)	224, 305
Kzo9I	GATC	3 cut(s)	41, 254, 292
LpnPI	CCDG	9 cut(s)	17, 44, 111, 160, 187, 246, 254, 447, 474
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	3 cut(s)	43, 256, 294
MboI	GATC	3 cut(s)	41, 254, 292
MflI	RGATCY	1 cut(s)	254
MhlI	GDGCHC	2 cut(s)	168, 346
MluCI	AATT	3 cut(s)	131, 158, 465
MnlI	CCTC	3 cut(s)	69, 103, 421
MseI	TTAA	3 cut(s)	101, 321, 405
MslI	CAYNNNNRTG	1 cut(s)	225
MspCI	CTTAAG	1 cut(s)	404
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	3 cut(s)	32, 175, 462
MvaI	CCWGG	3 cut(s)	32, 175, 462
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	395
NcoI	CCATGG	1 cut(s)	301
NdeII	GATC	3 cut(s)	41, 254, 292
NlaIII	CATG	2 cut(s)	224, 305
NmuCI	GTSAC	1 cut(s)	362
NspI	RCATGY	1 cut(s)	224
PasI	CCCWGGG	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	122
PfoI	TCCNGGA	1 cut(s)	460
PkrI	GCNGC	1 cut(s)	397
Psp6I	CCWGG	3 cut(s)	30, 173, 460
PspGI	CCWGG	3 cut(s)	30, 173, 460
PsuI	RGATCY	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	3 cut(s)	101, 321, 405
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	3 cut(s)	41, 254, 292
ScrFI	CCNGG	3 cut(s)	32, 175, 462
SduI	GDGCHC	2 cut(s)	168, 346
SetI	ASST	5 cut(s)	61, 199, 246, 328, 432
SfaNI	GCATC	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	3 cut(s)	131, 158, 465
SsiI	CCGC	2 cut(s)	269, 395
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	3 cut(s)	30, 173, 460
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	23
TaqI	TCGA	2 cut(s)	18, 432
TasI	AATT	3 cut(s)	131, 158, 465
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	3 cut(s)	101, 321, 405
Tru9I	TTAA	3 cut(s)	101, 321, 405
TscAI	CASTG	1 cut(s)	346
TseFI	GTSAC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	4 cut(s)	92, 135, 243, 364
TspRI	CASTG	1 cut(s)	346
Vha464I	CTTAAG	1 cut(s)	404
XapI	RAATTY	2 cut(s)	131, 465
XceI	RCATGY	1 cut(s)	224
XcmI	CCANNNNNNNNNTGG	2 cut(s)	248, 286
XmiI	GTMKAC	1 cut(s)	275
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.