Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0009641

Physical Location & Seq

Genomic Coordinates Forward (+)

49102195 .. 49104318

Gene Structure 2124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G023520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCTGGTCTTGACATCGACCGTAATGGCCTGGTATTGAGATCAGTTTCAAAGAAACCTCCTAAAGACTACACGATGAAAATAGTGTCGTTCTCATCTTTAAAATCAGAGGACAGATATGAATCAGGGGAATTTGAGATTGAAGGATACAAATGGAAACTAGTGCTCTTCCCGAGTGGAAACAAGAAGCATAATGTTAATGACCACATCTCTCTCTACCTGGAAATGGGTGGACAAAAAGCAATAGAGACGGGGAGTATTGTAACGGTTGACTACAAGTTTTTTTTGCTTAATCGGCAAAAGGAGAAGAAGACCTACCTGGTTCTTGAAGATGCCAATAAAAAGGAGAAGAAGTATTGTTTTTATAGGACAATAGTTGGTGGTTTGGCTGGATTTGATCGATTTATCTCTATTGAAGATTTTACTGATGCCTTGAATGGTTATCTCATTGACGATACATGTGAGTTTGGAGCGGATGTATTTGTATCTAAATCGAGAAGAAAAGGCAAAGGAGAGCGTGTTTCAATGAATCTCAATACCATTATGTACAAACACACTTGGAAAGTTACTGATTTTTCAAAGTTAGACACACCATCTTGTTCACAACCATTCACCGCTGCAGATCAAAAATATTGCACATGGAAATTGGTGCTCTATCCCAGGGGTCTAGGCATAGGAAAAGGTAGTCATCTTTCTGTTTTTCTGCATGTATATGAACCGGAAAACCAGCTTCCTATTGGATCTAAGATACTTGCGGAGTATACCATACGCATTATGGATCAAATCCATGGCAAGCATCGTTCTATTAAAGGTAAAAAGTGGTTCAGTGCCCCGTTTTGGAGTTGGGGTCACTATCAGTTCATTACACAAGAAGCCAACGCGGCGTGCCTTAAGAAAGATAGTTGTATATTGGAGGTCGAAATCTGTATCTTAGGACTTTCCATTCCTGGAATTTCTACGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

321

Amino Acids

36.6

Weight (kDa)

9.0

Isoelectric Point (pI)

31.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	24 - 160	5.2e-26	MATH domain
MATH	PF00917	30 - 161	8.3e-07	MATH domain
MATH_2	PF22486	184 - 308	3.5e-22	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05490 FvH4_2g27890 FvH4_4g21292
rosa_chinensis	RchiOBHm_Chr4g0426991 RchiOBHm_Chr5g0074421
rosa_laevigata	RLG00000007268 RLG00000036474
rosa_multiflora	Rmu_sc0000573.1_g000005 Rmu_sc0000953.1_g000017
rosa_roxburghii	Rroxscaffold_1G00007120 Rroxscaffold_5G00368880
rosa_rugosa	Rorug04G0215400 Rorug05G0431500
rosa_samantha	Rh4AG271000 Rh4BG277200 Rh4CG291900 Rh4DG274400 Rh5AG488800 Rh5BG509500 Rh5CG533300
rosa_wichuraiana	Rw4G023520 Rw5G045320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	473
AccI	GTMKAC	1 cut(s)	761
AccII	CGCG	1 cut(s)	881
AciI	CCGC	4 cut(s)	473, 615, 755, 881
AclWI	GGATC	2 cut(s)	748, 786
AcsI	RAATTY	2 cut(s)	131, 951
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	2 cut(s)	226, 837
AflII	CTTAAG	1 cut(s)	890
AflIII	ACRYGT	1 cut(s)	458
AgsI	TTSAA	7 cut(s)	51, 143, 329, 416, 436, 525, 579
AhlI	ACTAGT	1 cut(s)	160
AjnI	CCWGG	5 cut(s)	30, 219, 318, 659, 946
AluBI	AGCT	1 cut(s)	730
AluI	AGCT	1 cut(s)	730
Alw21I	GWGCWC	2 cut(s)	168, 654
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	2 cut(s)	748, 786
Ama87I	CYCGRG	1 cut(s)	172
AoxI	GGCC	1 cut(s)	28
ApeKI	GCWGC	1 cut(s)	617
ApoI	RAATTY	2 cut(s)	131, 951
AsuHPI	GGTGA	1 cut(s)	604
AvaI	CYCGRG	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	832
BarI	GAAGNNNNNNTAC	2 cut(s)	299, 331
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	2 cut(s)	168, 654
BbvI	GCAGC	1 cut(s)	604
BccI	CCATC	1 cut(s)	601
BciT130I	CCWGG	5 cut(s)	32, 221, 320, 661, 948
BciVI	GTATCC	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	242
BcuI	ACTAGT	1 cut(s)	160
BfaI	CTAG	2 cut(s)	161, 668
BfmI	CTRYAG	1 cut(s)	618
BfrI	CTTAAG	1 cut(s)	890
BfuI	GTATCC	1 cut(s)	140
BglI	GCCNNNNNGGC	1 cut(s)	881
BisI	GCNGC	2 cut(s)	618, 882
BlsI	GCNGC	2 cut(s)	619, 883
Bme1390I	CCNGG	5 cut(s)	32, 221, 320, 661, 948
BmeT110I	CYCGRG	1 cut(s)	172
BmrFI	CCNGG	5 cut(s)	32, 221, 320, 661, 948
BmsI	GCATC	3 cut(s)	322, 418, 805
BpiI	GAAGAC	1 cut(s)	317
Bsa29I	ATCGAT	1 cut(s)	400
BsaBI	GATNNNNATC	1 cut(s)	121
BsaJI	CCNNGG	3 cut(s)	659, 660, 787
BsaWI	WCCGGW	1 cut(s)	718
BsaXI	ACNNNNNCTCC	8 cut(s)	338, 368, 462, 492, 504, 534, 832, 862
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 837
Bse8I	GATNNNNATC	1 cut(s)	121
BseBI	CCWGG	5 cut(s)	32, 221, 320, 661, 948
BseCI	ATCGAT	1 cut(s)	400
BseDI	CCNNGG	3 cut(s)	659, 660, 787
BseGI	GGATG	1 cut(s)	481
BseJI	GATNNNNATC	1 cut(s)	121
BseLI	CCNNNNNNNGG	2 cut(s)	226, 837
BseSI	GKGCMC	1 cut(s)	832
BseXI	GCAGC	1 cut(s)	604
Bsh1236I	CGCG	1 cut(s)	881
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	30
BshVI	ATCGAT	1 cut(s)	400
BsiEI	CGRYCG	1 cut(s)	22
BsiHKAI	GWGCWC	2 cut(s)	168, 654
BsiHKCI	CYCGRG	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	719
BslI	CCNNNNNNNGG	2 cut(s)	226, 837
BsmAI	GTCTC	1 cut(s)	242
BsmBI	CGTCTC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	30
BsoBI	CYCGRG	1 cut(s)	172
Bsp1286I	GDGCHC	3 cut(s)	168, 654, 832
Bsp1407I	TGTACA	1 cut(s)	546
Bsp143I	GATC	5 cut(s)	41, 397, 622, 740, 778
Bsp19I	CCATGG	1 cut(s)	787
BspACI	CCGC	4 cut(s)	473, 615, 755, 881
BspANI	GGCC	1 cut(s)	30
BspDI	ATCGAT	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	881
BspMAI	CTGCAG	1 cut(s)	622
BspPI	GGATC	2 cut(s)	748, 786
BspQI	GCTCTTC	1 cut(s)	173
BspTI	CTTAAG	1 cut(s)	890
BsrBI	CCGCTC	1 cut(s)	473
BsrGI	TGTACA	1 cut(s)	546
BssECI	CCNNGG	3 cut(s)	659, 660, 787
BssMI	GATC	5 cut(s)	41, 397, 622, 740, 778
BssNAI	GTATAC	1 cut(s)	762
BssT1I	CCWWGG	1 cut(s)	787
Bst1107I	GTATAC	1 cut(s)	762
Bst2UI	CCWGG	5 cut(s)	32, 221, 320, 661, 948
Bst4CI	ACNGT	2 cut(s)	23, 268
Bst6I	CTCTTC	1 cut(s)	173
BstAFI	CTTAAG	1 cut(s)	890
BstAUI	TGTACA	1 cut(s)	546
BstC8I	GCNNGC	2 cut(s)	794, 886
BstDEI	CTNAG	2 cut(s)	744, 931
BstDSI	CCRYGG	1 cut(s)	787
BstF5I	GGATG	1 cut(s)	481
BstFNI	CGCG	1 cut(s)	881
BstKTI	GATC	5 cut(s)	44, 400, 625, 743, 781
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	5 cut(s)	41, 397, 622, 740, 778
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	2 cut(s)	295, 881
BstNI	CCWGG	5 cut(s)	32, 221, 320, 661, 948
BstNSI	RCATGY	2 cut(s)	462, 710
BstSCI	CCNGG	5 cut(s)	30, 219, 318, 659, 946
BstSFI	CTRYAG	1 cut(s)	618
BstSLI	GKGCMC	1 cut(s)	832
BstUI	CGCG	1 cut(s)	881
BstV1I	GCAGC	1 cut(s)	604
BstV2I	GAAGAC	1 cut(s)	317
BstX2I	RGATCY	1 cut(s)	740
BstYI	RGATCY	1 cut(s)	740
BstZ17I	GTATAC	1 cut(s)	762
Bsu15I	ATCGAT	1 cut(s)	400
BsuI	GTATCC	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	30
BsuTUI	ATCGAT	1 cut(s)	400
BtgI	CCRYGG	1 cut(s)	787
BtsCI	GGATG	1 cut(s)	481
BtsIMutI	CAGTG	1 cut(s)	832
Cac8I	GCNNGC	2 cut(s)	794, 886
ClaI	ATCGAT	1 cut(s)	400
CsiI	ACCWGGT	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	4 cut(s)	459, 639, 707, 788
CviJI	RGCY	5 cut(s)	5, 30, 389, 730, 875
CviKI_1	RGCY	5 cut(s)	5, 30, 389, 730, 875
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	2 cut(s)	744, 931
DpnI	GATC	5 cut(s)	43, 399, 624, 742, 780
DpnII	GATC	5 cut(s)	41, 397, 622, 740, 778
DraI	TTTAAA	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	787
Eco88I	CYCGRG	1 cut(s)	172
EcoRII	CCWGG	5 cut(s)	30, 219, 318, 659, 946
EcoT14I	CCWWGG	1 cut(s)	787
ErhI	CCWWGG	1 cut(s)	787
Esp3I	CGTCTC	1 cut(s)	242
FaeI	CATG	4 cut(s)	462, 642, 710, 791
FatI	CATG	4 cut(s)	458, 638, 706, 787
FblI	GTMKAC	1 cut(s)	761
Fnu4HI	GCNGC	2 cut(s)	618, 882
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	2 cut(s)	618, 882
FspBI	CTAG	2 cut(s)	161, 668
GluI	GCNGC	2 cut(s)	618, 882
HaeIII	GGCC	1 cut(s)	30
HapII	CCGG	1 cut(s)	719
Hin1II	CATG	4 cut(s)	462, 642, 710, 791
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	2 cut(s)	122, 529
HpaII	CCGG	1 cut(s)	719
HphI	GGTGA	1 cut(s)	604
Hpy166II	GTNNAC	4 cut(s)	233, 271, 602, 762
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	4 cut(s)	11, 172, 326, 495
Hpy8I	GTNNAC	4 cut(s)	233, 271, 602, 762
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	2 cut(s)	23, 268
HpyCH4V	TGCA	3 cut(s)	620, 636, 706
HpyF10VI	GCNNNNNNNGC	2 cut(s)	295, 881
HpyF3I	CTNAG	2 cut(s)	744, 931
Hsp92II	CATG	4 cut(s)	462, 642, 710, 791
Kzo9I	GATC	5 cut(s)	41, 397, 622, 740, 778
LguI	GCTCTTC	1 cut(s)	173
LmnI	GCTCC	1 cut(s)	470
Lsp1109I	GCAGC	1 cut(s)	604
LweI	GCATC	3 cut(s)	322, 418, 805
MabI	ACCWGGT	1 cut(s)	318
MaeI	CTAG	2 cut(s)	161, 668
MaeIII	GTNAC	3 cut(s)	262, 565, 848
MalI	GATC	5 cut(s)	43, 399, 624, 742, 780
MbiI	CCGCTC	1 cut(s)	473
MboI	GATC	5 cut(s)	41, 397, 622, 740, 778
MboII	GAAGA	7 cut(s)	160, 319, 322, 341, 361, 428, 510
MflI	RGATCY	1 cut(s)	740
MhlI	GDGCHC	3 cut(s)	168, 654, 832
MluCI	AATT	3 cut(s)	131, 644, 951
MnlI	CCTC	3 cut(s)	69, 103, 907
MseI	TTAA	5 cut(s)	101, 198, 291, 807, 891
MslI	CAYNNNNRTG	1 cut(s)	711
MspA1I	CMGCKG	1 cut(s)	617
MspCI	CTTAAG	1 cut(s)	890
MspI	CCGG	1 cut(s)	719
MspR9I	CCNGG	5 cut(s)	32, 221, 320, 661, 948
MvaI	CCWGG	5 cut(s)	32, 221, 320, 661, 948
MvnI	CGCG	1 cut(s)	881
MwoI	GCNNNNNNNGC	2 cut(s)	295, 881
NcoI	CCATGG	1 cut(s)	787
NdeII	GATC	5 cut(s)	41, 397, 622, 740, 778
NlaIII	CATG	4 cut(s)	462, 642, 710, 791
NmuCI	GTSAC	1 cut(s)	848
NspI	RCATGY	2 cut(s)	462, 710
PasI	CCCWGGG	1 cut(s)	660
PciI	ACATGT	1 cut(s)	458
PciSI	GCTCTTC	1 cut(s)	173
PfeI	GAWTC	2 cut(s)	122, 529
PfoI	TCCNGGA	1 cut(s)	946
PkrI	GCNGC	2 cut(s)	619, 883
PscI	ACATGT	1 cut(s)	458
Psp6I	CCWGG	5 cut(s)	30, 219, 318, 659, 946
PspGI	CCWGG	5 cut(s)	30, 219, 318, 659, 946
PstI	CTGCAG	1 cut(s)	622
PsuI	RGATCY	1 cut(s)	740
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
RseI	CAYNNNNRTG	1 cut(s)	711
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	5 cut(s)	101, 198, 291, 807, 891
SatI	GCNGC	2 cut(s)	618, 882
Sau3AI	GATC	5 cut(s)	41, 397, 622, 740, 778
ScrFI	CCNGG	5 cut(s)	32, 221, 320, 661, 948
SduI	GDGCHC	3 cut(s)	168, 654, 832
SetI	ASST	8 cut(s)	61, 222, 317, 321, 685, 732, 814, 918
SexAI	ACCWGGT	1 cut(s)	318
SfaNI	GCATC	3 cut(s)	322, 418, 805
SfcI	CTRYAG	1 cut(s)	618
SmiMI	CAYNNNNRTG	1 cut(s)	711
SmlI	CTYRAG	1 cut(s)	890
SmoI	CTYRAG	1 cut(s)	890
SpeI	ACTAGT	1 cut(s)	160
Sse9I	AATT	3 cut(s)	131, 644, 951
SsiI	CCGC	4 cut(s)	473, 615, 755, 881
SspI	AATATT	1 cut(s)	632
SspMI	CTAG	2 cut(s)	161, 668
StyD4I	CCNGG	5 cut(s)	30, 219, 318, 659, 946
StyI	CCWWGG	1 cut(s)	787
TaaI	ACNGT	2 cut(s)	23, 268
TaqI	TCGA	4 cut(s)	18, 400, 494, 918
TasI	AATT	3 cut(s)	131, 644, 951
TatI	WGTACW	1 cut(s)	546
TauI	GCSGC	1 cut(s)	884
TfiI	GAWTC	2 cut(s)	122, 529
Tru1I	TTAA	5 cut(s)	101, 198, 291, 807, 891
Tru9I	TTAA	5 cut(s)	101, 198, 291, 807, 891
TscAI	CASTG	1 cut(s)	832
TseFI	GTSAC	1 cut(s)	848
TseI	GCWGC	1 cut(s)	617
Tsp45I	GTSAC	1 cut(s)	848
TspDTI	ATGAA	5 cut(s)	92, 135, 542, 729, 850
TspRI	CASTG	1 cut(s)	832
Vha464I	CTTAAG	1 cut(s)	890
XapI	RAATTY	2 cut(s)	131, 951
XceI	RCATGY	2 cut(s)	462, 710
XcmI	CCANNNNNNNNNTGG	2 cut(s)	734, 772
XmiI	GTMKAC	1 cut(s)	761
XspI	CTAG	2 cut(s)	161, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.