FvH4_4g21292

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
24355674 .. 24363216
7543 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g21292.t1

Sequence Viewer

Length: 1575 bp
ATGAAAATAGCGTCGTTCTCTTCTCTAAAATCAGAGGATAGATATGAATCAGCGGAATTTGAGATTAAAGGATACAAATGGAAATTAGTGCTCTTCCCGAGTGGAAACAAGAAGCATAATGTTAAAGACCACATCTCTCTCTACCTGGAAATGGGTGGACAAAAAGCAACAGACTCGGGGAGTATGGTTACGGTTGATTACAAGTTTTATTTGCTTAATCGGCAAAAGGAGAAGAAGACCTACCTGGTTCTTGAAGATGCCAATAAAAGGGAGAAGAAGTATTGTTTTTATAGGACAATAGTTGGTGGTTTGGCTGGATTTGATCGATTTATCTCTCTTGAAGATTTTACTGATGCCTCCAATGGTTATCTCATTGATGATACTTGTGAGTTTGGTGCGGATGTCTTTGTATCCAAATCGAGAAGAAAAGGCAAAGGAGAGCTTGTTTCAATGAATCTCAATACCGTTATGAATAAACATACATGGAAGGTTACTGACTTTTCGAAGTTACAAACACCTTCCTGTTACTCACAACCATTCATTGCTGCAGATCAAAAATATTGTGCATGGAAATTGATCCTCTATCCCAGGGGCCTAGGCGTTGGAAAGGGTAGTCATCTTTCTGTGTTTTTGCATGTACATGAACCGGAAAATCAGCTTCCGATTGGTTCTAAGATACTTACAGAGTATACGATACGCATTCTGGATCAAATCCATGGCAAGCATCGTTCTATGAAAGGGGTTCTGAGATCATATTCAGATTCACCACCAAGTCATTACAGTCTGAAAGTAAATTCATATTCACTTATGACTGAATATTCAGTGGATGGATATGGAACAGAGGAATTCGAAGCTGGAGGTTACGAATGGAAACTGGTGATCTACCCAAGTGGAAACAAGAAAAGAAATGTGACCGACCACATCTCCCTCTACTTGGAATTAGCTGGAGAAGCTTCATTTCAGAGTGATTGTGAAGTATATGTTCATTTCAGATTCTTTTTACTTGATCAGAAAAAGAGCAACTACCTAGTTGTTGAAGATGCTTTGGCAAAGAAAATTTGCTTTCATCCGATGATGCTTTGCTCGCCCAGCTTTGATAAGCTTATGCCTCTTAAAGAATTTACTGATGCCTCGAATGGATATCTCATTGAGGACACCTTCGTGCTTGGAGCTGAGGTTTGGAAGGTGGAGAAATTTTCAAACTTGACTGATGGACGTTATAGGTCAACACCATTCAGGGCTGGAGACCAGCTATGGCGGATAGACATTTATCCCAAGAGATGTGAACAAGGAATTGGAACTGATCTTTCTATTTTCTTGACATTGGCTGATTGGAAACCGGTTCCTCCATTGTCCAAAATTTTTGTGGCGTTTACCTTGCGCATCGCAGATCAAAGCCATGCCGCCGAGCATCAGTCTTGGACAGGTAAACACTGTTTCACTGCCGAGTCACCGTCGTGGGGTTTTCAGTTCAGTAGTGTAAGCATTTTGGAGGGGAAAGGGCTTTTGATGAACGATACTTGCATTGTGGAGGCAGAGGTCACTGTCCATGGAGTTTCCAAAGTACTGTATTAA

Protein Analysis

525

Amino Acids

59.71

Weight (kDa)

7.9

Isoelectric Point (pI)

32.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 2 - 135 2e-25 MATH domain
MATH PF00917 4 - 136 2.4e-07 MATH domain
MATH_2 PF22486 159 - 243 3.7e-17 MATH domain
MATH_2 PF22486 259 - 393 4.4e-26 MATH domain
MATH_2 PF22486 393 - 514 2.6e-22 MATH domain
MATH PF00917 396 - 516 9.5e-09 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1382
AccI GTMKAC 1 cut(s) 689
AciI CCGC 4 cut(s) 53, 398, 1258, 1404
AclWI GGATC 2 cut(s) 571, 714
AcsI RAATTY 7 cut(s) 56, 793, 845, 1056, 1118, 1193, 1359
AfaI GTAC 2 cut(s) 639, 1566
AfiI CCNNNNNNNGG 4 cut(s) 151, 267, 934, 1460
AgeI ACCGGT 1 cut(s) 1339
AgsI TTSAA 5 cut(s) 254, 341, 450, 1037, 1200
AjnI CCWGG 3 cut(s) 144, 243, 587
AjuI GAANNNNNNNTTGG 2 cut(s) 1278, 1310
AleI CACNNNNGTG 2 cut(s) 1160, 1456
AluBI AGCT 9 cut(s) 442, 658, 854, 944, 953, 1092, 1102, 1172, 1252
AluI AGCT 9 cut(s) 442, 658, 854, 944, 953, 1092, 1102, 1172, 1252
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 1239
AlwI GGATC 2 cut(s) 571, 714
Ama87I CYCGRG 2 cut(s) 97, 175
AoxI GGCC 1 cut(s) 592
ApeKI GCWGC 1 cut(s) 545
ApoI RAATTY 7 cut(s) 56, 793, 845, 1056, 1118, 1193, 1359
AsiGI ACCGGT 1 cut(s) 1339
AspA2I CCTAGG 1 cut(s) 595
AspLEI GCGC 1 cut(s) 1383
AspS9I GGNCC 1 cut(s) 592
AsuHPI GGTGA 3 cut(s) 756, 889, 1443
AsuII TTCGAA 2 cut(s) 503, 849
AvaI CYCGRG 2 cut(s) 97, 175
AvrII CCTAGG 1 cut(s) 595
BarI GAAGNNNNNNTAC 2 cut(s) 224, 256
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 93
BbvCI CCTCAGC 1 cut(s) 1173
BbvI GCAGC 1 cut(s) 532
BccI CCATC 2 cut(s) 821, 1205
BcgI CGANNNNNNTGC 2 cut(s) 156, 190
BciT130I CCWGG 3 cut(s) 146, 245, 589
BciVI GTATCC 2 cut(s) 65, 421
BclI TGATCA 1 cut(s) 1006
BcoDI GTCTC 1 cut(s) 1239
BfaI CTAG 2 cut(s) 596, 1028
BfmI CTRYAG 1 cut(s) 546
BfuI GTATCC 2 cut(s) 65, 421
BisI GCNGC 2 cut(s) 546, 1404
BlnI CCTAGG 1 cut(s) 595
BlsI GCNGC 2 cut(s) 547, 1405
BmcAI AGTACT 1 cut(s) 1566
Bme1390I CCNGG 3 cut(s) 146, 245, 589
BmeT110I CYCGRG 2 cut(s) 97, 175
BmgT120I GGNCC 1 cut(s) 592
BmiI GGNNCC 2 cut(s) 593, 1344
BmrFI CCNGG 3 cut(s) 146, 245, 589
BmsI GCATC 8 cut(s) 247, 343, 733, 1030, 1065, 1117, 1392, 1420
BpiI GAAGAC 1 cut(s) 242
BpmI CTGGAG 3 cut(s) 876, 966, 1263
Bpu10I CCTNAGC 1 cut(s) 1173
Bpu14I TTCGAA 2 cut(s) 503, 849
Bsa29I ATCGAT 1 cut(s) 325
BsaBI GATNNNNATC 1 cut(s) 46
BsaI GGTCTC 1 cut(s) 1239
BsaJI CCNNGG 5 cut(s) 587, 588, 595, 715, 1549
BsaWI WCCGGW 2 cut(s) 646, 1339
BsaXI ACNNNNNCTCC 8 cut(s) 263, 293, 429, 459, 908, 938, 1161, 1191
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 267, 934, 1460
Bse118I RCCGGY 1 cut(s) 1339
Bse1I ACTGG 1 cut(s) 879
Bse3DI GCAATG 1 cut(s) 540
Bse8I GATNNNNATC 1 cut(s) 46
BseBI CCWGG 3 cut(s) 146, 245, 589
BseCI ATCGAT 1 cut(s) 325
BseDI CCNNGG 5 cut(s) 587, 588, 595, 715, 1549
BseGI GGATG 3 cut(s) 406, 832, 1066
BseJI GATNNNNATC 1 cut(s) 46
BseLI CCNNNNNNNGG 4 cut(s) 151, 267, 934, 1460
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 2 cut(s) 737, 1164
BseNI ACTGG 1 cut(s) 879
BseXI GCAGC 1 cut(s) 532
BseYI CCCAGC 1 cut(s) 1088
BshFI GGCC 1 cut(s) 594
BshTI ACCGGT 1 cut(s) 1339
BshVI ATCGAT 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 93
BsiHKCI CYCGRG 2 cut(s) 97, 175
BsiSI CCGG 2 cut(s) 647, 1340
BslI CCNNNNNNNGG 4 cut(s) 151, 267, 934, 1460
BsmAI GTCTC 1 cut(s) 1239
BsmI GAATGC 1 cut(s) 699
BsnI GGCC 1 cut(s) 594
Bso31I GGTCTC 1 cut(s) 1239
BsoBI CYCGRG 2 cut(s) 97, 175
Bsp119I TTCGAA 2 cut(s) 503, 849
Bsp1286I GDGCHC 1 cut(s) 93
Bsp1407I TGTACA 1 cut(s) 637
Bsp143I GATC 9 cut(s) 322, 550, 576, 706, 749, 879, 1006, 1303, 1390
Bsp19I CCATGG 2 cut(s) 715, 1549
BspACI CCGC 4 cut(s) 53, 398, 1258, 1404
BspANI GGCC 1 cut(s) 594
BspCNI CTCAG 2 cut(s) 738, 1165
BspDI ATCGAT 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 593, 1344
BspMAI CTGCAG 1 cut(s) 550
BspPI GGATC 2 cut(s) 571, 714
BspQI GCTCTTC 1 cut(s) 98
BspT104I TTCGAA 2 cut(s) 503, 849
BspTNI GGTCTC 1 cut(s) 1239
BsrDI GCAATG 1 cut(s) 540
BsrFI RCCGGY 1 cut(s) 1339
BsrGI TGTACA 1 cut(s) 637
BsrI ACTGG 1 cut(s) 879
BssAI RCCGGY 1 cut(s) 1339
BssECI CCNNGG 5 cut(s) 587, 588, 595, 715, 1549
BssMI GATC 9 cut(s) 322, 550, 576, 706, 749, 879, 1006, 1303, 1390
BssNAI GTATAC 1 cut(s) 690
BssT1I CCWWGG 3 cut(s) 595, 715, 1549
Bst1107I GTATAC 1 cut(s) 690
Bst2UI CCWGG 3 cut(s) 146, 245, 589
Bst4CI ACNGT 7 cut(s) 193, 466, 782, 1436, 1455, 1546, 1569
Bst6I CTCTTC 2 cut(s) 25, 98
BstAUI TGTACA 1 cut(s) 637
BstBI TTCGAA 2 cut(s) 503, 849
BstC8I GCNNGC 2 cut(s) 722, 1085
BstDEI CTNAG 3 cut(s) 672, 746, 1173
BstDSI CCRYGG 2 cut(s) 715, 1549
BstF5I GGATG 3 cut(s) 406, 832, 1066
BstHHI GCGC 1 cut(s) 1383
BstKTI GATC 9 cut(s) 325, 553, 579, 709, 752, 882, 1009, 1306, 1393
BstMAI GTCTC 1 cut(s) 1239
BstMBI GATC 9 cut(s) 322, 550, 576, 706, 749, 879, 1006, 1303, 1390
BstMWI GCNNNNNNNGC 4 cut(s) 220, 950, 1084, 1089
BstNI CCWGG 3 cut(s) 146, 245, 589
BstNSI RCATGY 1 cut(s) 638
BstSCI CCNGG 3 cut(s) 144, 243, 587
BstSFI CTRYAG 1 cut(s) 546
BstV1I GCAGC 1 cut(s) 532
BstV2I GAAGAC 1 cut(s) 242
BstZ17I GTATAC 1 cut(s) 690
Bsu15I ATCGAT 1 cut(s) 325
BsuI GTATCC 2 cut(s) 65, 421
BsuRI GGCC 1 cut(s) 594
BsuTUI ATCGAT 1 cut(s) 325
BtgI CCRYGG 2 cut(s) 715, 1549
BtgZI GCGATG 1 cut(s) 1369
BtsCI GGATG 3 cut(s) 406, 832, 1066
BtsI GCAGTG 1 cut(s) 1440
BtsIMutI CAGTG 4 cut(s) 828, 1432, 1440, 1542
Cac8I GCNNGC 2 cut(s) 722, 1085
CfoI GCGC 1 cut(s) 1383
Cfr10I RCCGGY 1 cut(s) 1339
Cfr13I GGNCC 1 cut(s) 592
ClaI ATCGAT 1 cut(s) 325
CsiI ACCWGGT 1 cut(s) 243
Csp6I GTAC 2 cut(s) 638, 1565
CspAI ACCGGT 1 cut(s) 1339
CviAII CATG 7 cut(s) 483, 567, 635, 641, 716, 1400, 1550
CviQI GTAC 2 cut(s) 638, 1565
DdeI CTNAG 3 cut(s) 672, 746, 1173
DpnI GATC 9 cut(s) 324, 552, 578, 708, 751, 881, 1008, 1305, 1392
DpnII GATC 9 cut(s) 322, 550, 576, 706, 749, 879, 1006, 1303, 1390
Eam1104I CTCTTC 2 cut(s) 25, 98
EarI CTCTTC 2 cut(s) 25, 98
EciI GGCGGA 1 cut(s) 1273
Eco130I CCWWGG 3 cut(s) 595, 715, 1549
Eco31I GGTCTC 1 cut(s) 1239
Eco32I GATATC 1 cut(s) 1142
Eco88I CYCGRG 2 cut(s) 97, 175
EcoO109I RGGNCCY 1 cut(s) 592
EcoRI GAATTC 1 cut(s) 845
EcoRII CCWGG 3 cut(s) 144, 243, 587
EcoRV GATATC 1 cut(s) 1142
EcoT14I CCWWGG 3 cut(s) 595, 715, 1549
ErhI CCWWGG 3 cut(s) 595, 715, 1549
FaeI CATG 7 cut(s) 486, 570, 638, 644, 719, 1403, 1553
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FatI CATG 7 cut(s) 482, 566, 634, 640, 715, 1399, 1549
FbaI TGATCA 1 cut(s) 1006
FblI GTMKAC 1 cut(s) 689
Fnu4HI GCNGC 2 cut(s) 546, 1404
FokI GGATG 3 cut(s) 413, 839, 1053
Fsp4HI GCNGC 2 cut(s) 546, 1404
FspBI CTAG 2 cut(s) 596, 1028
FspI TGCGCA 1 cut(s) 1382
GlaI GCGC 1 cut(s) 1382
GluI GCNGC 2 cut(s) 546, 1404
GsaI CCCAGC 1 cut(s) 1092
GsuI CTGGAG 3 cut(s) 876, 966, 1263
HaeIII GGCC 1 cut(s) 594
HapII CCGG 2 cut(s) 647, 1340
HhaI GCGC 1 cut(s) 1383
Hin1II CATG 7 cut(s) 486, 570, 638, 644, 719, 1403, 1553
Hin6I GCGC 1 cut(s) 1381
HinP1I GCGC 1 cut(s) 1381
HincII GTYRAC 1 cut(s) 1227
HindII GTYRAC 1 cut(s) 1227
HindIII AAGCTT 2 cut(s) 951, 1100
HinfI GANTC 6 cut(s) 47, 173, 454, 761, 993, 1448
HpaII CCGG 2 cut(s) 647, 1340
HphI GGTGA 3 cut(s) 756, 889, 1443
Hpy166II GTNNAC 6 cut(s) 158, 690, 1227, 1286, 1374, 1430
Hpy188I TCNGA 9 cut(s) 34, 663, 747, 760, 786, 963, 992, 1011, 1071
Hpy188III TCNNGA 6 cut(s) 97, 251, 338, 420, 704, 1318
Hpy8I GTNNAC 6 cut(s) 158, 690, 1227, 1286, 1374, 1430
Hpy99I CGWCG 2 cut(s) 16, 1459
HpyAV CCTTC 4 cut(s) 481, 528, 1168, 1177
HpyCH4III ACNGT 7 cut(s) 193, 466, 782, 1436, 1455, 1546, 1569
HpyCH4IV ACGT 1 cut(s) 1216
HpyCH4V TGCA 4 cut(s) 548, 566, 634, 1524
HpyF10VI GCNNNNNNNGC 4 cut(s) 220, 950, 1084, 1089
HpyF3I CTNAG 3 cut(s) 672, 746, 1173
HpySE526I ACGT 1 cut(s) 1216
Hsp92II CATG 7 cut(s) 486, 570, 638, 644, 719, 1403, 1553
HspAI GCGC 1 cut(s) 1381
Ksp22I TGATCA 1 cut(s) 1006
Kzo9I GATC 9 cut(s) 322, 550, 576, 706, 749, 879, 1006, 1303, 1390
LguI GCTCTTC 1 cut(s) 98
LmnI GCTCC 1 cut(s) 1169
Lsp1109I GCAGC 1 cut(s) 532
LweI GCATC 8 cut(s) 247, 343, 733, 1030, 1065, 1117, 1392, 1420
MabI ACCWGGT 1 cut(s) 243
MaeI CTAG 2 cut(s) 596, 1028
MaeII ACGT 1 cut(s) 1216
MaeIII GTNAC 8 cut(s) 187, 490, 507, 524, 860, 910, 1449, 1540
MalI GATC 9 cut(s) 324, 552, 578, 708, 751, 881, 1008, 1305, 1392
MboI GATC 9 cut(s) 322, 550, 576, 706, 749, 879, 1006, 1303, 1390
MboII GAAGA 9 cut(s) 12, 85, 244, 247, 266, 286, 353, 435, 1049
MhlI GDGCHC 1 cut(s) 93
MlyI GAGTC 2 cut(s) 167, 1457
MmeI TCCRAC 1 cut(s) 583
MseI TTAA 5 cut(s) 66, 123, 216, 1113, 1573
MslI CAYNNNNRTG 3 cut(s) 639, 1160, 1456
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 2 cut(s) 647, 1340
MspR9I CCNGG 3 cut(s) 146, 245, 589
Mva1269I GAATGC 1 cut(s) 699
MvaI CCWGG 3 cut(s) 146, 245, 589
MwoI GCNNNNNNNGC 4 cut(s) 220, 950, 1084, 1089
NcoI CCATGG 2 cut(s) 715, 1549
NdeII GATC 9 cut(s) 322, 550, 576, 706, 749, 879, 1006, 1303, 1390
NlaIII CATG 7 cut(s) 486, 570, 638, 644, 719, 1403, 1553
NlaIV GGNNCC 2 cut(s) 593, 1344
NmeAIII GCCGAG 2 cut(s) 1432, 1471
NmuCI GTSAC 3 cut(s) 910, 1449, 1540
NsbI TGCGCA 1 cut(s) 1382
NspI RCATGY 1 cut(s) 638
NspV TTCGAA 2 cut(s) 503, 849
OliI CACNNNNGTG 2 cut(s) 1160, 1456
PasI CCCWGGG 1 cut(s) 588
PciSI GCTCTTC 1 cut(s) 98
PctI GAATGC 1 cut(s) 699
PfeI GAWTC 4 cut(s) 47, 454, 761, 993
PinAI ACCGGT 1 cut(s) 1339
PkrI GCNGC 2 cut(s) 547, 1405
PleI GAGTC 2 cut(s) 167, 1456
PpsI GAGTC 2 cut(s) 167, 1456
Psp6I CCWGG 3 cut(s) 144, 243, 587
PspFI CCCAGC 1 cut(s) 1088
PspGI CCWGG 3 cut(s) 144, 243, 587
PspN4I GGNNCC 2 cut(s) 593, 1344
PspPI GGNCC 1 cut(s) 592
PstI CTGCAG 1 cut(s) 550
RsaI GTAC 2 cut(s) 639, 1566
RsaNI GTAC 2 cut(s) 638, 1565
RseI CAYNNNNRTG 3 cut(s) 639, 1160, 1456
SapI GCTCTTC 1 cut(s) 98
SaqAI TTAA 5 cut(s) 66, 123, 216, 1113, 1573
SatI GCNGC 2 cut(s) 546, 1404
Sau3AI GATC 9 cut(s) 322, 550, 576, 706, 749, 879, 1006, 1303, 1390
Sau96I GGNCC 1 cut(s) 592
ScaI AGTACT 1 cut(s) 1566
SchI GAGTC 2 cut(s) 167, 1457
ScrFI CCNGG 3 cut(s) 146, 245, 589
SduI GDGCHC 1 cut(s) 93
SexAI ACCWGGT 1 cut(s) 243
SfaNI GCATC 8 cut(s) 247, 343, 733, 1030, 1065, 1117, 1392, 1420
SfcI CTRYAG 1 cut(s) 546
SfuI TTCGAA 2 cut(s) 503, 849
SmiMI CAYNNNNRTG 3 cut(s) 639, 1160, 1456
SsiI CCGC 4 cut(s) 53, 398, 1258, 1404
SspI AATATT 2 cut(s) 560, 818
SspMI CTAG 2 cut(s) 596, 1028
StyD4I CCNGG 3 cut(s) 144, 243, 587
StyI CCWWGG 3 cut(s) 595, 715, 1549
TaaI ACNGT 7 cut(s) 193, 466, 782, 1436, 1455, 1546, 1569
TaiI ACGT 1 cut(s) 1219
TaqI TCGA 5 cut(s) 325, 419, 503, 849, 1133
TaqII GACCGA 1 cut(s) 929
TatI WGTACW 2 cut(s) 637, 1564
TauI GCSGC 1 cut(s) 1406
TfiI GAWTC 4 cut(s) 47, 454, 761, 993
Tru1I TTAA 5 cut(s) 66, 123, 216, 1113, 1573
Tru9I TTAA 5 cut(s) 66, 123, 216, 1113, 1573
TscAI CASTG 4 cut(s) 828, 1439, 1447, 1549
TseFI GTSAC 3 cut(s) 910, 1449, 1540
TseI GCWGC 1 cut(s) 545
Tsp45I GTSAC 3 cut(s) 910, 1449, 1540
TspRI CASTG 4 cut(s) 828, 1439, 1447, 1549
XapI RAATTY 7 cut(s) 56, 793, 845, 1056, 1118, 1193, 1359
XceI RCATGY 1 cut(s) 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 1363
XmaJI CCTAGG 1 cut(s) 595
XmiI GTMKAC 1 cut(s) 689
XspI CTAG 2 cut(s) 596, 1028
ZrmI AGTACT 1 cut(s) 1566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.