Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

37296196 .. 37297247

Gene Structure 1052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0215400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCACAAAGAATTGAAAAGAGTCTCTTCCTCGTTCTGGTGACCATTTTCTTGGCAAGAGCAGCAGCACAGTCAAGTTGCACAAATGTGATAATCAGCATGTCCCCATGCCTGAATTACATTACTGGGAACTCCTCAACCCCATCTTCAGGATGCTGCTCGCAGCTCGCTACCGTTGTCCGATCATCCCCACAGTGTTTGTGCCAGGTCATTAATGGCGGTGGATCATCACTGGGGGTCAATGTTAATCAAACTCAAGCTCGCGCTTTACCCGGTGCTTGCAATGTTCAGACTCCGCCCCTCAGCCAGTGTAACGCTGCTTCTCCAGCTGACTCTCCTGCAGGAACACCCGATGATTCATCAAACACAGTTCCTTCAGGAAGCGGATCTAACACTGTACCATCAACTGACGATGGCTCATCAGATGGAAACTCCATCAAGTTGTCTATGACTCAACTCGTTGTGCTCTTAGCTGCAGCATTTGCTACTCTCTCAATGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

167

Amino Acids

16.84

Weight (kDa)

5.51

Isoelectric Point (pI)

58.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	17 - 104	2.4e-18	Probable lipid transfer
Tryp_alpha_amyl	PF00234	27 - 104	3.2e-13	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	264
AciI	CCGC	3 cut(s)	219, 296, 384
AclWI	GGATC	2 cut(s)	232, 394
AcuI	CTGAAG	2 cut(s)	132, 360
AfaI	GTAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	2 cut(s)	37, 149
AgsI	TTSAA	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	204
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	4 cut(s)	166, 260, 329, 473
AluI	AGCT	4 cut(s)	166, 260, 329, 473
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	2 cut(s)	232, 394
ApeKI	GCWGC	7 cut(s)	62, 65, 156, 163, 317, 473, 476
AseI	ATTAAT	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	52
BarI	GAAGNNNNNNTAC	2 cut(s)	304, 336
Bbv12I	GWGCWC	1 cut(s)	468
BbvCI	CCTCAGC	1 cut(s)	302
BbvI	GCAGC	7 cut(s)	74, 77, 143, 175, 304, 460, 488
BccI	CCATC	5 cut(s)	151, 407, 409, 419, 443
BciT130I	CCWGG	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	29
BfmI	CTRYAG	2 cut(s)	339, 474
BisI	GCNGC	7 cut(s)	63, 66, 157, 164, 318, 474, 477
BlsI	GCNGC	7 cut(s)	64, 67, 158, 165, 319, 475, 478
Bme1390I	CCNGG	2 cut(s)	206, 273
BmrFI	CCNGG	2 cut(s)	206, 273
BmrI	ACTGGG	2 cut(s)	135, 242
BmsI	GCATC	1 cut(s)	143
BmuI	ACTGGG	2 cut(s)	135, 242
BpmI	CTGGAG	1 cut(s)	309
Bpu10I	CCTNAGC	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 149
Bse1I	ACTGG	3 cut(s)	130, 237, 307
Bse3DI	GCAATG	1 cut(s)	289
BseBI	CCWGG	1 cut(s)	206
BseGI	GGATG	2 cut(s)	158, 185
BseLI	CCNNNNNNNGG	2 cut(s)	37, 149
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	316
BseNI	ACTGG	3 cut(s)	130, 237, 307
BseRI	GAGGAG	1 cut(s)	124
BseXI	GCAGC	7 cut(s)	74, 77, 143, 175, 304, 460, 488
Bsh1236I	CGCG	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	468
BsiSI	CCGG	1 cut(s)	273
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	2 cut(s)	37, 149
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	3 cut(s)	182, 224, 386
BspACI	CCGC	3 cut(s)	219, 296, 384
BspCNI	CTCAG	1 cut(s)	315
BspFNI	CGCG	1 cut(s)	264
BspMAI	CTGCAG	2 cut(s)	343, 478
BspPI	GGATC	2 cut(s)	232, 394
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	3 cut(s)	130, 237, 307
BssMI	GATC	3 cut(s)	182, 224, 386
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	5 cut(s)	72, 175, 195, 370, 397
Bst6I	CTCTTC	1 cut(s)	32
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstC8I	GCNNGC	4 cut(s)	161, 168, 262, 280
BstDEI	CTNAG	2 cut(s)	302, 469
BstEII	GGTNACC	1 cut(s)	40
BstF5I	GGATG	2 cut(s)	158, 185
BstFNI	CGCG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	3 cut(s)	185, 227, 389
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	3 cut(s)	182, 224, 386
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 326, 482
BstNI	CCWGG	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	103
BstPI	GGTNACC	1 cut(s)	40
BstSCI	CCNGG	2 cut(s)	204, 271
BstSFI	CTRYAG	2 cut(s)	339, 474
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	7 cut(s)	74, 77, 143, 175, 304, 460, 488
BstX2I	RGATCY	1 cut(s)	386
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	386
BtsCI	GGATG	2 cut(s)	158, 185
BtsIMutI	CAGTG	5 cut(s)	200, 230, 314, 393, 499
Cac8I	GCNNGC	4 cut(s)	161, 168, 262, 280
CfoI	GCGC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	398
CspCI	CAANNNNNGTGG	2 cut(s)	180, 215
CviAII	CATG	2 cut(s)	100, 108
CviJI	RGCY	6 cut(s)	166, 260, 306, 329, 417, 473
CviKI_1	RGCY	6 cut(s)	166, 260, 306, 329, 417, 473
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	2 cut(s)	302, 469
DpnI	GATC	3 cut(s)	184, 226, 388
DpnII	GATC	3 cut(s)	182, 224, 386
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	1 cut(s)	285
Eco57I	CTGAAG	2 cut(s)	132, 360
Eco91I	GGTNACC	1 cut(s)	40
EcoO65I	GGTNACC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	204
FaeI	CATG	2 cut(s)	103, 111
FaiI	YATR	3 cut(s)	101, 109, 449
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	2 cut(s)	99, 107
Fnu4HI	GCNGC	7 cut(s)	63, 66, 157, 164, 318, 474, 477
FokI	GGATG	2 cut(s)	165, 172
Fsp4HI	GCNGC	7 cut(s)	63, 66, 157, 164, 318, 474, 477
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	7 cut(s)	63, 66, 157, 164, 318, 474, 477
GsuI	CTGGAG	1 cut(s)	309
HapII	CCGG	1 cut(s)	273
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	2 cut(s)	103, 111
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HinfI	GANTC	5 cut(s)	22, 292, 332, 356, 451
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	1 cut(s)	52
Hpy188I	TCNGA	3 cut(s)	182, 291, 424
Hpy188III	TCNNGA	2 cut(s)	150, 378
HpyAV	CCTTC	1 cut(s)	384
HpyCH4III	ACNGT	5 cut(s)	72, 175, 195, 370, 397
HpyCH4V	TGCA	5 cut(s)	81, 282, 341, 476, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 326, 482
HpyF3I	CTNAG	2 cut(s)	302, 469
Hsp92II	CATG	2 cut(s)	103, 111
HspAI	GCGC	1 cut(s)	264
Kzo9I	GATC	3 cut(s)	182, 224, 386
Lsp1109I	GCAGC	7 cut(s)	74, 77, 143, 175, 304, 460, 488
LweI	GCATC	1 cut(s)	143
MaeIII	GTNAC	2 cut(s)	40, 311
MalI	GATC	3 cut(s)	184, 226, 388
MboI	GATC	3 cut(s)	182, 224, 386
MboII	GAAGA	2 cut(s)	19, 138
MflI	RGATCY	1 cut(s)	386
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	2 cut(s)	12, 115
MlyI	GAGTC	4 cut(s)	31, 286, 326, 445
MnlI	CCTC	3 cut(s)	41, 145, 311
MseI	TTAA	2 cut(s)	213, 246
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	2 cut(s)	206, 273
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	3 cut(s)	62, 326, 482
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	3 cut(s)	182, 224, 386
NlaIII	CATG	2 cut(s)	103, 111
NmuCI	GTSAC	1 cut(s)	40
NspI	RCATGY	1 cut(s)	103
OliI	CACNNNNGTG	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	356
PkrI	GCNGC	7 cut(s)	64, 67, 158, 165, 319, 475, 478
PleI	GAGTC	4 cut(s)	30, 286, 326, 445
PpsI	GAGTC	4 cut(s)	30, 286, 326, 445
PshBI	ATTAAT	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	204
PspEI	GGTNACC	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	204
PstI	CTGCAG	2 cut(s)	343, 478
PsuI	RGATCY	1 cut(s)	386
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	213, 246
SatI	GCNGC	7 cut(s)	63, 66, 157, 164, 318, 474, 477
Sau3AI	GATC	3 cut(s)	182, 224, 386
SbfI	CCTGCAGG	1 cut(s)	343
SchI	GAGTC	4 cut(s)	31, 286, 326, 445
ScrFI	CCNGG	2 cut(s)	206, 273
SdaI	CCTGCAGG	1 cut(s)	343
SduI	GDGCHC	1 cut(s)	468
SetI	ASST	5 cut(s)	168, 210, 262, 331, 475
SfaNI	GCATC	1 cut(s)	143
SfcI	CTRYAG	2 cut(s)	339, 474
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
Sse8387I	CCTGCAGG	1 cut(s)	343
Sse9I	AATT	2 cut(s)	12, 115
SsiI	CCGC	3 cut(s)	219, 296, 384
StyD4I	CCNGG	2 cut(s)	204, 271
TaaI	ACNGT	5 cut(s)	72, 175, 195, 370, 397
TasI	AATT	2 cut(s)	12, 115
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	2 cut(s)	213, 246
Tru9I	TTAA	2 cut(s)	213, 246
TscAI	CASTG	4 cut(s)	200, 237, 314, 400
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	7 cut(s)	62, 65, 156, 163, 317, 473, 476
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	348
TspRI	CASTG	4 cut(s)	200, 237, 314, 400
VspI	ATTAAT	1 cut(s)	213
XceI	RCATGY	1 cut(s)	103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.