RLG00000007269

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
15205926 .. 15208866
2941 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007269

Sequence Viewer

Length: 777 bp
ATGCCTAGGTCATCGTCCCAATTGCAACCCTTTAATAAGCACACGCTCAACATGACGTCGCCGGCGGCCTCCGAACTCTCTCCACTCAAATTGAGCCTTCAGTACTCGCATCTGTCACCAGTTCCTGCTCTGCACATAACTCCTGTTAGCGCAGCCAGGTTGCCATTGCAATGGAGCTGCTTGGAATCACTTGTCCCAGTACTCCGCACAGCGGCTTGGGCAGTCCAACTGATATCGAGCTTGCTCATGTTCTTCAGGGAGTCTCAAAGCCCTAGATTATTAGACCAAAGACAAAGTAGTGGCTTAGTTCCGCAAGAGGTAGGGAAATCAGGGATGCGCAAACCATTTCTAGATGCTACTCCAACTCATTACACTGTAAAAATAGAGTTATTTTCAAGGCTAAAGAAGTTTTGTGAAGAGGATCCATATGAATCAAGAGAGTTTGAAGCCCTTTGTCTGAAGATAGAACTCTATCCCAAGGGAATTAATAAAGGAAAGGGTAGTCATGTTTCTCTGTTTTTTAAACTGGCTGATCCGGAAACCCTTCCTCCTGGCTCTAAAATATATGCAGACTGTACACTACGCATCCAAGATCAAATTCATTTCAAGCATGATCATGGAAGAGGGTATGCAAGTGCGTTGTCTTGGTGGTGGCGTCAACGGGATATTGTTGGAATGGTGGCGACGGCGGTCATGGCAAGTGTTGAGATCATGGTTCTGGTGGTGGTAGGGGTTGGCCCCGGGTCAGCCTTGTTGGGCTTGGTCTTAGGCAGTTAA

Protein Analysis

259

Amino Acids

28.62

Weight (kDa)

9.17

Isoelectric Point (pI)

58.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 123 - 213 7.8e-14 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 59
Acc16I TGCGCA 1 cut(s) 338
AccIII TCCGGA 1 cut(s) 535
AciI CCGC 5 cut(s) 65, 205, 212, 311, 689
AclWI GGATC 3 cut(s) 416, 429, 527
AcsI RAATTY 1 cut(s) 597
AcuI CTGAAG 3 cut(s) 83, 238, 479
AcyI GRCGYC 2 cut(s) 56, 655
AfaI GTAC 3 cut(s) 104, 201, 577
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 3 cut(s) 396, 446, 607
AjnI CCWGG 2 cut(s) 155, 550
AjuI GAANNNNNNNTTGG 2 cut(s) 582, 614
AluBI AGCT 2 cut(s) 177, 240
AluI AGCT 2 cut(s) 177, 240
Alw26I GTCTC 1 cut(s) 267
AlwI GGATC 3 cut(s) 416, 429, 527
AlwNI CAGNNNCTG 1 cut(s) 125
Ama87I CYCGRG 1 cut(s) 740
Aor13HI TCCGGA 1 cut(s) 535
AoxI GGCC 2 cut(s) 66, 736
ApeKI GCWGC 2 cut(s) 152, 177
ApoI RAATTY 1 cut(s) 597
AseI ATTAAT 1 cut(s) 486
Asp700I GAANNNNTTC 1 cut(s) 543
AspA2I CCTAGG 1 cut(s) 5
AspLEI GCGC 2 cut(s) 152, 339
AspS9I GGNCC 1 cut(s) 737
AsuC2I CCSGG 2 cut(s) 741, 742
AsuHPI GGTGA 1 cut(s) 108
AvaI CYCGRG 1 cut(s) 740
AvrII CCTAGG 1 cut(s) 5
BamHI GGATCC 1 cut(s) 421
BbvI GCAGC 2 cut(s) 164, 164
BceAI ACGGC 1 cut(s) 702
BciT130I CCWGG 2 cut(s) 157, 552
BclI TGATCA 1 cut(s) 613
BcnI CCSGG 2 cut(s) 741, 742
BcoDI GTCTC 1 cut(s) 267
BfaI CTAG 3 cut(s) 6, 273, 350
BisI GCNGC 4 cut(s) 66, 153, 178, 213
BlnI CCTAGG 1 cut(s) 5
BlsI GCNGC 4 cut(s) 67, 154, 179, 214
BmcAI AGTACT 2 cut(s) 104, 201
Bme1390I CCNGG 4 cut(s) 157, 552, 741, 742
BmeT110I CYCGRG 1 cut(s) 740
BmgT120I GGNCC 1 cut(s) 737
BmiI GGNNCC 2 cut(s) 423, 739
BmrFI CCNGG 4 cut(s) 157, 552, 741, 742
BmrI ACTGGG 1 cut(s) 191
BmsI GCATC 4 cut(s) 118, 324, 343, 594
BmuI ACTGGG 1 cut(s) 191
BoxI GACNNNNGTC 1 cut(s) 689
BpuMI CCSGG 2 cut(s) 741, 742
BsaHI GRCGYC 2 cut(s) 56, 655
BsaJI CCNNGG 4 cut(s) 5, 477, 739, 740
BsaWI WCCGGW 1 cut(s) 535
BsaXI ACNNNNNCTCC 2 cut(s) 532, 562
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 3 cut(s) 119, 197, 531
Bse3DI GCAATG 2 cut(s) 164, 176
BseAI TCCGGA 1 cut(s) 535
BseBI CCWGG 2 cut(s) 157, 552
BseDI CCNNGG 4 cut(s) 5, 477, 739, 740
BseGI GGATG 2 cut(s) 339, 585
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMI GCAATG 2 cut(s) 164, 176
BseNI ACTGG 3 cut(s) 119, 197, 531
BseXI GCAGC 2 cut(s) 164, 164
BsgI GTGCAG 1 cut(s) 116
BshFI GGCC 2 cut(s) 68, 738
BsiHKCI CYCGRG 1 cut(s) 740
BsiSI CCGG 3 cut(s) 62, 536, 741
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 2 cut(s) 68, 738
BsoBI CYCGRG 1 cut(s) 740
Bsp13I TCCGGA 1 cut(s) 535
Bsp1407I TGTACA 1 cut(s) 575
Bsp143I GATC 5 cut(s) 421, 532, 592, 613, 708
BspACI CCGC 5 cut(s) 65, 205, 212, 311, 689
BspANI GGCC 2 cut(s) 68, 738
BspEI TCCGGA 1 cut(s) 535
BspLI GGNNCC 2 cut(s) 423, 739
BspPI GGATC 3 cut(s) 416, 429, 527
BsrDI GCAATG 2 cut(s) 164, 176
BsrFI RCCGGY 1 cut(s) 61
BsrGI TGTACA 1 cut(s) 575
BsrI ACTGG 3 cut(s) 119, 197, 531
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 4 cut(s) 5, 477, 739, 740
BssMI GATC 5 cut(s) 421, 532, 592, 613, 708
BssNI GRCGYC 2 cut(s) 56, 655
BssT1I CCWWGG 2 cut(s) 5, 477
Bst2UI CCWGG 2 cut(s) 157, 552
Bst4CI ACNGT 2 cut(s) 376, 575
Bst6I CTCTTC 2 cut(s) 411, 616
BstACI GRCGYC 2 cut(s) 56, 655
BstAUI TGTACA 1 cut(s) 575
BstC8I GCNNGC 2 cut(s) 63, 242
BstDEI CTNAG 2 cut(s) 304, 766
BstF5I GGATG 2 cut(s) 339, 585
BstHHI GCGC 2 cut(s) 152, 339
BstKTI GATC 5 cut(s) 424, 535, 595, 616, 711
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 5 cut(s) 421, 532, 592, 613, 708
BstMWI GCNNNNNNNGC 2 cut(s) 218, 695
BstNI CCWGG 2 cut(s) 157, 552
BstPAI GACNNNNGTC 1 cut(s) 689
BstSCI CCNGG 4 cut(s) 155, 550, 739, 740
BstV1I GCAGC 2 cut(s) 164, 164
BstX2I RGATCY 1 cut(s) 421
BstXI CCANNNNNNTGG 1 cut(s) 171
BstYI RGATCY 1 cut(s) 421
BsuRI GGCC 2 cut(s) 68, 738
BtsCI GGATG 2 cut(s) 339, 585
BtsIMutI CAGTG 1 cut(s) 372
Cac8I GCNNGC 2 cut(s) 63, 242
CaiI CAGNNNCTG 1 cut(s) 125
CfoI GCGC 2 cut(s) 152, 339
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 737
Cfr9I CCCGGG 1 cut(s) 740
CseI GACGC 1 cut(s) 644
Csp6I GTAC 3 cut(s) 103, 200, 576
CspCI CAANNNNNGTGG 2 cut(s) 72, 107
CviAII CATG 7 cut(s) 52, 247, 506, 611, 617, 694, 712
CviQI GTAC 3 cut(s) 103, 200, 576
DdeI CTNAG 2 cut(s) 304, 766
DpnI GATC 5 cut(s) 423, 534, 594, 615, 710
DpnII GATC 5 cut(s) 421, 532, 592, 613, 708
DraI TTTAAA 1 cut(s) 523
Eam1104I CTCTTC 2 cut(s) 411, 616
EarI CTCTTC 2 cut(s) 411, 616
Eco130I CCWWGG 2 cut(s) 5, 477
Eco32I GATATC 1 cut(s) 234
Eco57I CTGAAG 3 cut(s) 83, 238, 479
Eco88I CYCGRG 1 cut(s) 740
EcoRII CCWGG 2 cut(s) 155, 550
EcoRV GATATC 1 cut(s) 234
EcoT14I CCWWGG 2 cut(s) 5, 477
ErhI CCWWGG 2 cut(s) 5, 477
FaeI CATG 7 cut(s) 55, 250, 509, 614, 620, 697, 715
FaqI GGGAC 1 cut(s) 179
FatI CATG 7 cut(s) 51, 246, 505, 610, 616, 693, 711
FauNDI CATATG 1 cut(s) 427
FbaI TGATCA 1 cut(s) 613
Fnu4HI GCNGC 4 cut(s) 66, 153, 178, 213
FokI GGATG 2 cut(s) 346, 572
Fsp4HI GCNGC 4 cut(s) 66, 153, 178, 213
FspBI CTAG 3 cut(s) 6, 273, 350
FspI TGCGCA 1 cut(s) 338
GlaI GCGC 2 cut(s) 151, 338
GluI GCNGC 4 cut(s) 66, 153, 178, 213
HaeIII GGCC 2 cut(s) 68, 738
HapII CCGG 3 cut(s) 62, 536, 741
HgaI GACGC 1 cut(s) 644
HhaI GCGC 2 cut(s) 152, 339
Hin1I GRCGYC 2 cut(s) 56, 655
Hin1II CATG 7 cut(s) 55, 250, 509, 614, 620, 697, 715
Hin6I GCGC 2 cut(s) 150, 337
HinP1I GCGC 2 cut(s) 150, 337
HincII GTYRAC 1 cut(s) 659
HindII GTYRAC 1 cut(s) 659
HinfI GANTC 3 cut(s) 185, 260, 431
HpaII CCGG 3 cut(s) 62, 536, 741
HphI GGTGA 1 cut(s) 108
Hpy166II GTNNAC 2 cut(s) 578, 659
Hpy188I TCNGA 2 cut(s) 73, 459
Hpy188III TCNNGA 3 cut(s) 350, 435, 536
Hpy8I GTNNAC 2 cut(s) 578, 659
Hpy99I CGWCG 2 cut(s) 61, 688
HpyAV CCTTC 2 cut(s) 107, 554
HpyCH4III ACNGT 2 cut(s) 376, 575
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 5 cut(s) 25, 133, 169, 569, 632
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 695
HpyF3I CTNAG 2 cut(s) 304, 766
HpySE526I ACGT 1 cut(s) 56
Hsp92I GRCGYC 2 cut(s) 56, 655
Hsp92II CATG 7 cut(s) 55, 250, 509, 614, 620, 697, 715
HspAI GCGC 2 cut(s) 150, 337
Kpn2I TCCGGA 1 cut(s) 535
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 5 cut(s) 421, 532, 592, 613, 708
LmnI GCTCC 1 cut(s) 174
Lsp1109I GCAGC 2 cut(s) 164, 164
LweI GCATC 4 cut(s) 118, 324, 343, 594
MaeI CTAG 3 cut(s) 6, 273, 350
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 1 cut(s) 114
MalI GATC 5 cut(s) 423, 534, 594, 615, 710
MboI GATC 5 cut(s) 421, 532, 592, 613, 708
MboII GAAGA 4 cut(s) 244, 428, 472, 633
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 1 cut(s) 421
MluCI AATT 4 cut(s) 20, 89, 483, 597
MlyI GAGTC 1 cut(s) 269
MmeI TCCRAC 3 cut(s) 250, 386, 652
MnlI CCTC 5 cut(s) 79, 310, 412, 558, 617
MreI CGCCGGCG 1 cut(s) 61
MroI TCCGGA 1 cut(s) 535
MroNI GCCGGC 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 4 cut(s) 33, 486, 522, 775
MslI CAYNNNNRTG 2 cut(s) 169, 615
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 3 cut(s) 62, 536, 741
MspR9I CCNGG 4 cut(s) 157, 552, 741, 742
MunI CAATTG 1 cut(s) 20
MvaI CCWGG 2 cut(s) 157, 552
MwoI GCNNNNNNNGC 2 cut(s) 218, 695
NaeI GCCGGC 1 cut(s) 63
NciI CCSGG 2 cut(s) 741, 742
NdeI CATATG 1 cut(s) 427
NdeII GATC 5 cut(s) 421, 532, 592, 613, 708
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 7 cut(s) 55, 250, 509, 614, 620, 697, 715
NlaIV GGNNCC 2 cut(s) 423, 739
NmuCI GTSAC 1 cut(s) 114
NsbI TGCGCA 1 cut(s) 338
PdiI GCCGGC 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 2 cut(s) 185, 431
PkrI GCNGC 4 cut(s) 67, 154, 179, 214
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
PshAI GACNNNNGTC 1 cut(s) 689
PshBI ATTAAT 1 cut(s) 486
Psp6I CCWGG 2 cut(s) 155, 550
PspGI CCWGG 2 cut(s) 155, 550
PspN4I GGNNCC 2 cut(s) 423, 739
PspPI GGNCC 1 cut(s) 737
PstNI CAGNNNCTG 1 cut(s) 125
PsuI RGATCY 1 cut(s) 421
RsaI GTAC 3 cut(s) 104, 201, 577
RsaNI GTAC 3 cut(s) 103, 200, 576
RseI CAYNNNNRTG 2 cut(s) 169, 615
SaqAI TTAA 4 cut(s) 33, 486, 522, 775
SatI GCNGC 4 cut(s) 66, 153, 178, 213
Sau3AI GATC 5 cut(s) 421, 532, 592, 613, 708
Sau96I GGNCC 1 cut(s) 737
ScaI AGTACT 2 cut(s) 104, 201
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 4 cut(s) 157, 552, 741, 742
SetI ASST 6 cut(s) 11, 59, 161, 179, 242, 321
SfaNI GCATC 4 cut(s) 118, 324, 343, 594
SgrAI CRCCGGYG 1 cut(s) 61
SmaI CCCGGG 1 cut(s) 742
SmiMI CAYNNNNRTG 2 cut(s) 169, 615
Sse9I AATT 4 cut(s) 20, 89, 483, 597
SsiI CCGC 5 cut(s) 65, 205, 212, 311, 689
SspMI CTAG 3 cut(s) 6, 273, 350
StyD4I CCNGG 4 cut(s) 155, 550, 739, 740
StyI CCWWGG 2 cut(s) 5, 477
TaaI ACNGT 2 cut(s) 376, 575
TaiI ACGT 1 cut(s) 59
TaqI TCGA 1 cut(s) 236
TasI AATT 4 cut(s) 20, 89, 483, 597
TatI WGTACW 3 cut(s) 102, 199, 575
TauI GCSGC 2 cut(s) 68, 215
TfiI GAWTC 2 cut(s) 185, 431
Tru1I TTAA 4 cut(s) 33, 486, 522, 775
Tru9I TTAA 4 cut(s) 33, 486, 522, 775
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 1 cut(s) 114
TseI GCWGC 2 cut(s) 152, 177
Tsp45I GTSAC 1 cut(s) 114
TspDTI ATGAA 2 cut(s) 444, 590
TspMI CCCGGG 1 cut(s) 740
TspRI CASTG 1 cut(s) 379
VspI ATTAAT 1 cut(s) 486
XapI RAATTY 1 cut(s) 597
XbaI TCTAGA 1 cut(s) 349
XmaI CCCGGG 1 cut(s) 740
XmaJI CCTAGG 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 543
XspI CTAG 3 cut(s) 6, 273, 350
ZraI GACGTC 1 cut(s) 57
ZrmI AGTACT 2 cut(s) 104, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.