Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8499169.1

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

761 .. 1973

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8499169.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgtgcttcaatggggatatgccttgtgcggccggttttgataagcttatccgcgttaaagattttactgatgactccaacggatatctagttgatgacacgtgcatgtttggtgctgatgtctttgtctgtaaagaaaggagaacaggcaaaggggagtgtctatcaaggatccagaatccttcaacgtacaagaagatagaactccatcccaagggaattaatataggaaagggtagtcatgtttctctgttttttaaactggctgattcggaaacccttcctcctggctctaaaatatatgcagactgtacagtacgcatccaagatcaaattcatttcaagcattatcatggaagaggtagtggcagtttccacgctacagacacatcttggggttggtttaaattcatcaaacaagacactttcagtcaagctggcaatgggtttttggagaatgatacttgcatagtggaggcagaggtcactgtacgtggaataaccagagctctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

171

Amino Acids

19.07

Weight (kDa)

6.99

Isoelectric Point (pI)

23.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	54
AciI	CCGC	2 cut(s)	29, 52
AclWI	GGATC	2 cut(s)	166, 179
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	2 cut(s)	333, 407
AcvI	CACGTG	1 cut(s)	102
AfaI	GTAC	4 cut(s)	191, 313, 318, 492
AfiI	CCNNNNNNNGG	1 cut(s)	214
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	3 cut(s)	10, 186, 343
AjnI	CCWGG	1 cut(s)	286
AjuI	GAANNNNNNNTTGG	2 cut(s)	318, 350
AluBI	AGCT	3 cut(s)	46, 437, 509
AluI	AGCT	3 cut(s)	46, 437, 509
Alw21I	GWGCWC	1 cut(s)	511
AlwI	GGATC	2 cut(s)	166, 179
AoxI	GGCC	1 cut(s)	30
ApoI	RAATTY	2 cut(s)	333, 407
AseI	ATTAAT	1 cut(s)	222
Asp700I	GAANNNNTTC	1 cut(s)	279
BamHI	GGATCC	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	511
BbrPI	CACGTG	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	511
BccI	CCATC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	288
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	381
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	288
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	330
BsaAI	YACGTR	2 cut(s)	102, 494
BsaJI	CCNNGG	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	267
Bse3DI	GCAATG	1 cut(s)	448
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	208, 321
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMI	GCAATG	1 cut(s)	448
BseNI	ACTGG	1 cut(s)	267
BseX3I	CGGCCG	1 cut(s)	30
Bsh1236I	CGCG	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	511
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	214
BsnI	GGCC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp1407I	TGTACA	1 cut(s)	311
Bsp143I	GATC	2 cut(s)	171, 328
BspACI	CCGC	2 cut(s)	29, 52
BspANI	GGCC	1 cut(s)	32
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	173
BspPI	GGATC	2 cut(s)	166, 179
BsrDI	GCAATG	1 cut(s)	448
BsrFI	RCCGGY	1 cut(s)	32
BsrGI	TGTACA	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	267
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	2 cut(s)	171, 328
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	3 cut(s)	311, 316, 490
Bst6I	CTCTTC	1 cut(s)	352
BstAUI	TGTACA	1 cut(s)	311
BstBAI	YACGTR	2 cut(s)	102, 494
BstC8I	GCNNGC	1 cut(s)	439
BstF5I	GGATG	2 cut(s)	208, 321
BstFNI	CGCG	1 cut(s)	54
BstKTI	GATC	2 cut(s)	174, 331
BstMBI	GATC	2 cut(s)	171, 328
BstMCI	CGRYCG	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	381
BstUI	CGCG	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BstZI	CGGCCG	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	32
BtsCI	GGATG	2 cut(s)	208, 321
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	439
Cfr10I	RCCGGY	1 cut(s)	32
Csp6I	GTAC	4 cut(s)	190, 312, 317, 491
CviAII	CATG	3 cut(s)	106, 242, 353
CviJI	RGCY	6 cut(s)	32, 46, 266, 291, 437, 509
CviKI_1	RGCY	6 cut(s)	32, 46, 266, 291, 437, 509
CviQI	GTAC	4 cut(s)	190, 312, 317, 491
DpnI	GATC	2 cut(s)	173, 330
DpnII	GATC	2 cut(s)	171, 328
DraI	TTTAAA	2 cut(s)	259, 406
EaeI	YGGCCR	1 cut(s)	30
EagI	CGGCCG	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
Ecl136II	GAGCTC	1 cut(s)	509
EclXI	CGGCCG	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	86
Eco52I	CGGCCG	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	509
Eco72I	CACGTG	1 cut(s)	102
EcoICRI	GAGCTC	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	286
EcoRV	GATATC	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	3 cut(s)	109, 245, 356
FaiI	YATR	8 cut(s)	20, 107, 227, 243, 301, 303, 354, 470
FatI	CATG	3 cut(s)	105, 241, 352
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	2 cut(s)	195, 308
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	3 cut(s)	109, 245, 356
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	3 cut(s)	74, 178, 269
HpaII	CCGG	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	1 cut(s)	175
HpyAV	CCTTC	2 cut(s)	192, 290
HpyCH4III	ACNGT	3 cut(s)	311, 316, 490
HpyCH4IV	ACGT	3 cut(s)	101, 188, 493
HpyCH4V	TGCA	3 cut(s)	105, 305, 468
HpySE526I	ACGT	3 cut(s)	101, 188, 493
Hsp92II	CATG	3 cut(s)	109, 245, 356
Kzo9I	GATC	2 cut(s)	171, 328
LpnPI	CCDG	7 cut(s)	46, 132, 188, 248, 273, 300, 423
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	3 cut(s)	101, 188, 493
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	2 cut(s)	173, 330
MboI	GATC	2 cut(s)	171, 328
MboII	GAAGA	2 cut(s)	208, 369
MflI	RGATCY	1 cut(s)	171
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	3 cut(s)	219, 333, 407
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	4 cut(s)	294, 353, 469, 475
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	4 cut(s)	57, 222, 258, 405
MslI	CAYNNNNRTG	2 cut(s)	104, 351
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	54
NdeII	GATC	2 cut(s)	171, 328
NlaIII	CATG	3 cut(s)	109, 245, 356
NlaIV	GGNNCC	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	484
NspI	RCATGY	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	178, 269
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	68
PmaCI	CACGTG	1 cut(s)	102
PmlI	CACGTG	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	68
Ppu21I	YACGTR	2 cut(s)	102, 494
PshBI	ATTAAT	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	286
PspCI	CACGTG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	171
RsaI	GTAC	4 cut(s)	191, 313, 318, 492
RsaNI	GTAC	4 cut(s)	190, 312, 317, 491
RseI	CAYNNNNRTG	2 cut(s)	104, 351
SacI	GAGCTC	1 cut(s)	511
SaqAI	TTAA	4 cut(s)	57, 222, 258, 405
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	171, 328
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	511
SetI	ASST	8 cut(s)	48, 104, 191, 364, 439, 486, 496, 511
SfaNI	GCATC	1 cut(s)	330
SfcI	CTRYAG	1 cut(s)	381
SmiMI	CAYNNNNRTG	2 cut(s)	104, 351
Sse9I	AATT	3 cut(s)	219, 333, 407
SsiI	CCGC	2 cut(s)	29, 52
SspMI	CTAG	1 cut(s)	89
SstI	GAGCTC	1 cut(s)	511
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	3 cut(s)	311, 316, 490
TaiI	ACGT	3 cut(s)	104, 191, 496
TasI	AATT	3 cut(s)	219, 333, 407
TatI	WGTACW	1 cut(s)	311
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	2 cut(s)	178, 269
Tru1I	TTAA	4 cut(s)	57, 222, 258, 405
Tru9I	TTAA	4 cut(s)	57, 222, 258, 405
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	1 cut(s)	484
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	2 cut(s)	326, 400
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	493
VspI	ATTAAT	1 cut(s)	222
XapI	RAATTY	2 cut(s)	333, 407
XceI	RCATGY	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.