Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

38048198 .. 38050078

Gene Structure 1881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG200200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCCTTTTTCTGCAATGGAGAACCAGAATATTGGGGTTACAAGATCCAAAAGAGACCTTCCACCGGCTCATTTTTCTTTGAAAATACAAACCTACTCCTTACTACCAAAGACAGAAGTTGAAAAGTATGATTCTGGTGTTTTTGAAGCTGGAGGCCACAAATGGAGGTTGTCTCTTCACCCAAACGAAACAGAAGAAGGGATTGGCTACATCTCCCTCTACTTGGCAATAGCGGAAACAGATACTTATCCTGAAGGGTGGGAGGTTTATGCCGACTACAAATTGTTTGTGCTTGATCATTTACAGAAGAAGTACTTAACTGTCCAAGATGCTGATGGAGATATGAAAAGGTTTCATAAGGAAAAGACTGAGTGGGGATTTGCAAAGTTACTTACCCTTGAAGCTTTCAAAAATTCTTCTAATGGATATCTTGTTGATGACTGCTGCGAGTTTGGGGCAGAGGTTTTTGTTTATAGTCGCAATAACGAATGGGAATCTCTTGCCATGGTTAAGGAACCTAGTGATGGTACTTTCCGTTATGAGATGGAAAATTTCTCAGCAAAAGCTCAGCCTTCTTATTACTCGAAAGTGTTCACAGTTGGTGAGCGAAATTGGAAATTAAAGGTTTGGCCGAAAGGGAACGGTGCTCAGAGGGGCAAAGCATTATCTATATTCGTAATTTTGGATGACTGGAAGAGCCTTCCACCTAAGAGAACATTATATGCAAAATACAAGCTCGGGATATTAGATCAAGTTAGTGGTAAACATGAACAAACCACAGGTTCTCACTGGTTCTCTTCCTCAAGCAGCGAATGGGGTTTTCCAATCTTTCTGACGTTGGATAAACTCCATCAAGACTCGAATGGGTTCATTAAGGATGATAAATTGATTGCTGAAATTGAATTCCTCACCATCTCTGTGATTAAGGTTTACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

312

Amino Acids

35.84

Weight (kDa)

5.96

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	24 - 155	8.5e-33	MATH domain
MATH	PF00917	41 - 157	3e-12	MATH domain
MATH_2	PF22486	178 - 301	1.5e-27	MATH domain
MATH	PF00917	184 - 301	5.2e-09	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	1 cut(s)	39
AcoI	YGGCCR	1 cut(s)	629
AcsI	RAATTY	3 cut(s)	412, 550, 902
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	2 cut(s)	314, 529
AfiI	CCNNNNNNNGG	3 cut(s)	64, 223, 524
AgsI	TTSAA	6 cut(s)	82, 122, 146, 401, 409, 902
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	4 cut(s)	149, 404, 566, 736
AluI	AGCT	4 cut(s)	149, 404, 566, 736
Alw21I	GWGCWC	1 cut(s)	649
Alw26I	GTCTC	2 cut(s)	48, 177
AlwI	GGATC	1 cut(s)	39
Ama87I	CYCGRG	1 cut(s)	737
AoxI	GGCC	2 cut(s)	154, 629
ApeKI	GCWGC	2 cut(s)	444, 807
ApoI	RAATTY	3 cut(s)	412, 550, 902
Asp700I	GAANNNNTTC	2 cut(s)	590, 866
AsuHPI	GGTGA	3 cut(s)	170, 614, 901
AvaI	CYCGRG	1 cut(s)	737
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	2 cut(s)	431, 819
BccI	CCATC	5 cut(s)	329, 518, 538, 858, 920
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	2 cut(s)	48, 177
BfaI	CTAG	1 cut(s)	519
BisI	GCNGC	2 cut(s)	445, 808
BlpI	GCTNAGC	1 cut(s)	567
BlsI	GCNGC	2 cut(s)	446, 809
BmcAI	AGTACT	1 cut(s)	314
BmeT110I	CYCGRG	1 cut(s)	737
BmiI	GGNNCC	1 cut(s)	516
BmsI	GCATC	1 cut(s)	319
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
BpmI	CTGGAG	1 cut(s)	171
Bpu1102I	GCTNAGC	1 cut(s)	567
BpuEI	CTTGAG	1 cut(s)	787
BsaBI	GATNNNNATC	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	504
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 223, 524
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	2 cut(s)	695, 794
Bse3DI	GCAATG	1 cut(s)	21
Bse8I	GATNNNNATC	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	2 cut(s)	691, 883
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	3 cut(s)	64, 223, 524
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	4 cut(s)	360, 570, 581, 662
BseNI	ACTGG	2 cut(s)	695, 794
BseXI	GCAGC	2 cut(s)	431, 819
BshFI	GGCC	2 cut(s)	156, 631
BsiHKAI	GWGCWC	1 cut(s)	649
BsiHKCI	CYCGRG	1 cut(s)	737
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	3 cut(s)	64, 223, 524
BsmAI	GTCTC	2 cut(s)	48, 177
BsnI	GGCC	2 cut(s)	156, 631
Bso31I	GGTCTC	1 cut(s)	48
BsoBI	CYCGRG	1 cut(s)	737
Bsp1286I	GDGCHC	1 cut(s)	649
Bsp143I	GATC	3 cut(s)	44, 295, 748
Bsp1720I	GCTNAGC	1 cut(s)	567
Bsp19I	CCATGG	1 cut(s)	504
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	2 cut(s)	156, 631
BspCNI	CTCAG	4 cut(s)	361, 569, 580, 661
BspHI	TCATGA	1 cut(s)	935
BspLI	GGNNCC	1 cut(s)	516
BspPI	GGATC	1 cut(s)	39
BspQI	GCTCTTC	1 cut(s)	689
BspTNI	GGTCTC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	695, 794
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	3 cut(s)	44, 295, 748
BssT1I	CCWWGG	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	322, 598, 644
Bst6I	CTCTTC	3 cut(s)	180, 689, 802
BstDEI	CTNAG	5 cut(s)	369, 556, 567, 648, 708
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	2 cut(s)	691, 883
BstKTI	GATC	3 cut(s)	47, 298, 751
BstMAI	GTCTC	2 cut(s)	48, 177
BstMBI	GATC	3 cut(s)	44, 295, 748
BstV1I	GCAGC	2 cut(s)	431, 819
BstX2I	RGATCY	1 cut(s)	44
BstXI	CCANNNNNNTGG	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	2 cut(s)	156, 631
BtgI	CCRYGG	1 cut(s)	504
BtsCI	GGATG	2 cut(s)	691, 883
BtsIMutI	CAGTG	1 cut(s)	787
CciI	TCATGA	1 cut(s)	935
Cfr10I	RCCGGY	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	313, 528
CviAII	CATG	3 cut(s)	505, 767, 936
CviQI	GTAC	2 cut(s)	313, 528
DdeI	CTNAG	5 cut(s)	369, 556, 567, 648, 708
DpnI	GATC	3 cut(s)	46, 297, 750
DpnII	GATC	3 cut(s)	44, 295, 748
EaeI	YGGCCR	1 cut(s)	629
Eam1104I	CTCTTC	3 cut(s)	180, 689, 802
EarI	CTCTTC	3 cut(s)	180, 689, 802
Eco130I	CCWWGG	1 cut(s)	504
Eco31I	GGTCTC	1 cut(s)	48
Eco32I	GATATC	1 cut(s)	428
Eco57I	CTGAAG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	737
EcoRI	GAATTC	1 cut(s)	902
EcoRV	GATATC	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	3 cut(s)	508, 770, 939
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	3 cut(s)	504, 766, 935
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	445, 808
FokI	GGATG	2 cut(s)	698, 890
Fsp4HI	GCNGC	2 cut(s)	445, 808
FspBI	CTAG	1 cut(s)	519
GluI	GCNGC	2 cut(s)	445, 808
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	156, 631
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	3 cut(s)	508, 770, 939
HindIII	AAGCTT	1 cut(s)	402
HinfI	GANTC	3 cut(s)	131, 494, 857
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	3 cut(s)	170, 614, 901
Hpy166II	GTNNAC	3 cut(s)	594, 764, 931
Hpy188I	TCNGA	2 cut(s)	651, 834
Hpy188III	TCNNGA	4 cut(s)	251, 739, 854, 936
Hpy8I	GTNNAC	3 cut(s)	594, 764, 931
HpyAV	CCTTC	5 cut(s)	68, 191, 248, 582, 710
HpyCH4III	ACNGT	3 cut(s)	322, 598, 644
HpyCH4IV	ACGT	1 cut(s)	836
HpyCH4V	TGCA	3 cut(s)	14, 383, 725
HpyF3I	CTNAG	5 cut(s)	369, 556, 567, 648, 708
HpySE526I	ACGT	1 cut(s)	836
Hsp92II	CATG	3 cut(s)	508, 770, 939
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	44, 295, 748
LguI	GCTCTTC	1 cut(s)	689
LpnPI	CCDG	8 cut(s)	38, 78, 120, 135, 264, 676, 765, 775
Lsp1109I	GCAGC	2 cut(s)	431, 819
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	519
MaeII	ACGT	1 cut(s)	836
MaeIII	GTNAC	2 cut(s)	37, 387
MalI	GATC	3 cut(s)	46, 297, 750
MboI	GATC	3 cut(s)	44, 295, 748
MboII	GAAGA	6 cut(s)	167, 206, 319, 408, 706, 789
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	649
MluCI	AATT	9 cut(s)	281, 412, 550, 610, 617, 678, 884, 897, 902
MlyI	GAGTC	1 cut(s)	851
MmeI	TCCRAC	1 cut(s)	819
MnlI	CCTC	8 cut(s)	146, 159, 227, 256, 454, 645, 811, 917
MroXI	GAANNNNTTC	2 cut(s)	590, 866
MseI	TTAA	5 cut(s)	317, 510, 620, 873, 924
MslI	CAYNNNNRTG	1 cut(s)	917
MspI	CCGG	1 cut(s)	65
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	3 cut(s)	44, 295, 748
NlaIII	CATG	3 cut(s)	508, 770, 939
NlaIV	GGNNCC	1 cut(s)	516
PagI	TCATGA	1 cut(s)	935
PciSI	GCTCTTC	1 cut(s)	689
PdmI	GAANNNNTTC	2 cut(s)	590, 866
PfeI	GAWTC	2 cut(s)	131, 494
PkrI	GCNGC	2 cut(s)	446, 809
PleI	GAGTC	1 cut(s)	851
PpsI	GAGTC	1 cut(s)	851
PspN4I	GGNNCC	1 cut(s)	516
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	2 cut(s)	314, 529
RsaNI	GTAC	2 cut(s)	313, 528
RseI	CAYNNNNRTG	1 cut(s)	917
SapI	GCTCTTC	1 cut(s)	689
SaqAI	TTAA	5 cut(s)	317, 510, 620, 873, 924
SatI	GCNGC	2 cut(s)	445, 808
Sau3AI	GATC	3 cut(s)	44, 295, 748
ScaI	AGTACT	1 cut(s)	314
SchI	GAGTC	1 cut(s)	851
SduI	GDGCHC	1 cut(s)	649
SfaNI	GCATC	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	917
SmlI	CTYRAG	1 cut(s)	802
SmoI	CTYRAG	1 cut(s)	802
Sse9I	AATT	9 cut(s)	281, 412, 550, 610, 617, 678, 884, 897, 902
SsiI	CCGC	1 cut(s)	233
SspI	AATATT	1 cut(s)	31
SspMI	CTAG	1 cut(s)	519
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	3 cut(s)	322, 598, 644
TaiI	ACGT	1 cut(s)	839
TaqI	TCGA	2 cut(s)	584, 860
TasI	AATT	9 cut(s)	281, 412, 550, 610, 617, 678, 884, 897, 902
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	131, 494
Tru1I	TTAA	5 cut(s)	317, 510, 620, 873, 924
Tru9I	TTAA	5 cut(s)	317, 510, 620, 873, 924
TscAI	CASTG	1 cut(s)	794
TseI	GCWGC	2 cut(s)	444, 807
TspDTI	ATGAA	4 cut(s)	344, 359, 783, 859
TspGWI	ACGGA	1 cut(s)	524
TspRI	CASTG	1 cut(s)	794
XapI	RAATTY	3 cut(s)	412, 550, 902
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XmnI	GAANNNNTTC	2 cut(s)	590, 866
XspI	CTAG	1 cut(s)	519
ZrmI	AGTACT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.