RchiOBHm_Chr1g0378981

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000185
Physical Location & Seq
Forward (+)
65205645 .. 65208101
2457 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60234

Sequence Viewer

Length: 405 bp
ATGAGTTCATCGGGTCGCTGCCCGGCATGGTTCATCGGGACGCTGCCCGGCATGGTCATCGGAGGCGCTGCTCCGGCATGGTTTCATCGGGACGCTGCCCGGCATGTTGGCTTTGACATCATTGACACCCGAAGGTGCTGTTGTGAGGAGGGTTGCAACAGAAAAGAGAAGGTGGTGGAGAGCAATGGAATGAGGTCTGAACCTTTTGTCTTCCAAGCTGCTTGCTGCTTTCTCCTTCTTGTATTTTTTCCACGCTGCTGTGCTCTGTTGCGTCCTCCTGTTGTCCTCTTCACGTTGCGGCGTTGTGTCCTCCCCACGTTGCGGCCCCCTTTTTTTCTTTTCATGTGGTGCTTATATACTGCACCCGAGATGAGTTTAGCTTGTATACAACACAGAGGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.17

Weight (kDa)

8.83

Isoelectric Point (pI)

68.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 385
AciI CCGC 2 cut(s) 298, 322
AfiI CCNNNNNNNGG 1 cut(s) 321
AluBI AGCT 2 cut(s) 218, 380
AluI AGCT 2 cut(s) 218, 380
Alw21I GWGCWC 1 cut(s) 265
Ama87I CYCGRG 1 cut(s) 365
AoxI GGCC 1 cut(s) 323
ApeKI GCWGC 7 cut(s) 18, 43, 68, 95, 218, 225, 255
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 324
AsuC2I CCSGG 3 cut(s) 23, 48, 100
AvaI CYCGRG 1 cut(s) 365
BbsI GAAGAC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 7 cut(s) 5, 30, 55, 82, 205, 212, 242
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BcnI CCSGG 3 cut(s) 23, 48, 100
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 9 cut(s) 19, 44, 69, 96, 219, 226, 256, 299, 323
BlsI GCNGC 9 cut(s) 20, 45, 70, 97, 220, 227, 257, 300, 324
Bme1390I CCNGG 3 cut(s) 23, 48, 100
BmeT110I CYCGRG 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 324
BmiI GGNNCC 1 cut(s) 326
BmrFI CCNGG 3 cut(s) 23, 48, 100
BpiI GAAGAC 1 cut(s) 202
BpuMI CCSGG 3 cut(s) 23, 48, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse3DI GCAATG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMI GCAATG 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 7 cut(s) 5, 30, 55, 82, 205, 212, 242
BsgI GTGCAG 1 cut(s) 345
BshFI GGCC 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 4 cut(s) 23, 48, 74, 100
BslFI GGGAC 2 cut(s) 52, 104
BslI CCNNNNNNNGG 1 cut(s) 321
BsmFI GGGAC 2 cut(s) 52, 104
BsnI GGCC 1 cut(s) 325
BsoBI CYCGRG 1 cut(s) 365
Bsp1286I GDGCHC 1 cut(s) 265
BspACI CCGC 2 cut(s) 298, 322
BspANI GGCC 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 190
BssNAI GTATAC 1 cut(s) 386
Bst1107I GTATAC 1 cut(s) 386
Bst6I CTCTTC 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 223
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 107
BstSCI CCNGG 3 cut(s) 21, 46, 98
BstV1I GCAGC 7 cut(s) 5, 30, 55, 82, 205, 212, 242
BstV2I GAAGAC 1 cut(s) 202
BstZ17I GTATAC 1 cut(s) 386
BsuRI GGCC 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 223
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 324
CseI GACGC 3 cut(s) 49, 101, 260
CviAII CATG 5 cut(s) 27, 52, 78, 104, 343
CviJI RGCY 4 cut(s) 111, 218, 325, 380
CviKI_1 RGCY 4 cut(s) 111, 218, 325, 380
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 365
FaeI CATG 5 cut(s) 30, 55, 81, 107, 346
FaiI YATR 8 cut(s) 28, 53, 79, 105, 344, 355, 357, 386
FaqI GGGAC 2 cut(s) 52, 104
FatI CATG 5 cut(s) 26, 51, 77, 103, 342
FblI GTMKAC 1 cut(s) 385
Fnu4HI GCNGC 9 cut(s) 19, 44, 69, 96, 219, 226, 256, 299, 323
Fsp4HI GCNGC 9 cut(s) 19, 44, 69, 96, 219, 226, 256, 299, 323
GlaI GCGC 1 cut(s) 67
GluI GCNGC 9 cut(s) 19, 44, 69, 96, 219, 226, 256, 299, 323
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 325
HapII CCGG 4 cut(s) 23, 48, 74, 100
HgaI GACGC 3 cut(s) 49, 101, 260
HhaI GCGC 1 cut(s) 68
Hin1II CATG 5 cut(s) 30, 55, 81, 107, 346
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HpaII CCGG 4 cut(s) 23, 48, 74, 100
Hpy166II GTNNAC 1 cut(s) 386
Hpy188I TCNGA 2 cut(s) 62, 199
Hpy188III TCNNGA 2 cut(s) 37, 89
Hpy8I GTNNAC 1 cut(s) 386
HpyAV CCTTC 3 cut(s) 126, 163, 245
HpyCH4IV ACGT 2 cut(s) 293, 317
HpyCH4V TGCA 2 cut(s) 156, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpySE526I ACGT 2 cut(s) 293, 317
Hsp92II CATG 5 cut(s) 30, 55, 81, 107, 346
HspAI GCGC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 5 cut(s) 36, 61, 87, 113, 291
Lsp1109I GCAGC 7 cut(s) 5, 30, 55, 82, 205, 212, 242
MaeII ACGT 2 cut(s) 293, 317
MboII GAAGA 2 cut(s) 202, 280
MhlI GDGCHC 1 cut(s) 265
MnlI CCTC 8 cut(s) 56, 139, 142, 186, 285, 296, 320, 389
MspI CCGG 4 cut(s) 23, 48, 74, 100
MspR9I CCNGG 3 cut(s) 23, 48, 100
MwoI GCNNNNNNNGC 1 cut(s) 74
NciI CCSGG 3 cut(s) 23, 48, 100
NlaIII CATG 5 cut(s) 30, 55, 81, 107, 346
NlaIV GGNNCC 1 cut(s) 326
NspI RCATGY 1 cut(s) 107
PkrI GCNGC 9 cut(s) 20, 45, 70, 97, 220, 227, 257, 300, 324
PspN4I GGNNCC 1 cut(s) 326
PspPI GGNCC 1 cut(s) 324
SatI GCNGC 9 cut(s) 19, 44, 69, 96, 219, 226, 256, 299, 323
Sau96I GGNCC 1 cut(s) 324
ScrFI CCNGG 3 cut(s) 23, 48, 100
SduI GDGCHC 1 cut(s) 265
SetI ASST 8 cut(s) 137, 174, 197, 205, 220, 296, 320, 382
SsiI CCGC 2 cut(s) 298, 322
StyD4I CCNGG 3 cut(s) 21, 46, 98
TaiI ACGT 2 cut(s) 296, 320
TauI GCSGC 2 cut(s) 301, 325
TseI GCWGC 7 cut(s) 18, 43, 68, 95, 218, 225, 255
TspDTI ATGAA 3 cut(s) 22, 74, 331
XceI RCATGY 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.