Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009599.1

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

58046 .. 60668

Gene Structure 2623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009599.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgcaaatacctcttccatgttataggcttcatgtcaccattgaagatccaaacagtgaagtcacagtaaagcttagaggaaaaccagctgaacagaaactggtgctgtacccaaatggaaacaagaagaagaatgtggaagaccacatctctgtctacttgcgcatagccggagaagattcacttcagactggttggggagtatctgttgattttagattgtttttgcttgatcagaataagggaatgtacttggttcttgaagatgcttttacaaagcagaagtgctttcacgcagggttgcttcatgtaggttttgataagctaatccgtcttcaagaatttactgatgtttccaatggatatctcatcgatgacaagtgtgtatttggagctgagttctaccactcaaaacaattcagtgcagaaggactaaactgggctatagtactctatcccaagaggaaaagcaccacaaacgatccttctcatctgtctgtttacttgcaatgggttgctgaaaaaacaagtcatgtcaccaaagtatttacagagtatgccttacgcattgtagatcgaaatcatgccagcattcaatatcgctcagttaagtactgttttaacactgcctctcggactcatggttggcctgaattcatttcacttggtgatttaagtggtcttttgaagtacgatacttgcctagtggaggcagaggtcactgttcgtgcaattgctaagattcttgctaaagatgcatgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

254

Amino Acids

28.94

Weight (kDa)

8.13

Isoelectric Point (pI)

29.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	156
AclWI	GGATC	2 cut(s)	41, 476
AcsI	RAATTY	2 cut(s)	341, 653
AcuI	CTGAAG	1 cut(s)	170
AdeI	CACNNNGTG	1 cut(s)	668
AfaI	GTAC	5 cut(s)	110, 251, 450, 614, 692
AfiI	CCNNNNNNNGG	1 cut(s)	709
AgsI	TTSAA	5 cut(s)	44, 263, 338, 596, 688
AluBI	AGCT	4 cut(s)	73, 89, 325, 395
AluI	AGCT	4 cut(s)	73, 89, 325, 395
AlwI	GGATC	2 cut(s)	41, 476
AlwNI	CAGNNNCTG	1 cut(s)	100
AoxI	GGCC	1 cut(s)	647
ApoI	RAATTY	2 cut(s)	341, 653
AspLEI	GCGC	1 cut(s)	165
AsuHPI	GGTGA	3 cut(s)	28, 529, 680
BbsI	GAAGAC	2 cut(s)	147, 326
BclI	TGATCA	1 cut(s)	232
BfaI	CTAG	1 cut(s)	704
BfmI	CTRYAG	1 cut(s)	444
BmcAI	AGTACT	2 cut(s)	450, 614
BmrI	ACTGGG	1 cut(s)	448
BmsI	GCATC	2 cut(s)	256, 745
BmuI	ACTGGG	1 cut(s)	448
BpiI	GAAGAC	2 cut(s)	147, 326
Bsa29I	ATCGAT	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	579
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	709
Bse1I	ACTGG	3 cut(s)	105, 196, 443
Bse3DI	GCAATG	1 cut(s)	515
Bse8I	GATNNNNATC	1 cut(s)	579
BseCI	ATCGAT	1 cut(s)	372
BseJI	GATNNNNATC	1 cut(s)	579
BseLI	CCNNNNNNNGG	1 cut(s)	709
BseMI	GCAATG	1 cut(s)	515
BseMII	CTCAG	2 cut(s)	387, 618
BseNI	ACTGG	3 cut(s)	105, 196, 443
BsgI	GTGCAG	1 cut(s)	444
BshFI	GGCC	1 cut(s)	649
BshVI	ATCGAT	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	709
BsmI	GAATGC	1 cut(s)	591
BsnI	GGCC	1 cut(s)	649
Bsp143I	GATC	4 cut(s)	46, 232, 481, 574
BspANI	GGCC	1 cut(s)	649
BspCNI	CTCAG	2 cut(s)	388, 617
BspDI	ATCGAT	1 cut(s)	372
BspPI	GGATC	2 cut(s)	41, 476
BsrDI	GCAATG	1 cut(s)	515
BsrI	ACTGG	3 cut(s)	105, 196, 443
BssMI	GATC	4 cut(s)	46, 232, 481, 574
Bst4CI	ACNGT	4 cut(s)	56, 67, 617, 724
Bst6I	CTCTTC	1 cut(s)	18
BstC8I	GCNNGC	2 cut(s)	589, 760
BstDEI	CTNAG	4 cut(s)	74, 396, 604, 738
BstENI	CCTNNNNNAGG	1 cut(s)	707
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	4 cut(s)	49, 235, 484, 577
BstMBI	GATC	4 cut(s)	46, 232, 481, 574
BstMWI	GCNNNNNNNGC	1 cut(s)	755
BstNSI	RCATGY	1 cut(s)	762
BstSFI	CTRYAG	1 cut(s)	444
BstV2I	GAAGAC	2 cut(s)	147, 326
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	649
BsuTUI	ATCGAT	1 cut(s)	372
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	4 cut(s)	61, 427, 624, 720
Cac8I	GCNNGC	2 cut(s)	589, 760
CaiI	CAGNNNCTG	1 cut(s)	100
CfoI	GCGC	1 cut(s)	165
ClaI	ATCGAT	1 cut(s)	372
Csp6I	GTAC	5 cut(s)	109, 250, 449, 613, 691
CviAII	CATG	7 cut(s)	18, 32, 308, 533, 584, 641, 759
CviJI	RGCY	8 cut(s)	28, 73, 89, 170, 325, 395, 443, 649
CviKI_1	RGCY	8 cut(s)	28, 73, 89, 170, 325, 395, 443, 649
CviQI	GTAC	5 cut(s)	109, 250, 449, 613, 691
DdeI	CTNAG	4 cut(s)	74, 396, 604, 738
DpnI	GATC	4 cut(s)	48, 234, 483, 576
DpnII	GATC	4 cut(s)	46, 232, 481, 574
DraIII	CACNNNGTG	1 cut(s)	668
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco32I	GATATC	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	170
EcoNI	CCTNNNNNAGG	1 cut(s)	707
EcoRI	GAATTC	1 cut(s)	653
EcoRV	GATATC	1 cut(s)	365
EcoT22I	ATGCAT	1 cut(s)	760
FaeI	CATG	7 cut(s)	21, 35, 311, 536, 587, 644, 762
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	7 cut(s)	17, 31, 307, 532, 583, 640, 758
FbaI	TGATCA	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	704
FspI	TGCGCA	1 cut(s)	164
GlaI	GCGC	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	649
HapII	CCGG	1 cut(s)	171
HhaI	GCGC	1 cut(s)	165
Hin1II	CATG	7 cut(s)	21, 35, 311, 536, 587, 644, 762
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	3 cut(s)	179, 637, 742
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	3 cut(s)	28, 529, 680
Hpy166II	GTNNAC	2 cut(s)	157, 502
Hpy188I	TCNGA	3 cut(s)	189, 237, 636
Hpy188III	TCNNGA	2 cut(s)	260, 338
Hpy8I	GTNNAC	2 cut(s)	157, 502
HpyAV	CCTTC	2 cut(s)	422, 495
HpyCH4III	ACNGT	4 cut(s)	56, 67, 617, 724
HpyCH4V	TGCA	5 cut(s)	4, 425, 508, 731, 758
HpyF10VI	GCNNNNNNNGC	1 cut(s)	755
HpyF3I	CTNAG	4 cut(s)	74, 396, 604, 738
Hsp92II	CATG	7 cut(s)	21, 35, 311, 536, 587, 644, 762
HspAI	GCGC	1 cut(s)	163
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	46, 232, 481, 574
LmnI	GCTCC	1 cut(s)	392
LpnPI	CCDG	8 cut(s)	86, 99, 177, 184, 282, 424, 601, 663
LweI	GCATC	2 cut(s)	256, 745
MaeI	CTAG	1 cut(s)	704
MaeIII	GTNAC	4 cut(s)	34, 61, 535, 718
MalI	GATC	4 cut(s)	48, 234, 483, 576
MboI	GATC	4 cut(s)	46, 232, 481, 574
MboII	GAAGA	8 cut(s)	5, 56, 139, 142, 152, 188, 275, 326
MfeI	CAATTG	1 cut(s)	732
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	4 cut(s)	341, 416, 653, 732
MlyI	GAGTC	1 cut(s)	631
MnlI	CCTC	6 cut(s)	21, 71, 456, 640, 703, 709
Mph1103I	ATGCAT	1 cut(s)	760
MseI	TTAA	3 cut(s)	609, 621, 674
MspA1I	CMGCKG	1 cut(s)	89
MspI	CCGG	1 cut(s)	171
MunI	CAATTG	1 cut(s)	732
Mva1269I	GAATGC	1 cut(s)	591
MwoI	GCNNNNNNNGC	1 cut(s)	755
NdeII	GATC	4 cut(s)	46, 232, 481, 574
NlaIII	CATG	7 cut(s)	21, 35, 311, 536, 587, 644, 762
NmuCI	GTSAC	4 cut(s)	34, 61, 535, 718
NsbI	TGCGCA	1 cut(s)	164
NsiI	ATGCAT	1 cut(s)	760
NspI	RCATGY	1 cut(s)	762
PaeI	GCATGC	1 cut(s)	762
PctI	GAATGC	1 cut(s)	591
PfeI	GAWTC	2 cut(s)	179, 742
PleI	GAGTC	1 cut(s)	631
PpsI	GAGTC	1 cut(s)	631
PstNI	CAGNNNCTG	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	5 cut(s)	110, 251, 450, 614, 692
RsaNI	GTAC	5 cut(s)	109, 250, 449, 613, 691
SaqAI	TTAA	3 cut(s)	609, 621, 674
Sau3AI	GATC	4 cut(s)	46, 232, 481, 574
ScaI	AGTACT	2 cut(s)	450, 614
SchI	GAGTC	1 cut(s)	631
SetI	ASST	7 cut(s)	13, 75, 91, 316, 327, 397, 720
SfaNI	GCATC	2 cut(s)	256, 745
SfcI	CTRYAG	1 cut(s)	444
SphI	GCATGC	1 cut(s)	762
Sse9I	AATT	4 cut(s)	341, 416, 653, 732
SspMI	CTAG	1 cut(s)	704
TaaI	ACNGT	4 cut(s)	56, 67, 617, 724
TaqI	TCGA	2 cut(s)	372, 577
TasI	AATT	4 cut(s)	341, 416, 653, 732
TatI	WGTACW	3 cut(s)	249, 448, 612
TfiI	GAWTC	2 cut(s)	179, 742
Tru1I	TTAA	3 cut(s)	609, 621, 674
Tru9I	TTAA	3 cut(s)	609, 621, 674
TscAI	CASTG	4 cut(s)	61, 427, 631, 727
TseFI	GTSAC	4 cut(s)	34, 61, 535, 718
Tsp45I	GTSAC	4 cut(s)	34, 61, 535, 718
TspDTI	ATGAA	3 cut(s)	20, 296, 646
TspGWI	ACGGA	1 cut(s)	320
TspRI	CASTG	4 cut(s)	61, 427, 631, 727
XagI	CCTNNNNNAGG	1 cut(s)	707
XapI	RAATTY	2 cut(s)	341, 653
XceI	RCATGY	1 cut(s)	762
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	1 cut(s)	704
ZrmI	AGTACT	2 cut(s)	450, 614
Zsp2I	ATGCAT	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.