Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

50627049 .. 50635939

Gene Structure 8891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00368910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCTAGCCTTAACTTCGATGACCAAGACGGTGTTTTGAGATCGATTACGGATGCACCGCCAACTCATTACACACTAAAAATAGAGTCACTTTCGATGCTGACCAAACATTCATTGGAGAAATATGAATCAGGGGAATTCGAAGCTGGAGGATACAAATGGAAACTTGTTTTCTATCCAAATGGAAACAAGAGCAAGAATGTCAAAGACCACGTTTCTCTCTACCTAGTAATGGCTGGAGCAAATACGTCCAAGATTCACTGGGGTGTACATGCTGTTTTCAGGTTGTTTTTGCTTGATCAGAACACCGGCAACTACTTGGTTTTTCAGGAACAAAAGGAGAGGCGCTTTCACGCAATGAAGCTTGATTGGGGTTTTGATCAGTTTCTCTCCGTCAAAACTTTTAATGAAGCTTCCAATGGATTTCTCATGGATGATACCTGTGTGTTTGGGGCAGAGGTCTTTGTTTCTAAGGAAAGAAGCACGGGCAAAGGAGAGTGTCTATCTATGGTGAAGGACGCTGTTATGTACAAACATGTTTGGAGGATTGACAGCTTCTCAAAGATAAACACAGACTGCCATGACTCCAAAACTTTCAGTTCTGGAGACCAGAAATGGAAGATACAACTCTATCCCAAGGGTAAAGGCATTGGAACGGGTAGTCATCTTTCCCTTTATTTGGCATTGGCTGATCCTACCGCTCTACCTCCTGGTACTAAAATATATACAGAGTTTACCCTGCGCATCCTTGAACAAACGCATCAAAGGCATCAGTTTGGTAAAGCAAGTTTCTGGTTAAGTGCCTCAGATCCAGAAAGGGGTTGGCAGAAATTCATTACACTAGGCTTTCTCAGTCAGACAACCATGGGGTTTCTGTTGAAGGATGCTTGCATTGTGGAGGCAGAGGTCACTGTCCATGGAATTTCTAATGCACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

312

Amino Acids

35.28

Weight (kDa)

7.72

Isoelectric Point (pI)

26.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	23 - 154	1.3e-37	MATH domain
MATH	PF00917	40 - 156	6.8e-11	MATH domain
TRAF-mep_MATH	PF21355	50 - 148	6.6e-07	TRAF/meprin, MATH domain
MATH_2	PF22486	178 - 303	5.8e-30	MATH domain
MATH	PF00917	183 - 305	1.6e-11	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	743
AccBSI	CCGCTC	1 cut(s)	701
AciI	CCGC	2 cut(s)	59, 699
AclWI	GGATC	2 cut(s)	686, 803
AcsI	RAATTY	3 cut(s)	137, 830, 921
AfaI	GTAC	3 cut(s)	270, 530, 715
AfiI	CCNNNNNNNGG	3 cut(s)	232, 679, 818
AflIII	ACRYGT	1 cut(s)	535
AgsI	TTSAA	2 cut(s)	752, 880
AjnI	CCWGG	1 cut(s)	709
AleI	CACNNNNGTG	1 cut(s)	264
AluBI	AGCT	4 cut(s)	146, 364, 413, 555
AluI	AGCT	4 cut(s)	146, 364, 413, 555
Alw26I	GTCTC	1 cut(s)	600
AlwI	GGATC	2 cut(s)	686, 803
ApoI	RAATTY	3 cut(s)	137, 830, 921
AspLEI	GCGC	2 cut(s)	348, 744
AsuHPI	GGTGA	1 cut(s)	523
AsuII	TTCGAA	1 cut(s)	141
AsuNHI	GCTAGC	1 cut(s)	5
BaeI	ACNNNNGTAYC	2 cut(s)	429, 462
BciT130I	CCWGG	1 cut(s)	711
BciVI	GTATCC	1 cut(s)	146
BclI	TGATCA	2 cut(s)	298, 379
BcoDI	GTCTC	1 cut(s)	600
BfaI	CTAG	3 cut(s)	6, 227, 842
BfmI	CTRYAG	1 cut(s)	935
BfoI	RGCGCY	1 cut(s)	349
BfuI	GTATCC	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	711
BmrFI	CCNGG	1 cut(s)	711
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	6 cut(s)	43, 87, 753, 769, 778, 874
BmtI	GCTAGC	1 cut(s)	9
BmuI	ACTGGG	1 cut(s)	271
BpmI	CTGGAG	3 cut(s)	168, 258, 624
Bpu14I	TTCGAA	1 cut(s)	141
Bsa29I	ATCGAT	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	600
BsaJI	CCNNGG	3 cut(s)	636, 864, 916
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 679, 818
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	266
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	711
BseCI	ATCGAT	1 cut(s)	44
BseDI	CCNNGG	3 cut(s)	636, 864, 916
BseGI	GGATG	4 cut(s)	58, 439, 744, 889
BseLI	CCNNNNNNNGG	3 cut(s)	232, 679, 818
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	2 cut(s)	819, 865
BseNI	ACTGG	1 cut(s)	266
BshVI	ATCGAT	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	309
BslI	CCNNNNNNNGG	3 cut(s)	232, 679, 818
BsmAI	GTCTC	1 cut(s)	600
Bso31I	GGTCTC	1 cut(s)	600
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1407I	TGTACA	2 cut(s)	268, 528
Bsp143I	GATC	5 cut(s)	41, 298, 379, 691, 808
Bsp19I	CCATGG	2 cut(s)	864, 916
BspACI	CCGC	2 cut(s)	59, 699
BspCNI	CTCAG	2 cut(s)	818, 864
BspDI	ATCGAT	1 cut(s)	44
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	2 cut(s)	686, 803
BspT104I	TTCGAA	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	600
BsrBI	CCGCTC	1 cut(s)	701
BsrDI	GCAATG	1 cut(s)	363
BsrFI	RCCGGY	1 cut(s)	308
BsrGI	TGTACA	2 cut(s)	268, 528
BsrI	ACTGG	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	3 cut(s)	636, 864, 916
BssMI	GATC	5 cut(s)	41, 298, 379, 691, 808
BssT1I	CCWWGG	3 cut(s)	636, 864, 916
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	2 cut(s)	32, 913
BstAUI	TGTACA	2 cut(s)	268, 528
BstBI	TTCGAA	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	7, 889
BstDEI	CTNAG	3 cut(s)	471, 805, 851
BstDSI	CCRYGG	2 cut(s)	864, 916
BstF5I	GGATG	4 cut(s)	58, 439, 744, 889
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	2 cut(s)	348, 744
BstKTI	GATC	5 cut(s)	44, 301, 382, 694, 811
BstMAI	GTCTC	1 cut(s)	600
BstMBI	GATC	5 cut(s)	41, 298, 379, 691, 808
BstMWI	GCNNNNNNNGC	1 cut(s)	766
BstNI	CCWGG	1 cut(s)	711
BstNSI	RCATGY	2 cut(s)	275, 539
BstSCI	CCNGG	1 cut(s)	709
BstSFI	CTRYAG	1 cut(s)	935
BstX2I	RGATCY	1 cut(s)	808
BstYI	RGATCY	1 cut(s)	808
Bsu15I	ATCGAT	1 cut(s)	44
BsuI	GTATCC	1 cut(s)	146
BsuTUI	ATCGAT	1 cut(s)	44
BtgI	CCRYGG	2 cut(s)	864, 916
BtsCI	GGATG	4 cut(s)	58, 439, 744, 889
BtsIMutI	CAGTG	2 cut(s)	259, 909
Cac8I	GCNNGC	2 cut(s)	7, 889
CfoI	GCGC	2 cut(s)	348, 744
Cfr10I	RCCGGY	1 cut(s)	308
ClaI	ATCGAT	1 cut(s)	44
CseI	GACGC	1 cut(s)	527
Csp6I	GTAC	3 cut(s)	269, 529, 714
CviAII	CATG	6 cut(s)	272, 430, 536, 581, 865, 917
CviJI	RGCY	9 cut(s)	5, 9, 146, 236, 364, 413, 555, 689, 846
CviKI_1	RGCY	9 cut(s)	5, 9, 146, 236, 364, 413, 555, 689, 846
CviQI	GTAC	3 cut(s)	269, 529, 714
DdeI	CTNAG	3 cut(s)	471, 805, 851
DpnI	GATC	5 cut(s)	43, 300, 381, 693, 810
DpnII	GATC	5 cut(s)	41, 298, 379, 691, 808
Eco130I	CCWWGG	3 cut(s)	636, 864, 916
Eco31I	GGTCTC	1 cut(s)	600
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	709
EcoT14I	CCWWGG	3 cut(s)	636, 864, 916
ErhI	CCWWGG	3 cut(s)	636, 864, 916
FaeI	CATG	6 cut(s)	275, 433, 539, 584, 868, 920
FatI	CATG	6 cut(s)	271, 429, 535, 580, 864, 916
FbaI	TGATCA	2 cut(s)	298, 379
FokI	GGATG	4 cut(s)	65, 446, 731, 896
FspBI	CTAG	3 cut(s)	6, 227, 842
FspI	TGCGCA	1 cut(s)	743
GlaI	GCGC	2 cut(s)	347, 743
GsuI	CTGGAG	3 cut(s)	168, 258, 624
HaeII	RGCGCY	1 cut(s)	349
HapII	CCGG	1 cut(s)	309
HgaI	GACGC	1 cut(s)	527
HhaI	GCGC	2 cut(s)	348, 744
Hin1II	CATG	6 cut(s)	275, 433, 539, 584, 868, 920
Hin6I	GCGC	2 cut(s)	346, 742
HinP1I	GCGC	2 cut(s)	346, 742
HindIII	AAGCTT	2 cut(s)	362, 411
HinfI	GANTC	4 cut(s)	86, 128, 256, 584
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	2 cut(s)	269, 735
Hpy188I	TCNGA	3 cut(s)	303, 808, 858
Hpy188III	TCNNGA	3 cut(s)	329, 603, 812
Hpy8I	GTNNAC	2 cut(s)	269, 735
HpyAV	CCTTC	2 cut(s)	508, 874
HpyCH4III	ACNGT	2 cut(s)	32, 913
HpyCH4IV	ACGT	2 cut(s)	213, 248
HpyCH4V	TGCA	3 cut(s)	56, 891, 932
HpyF10VI	GCNNNNNNNGC	1 cut(s)	766
HpyF3I	CTNAG	3 cut(s)	471, 805, 851
HpySE526I	ACGT	2 cut(s)	213, 248
Hsp92II	CATG	6 cut(s)	275, 433, 539, 584, 868, 920
HspAI	GCGC	2 cut(s)	346, 742
Ksp22I	TGATCA	2 cut(s)	298, 379
Kzo9I	GATC	5 cut(s)	41, 298, 379, 691, 808
LmnI	GCTCC	1 cut(s)	239
LweI	GCATC	6 cut(s)	43, 87, 753, 769, 778, 874
MaeI	CTAG	3 cut(s)	6, 227, 842
MaeII	ACGT	2 cut(s)	213, 248
MaeIII	GTNAC	2 cut(s)	87, 907
MalI	GATC	5 cut(s)	43, 300, 381, 693, 810
MbiI	CCGCTC	1 cut(s)	701
MboI	GATC	5 cut(s)	41, 298, 379, 691, 808
MboII	GAAGA	1 cut(s)	631
MflI	RGATCY	1 cut(s)	808
MluCI	AATT	3 cut(s)	137, 830, 921
MlyI	GAGTC	2 cut(s)	95, 578
MnlI	CCTC	8 cut(s)	143, 336, 451, 537, 717, 814, 892, 898
MseI	TTAA	3 cut(s)	12, 405, 797
MslI	CAYNNNNRTG	1 cut(s)	264
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	711
MvaI	CCWGG	1 cut(s)	711
MwoI	GCNNNNNNNGC	1 cut(s)	766
NcoI	CCATGG	2 cut(s)	864, 916
NdeII	GATC	5 cut(s)	41, 298, 379, 691, 808
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	6 cut(s)	275, 433, 539, 584, 868, 920
NmuCI	GTSAC	2 cut(s)	87, 907
NsbI	TGCGCA	1 cut(s)	743
NspI	RCATGY	2 cut(s)	275, 539
NspV	TTCGAA	1 cut(s)	141
OliI	CACNNNNGTG	1 cut(s)	264
PciI	ACATGT	1 cut(s)	535
PfeI	GAWTC	2 cut(s)	128, 256
PleI	GAGTC	2 cut(s)	94, 578
PpsI	GAGTC	2 cut(s)	94, 578
PscI	ACATGT	1 cut(s)	535
Psp6I	CCWGG	1 cut(s)	709
PspGI	CCWGG	1 cut(s)	709
PsuI	RGATCY	1 cut(s)	808
RsaI	GTAC	3 cut(s)	270, 530, 715
RsaNI	GTAC	3 cut(s)	269, 529, 714
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	3 cut(s)	12, 405, 797
Sau3AI	GATC	5 cut(s)	41, 298, 379, 691, 808
SchI	GAGTC	2 cut(s)	95, 578
ScrFI	CCNGG	1 cut(s)	711
SfaNI	GCATC	6 cut(s)	43, 87, 753, 769, 778, 874
SfcI	CTRYAG	1 cut(s)	935
SfuI	TTCGAA	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	264
Sse9I	AATT	3 cut(s)	137, 830, 921
SsiI	CCGC	2 cut(s)	59, 699
SspMI	CTAG	3 cut(s)	6, 227, 842
StyD4I	CCNGG	1 cut(s)	709
StyI	CCWWGG	3 cut(s)	636, 864, 916
TaaI	ACNGT	2 cut(s)	32, 913
TaiI	ACGT	2 cut(s)	216, 251
TaqI	TCGA	4 cut(s)	18, 44, 95, 141
TasI	AATT	3 cut(s)	137, 830, 921
TatI	WGTACW	2 cut(s)	268, 528
TfiI	GAWTC	2 cut(s)	128, 256
Tru1I	TTAA	3 cut(s)	12, 405, 797
Tru9I	TTAA	3 cut(s)	12, 405, 797
TscAI	CASTG	2 cut(s)	266, 916
TseFI	GTSAC	2 cut(s)	87, 907
Tsp45I	GTSAC	2 cut(s)	87, 907
TspDTI	ATGAA	5 cut(s)	102, 141, 374, 423, 823
TspGWI	ACGGA	2 cut(s)	65, 382
TspRI	CASTG	2 cut(s)	266, 916
XapI	RAATTY	3 cut(s)	137, 830, 921
XceI	RCATGY	2 cut(s)	275, 539
XcmI	CCANNNNNNNNNTGG	2 cut(s)	112, 819
XspI	CTAG	3 cut(s)	6, 227, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.