Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001734.1

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

50036 .. 51155

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001734.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgagttcatcgggacgctgcccggcatggttcatcgggacgctgcccggcatggtcatcggaggcgctgctccggtatggtttcatcgggacgctgcccggcatgttggctttgacattattgacacccgaaggtgctgttgtgaggagggctgcaacagaaaagagaaggtggtggagagcaatggaatgaggaggttgtctcttcacccaaacgaaacagaagaagggattggctacatctccctctacttggcaatagcggaaacagatacttatcctgaagggtgggaggtttatgccgactacaaattgtttgtgcttgatcatttgcagaagaagtacttaactgtccaagatgctgatggagatatgaaaaggtttcataaggaaaagactgagtggggatttgcaaagttacttacccttgaagctttcaaaaattgttctaatggatatcttgttgatgactgctgcgagtttggggcagaggtttttgtttatagtcgcaataacgaatgggaatctcttgccatggttaaggaacctagtgatggtactttccgttatgagatggaaaatttctcagcaaaagctcagccttcttattactcgaaagtgttcacagttggtgagcgaaattggtatgcacttcttccatctttttcacttctttctgctggcatggcatgcacaagcatatatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

236

Amino Acids

26.82

Weight (kDa)

5.23

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	580
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	2 cut(s)	344, 559
AfiI	CCNNNNNNNGG	2 cut(s)	253, 554
AgsI	TTSAA	2 cut(s)	431, 439
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
AluBI	AGCT	2 cut(s)	434, 596
AluI	AGCT	2 cut(s)	434, 596
Alw26I	GTCTC	1 cut(s)	207
ApeKI	GCWGC	6 cut(s)	18, 43, 68, 95, 153, 474
ApoI	RAATTY	1 cut(s)	580
Asp700I	GAANNNNTTC	1 cut(s)	620
AspLEI	GCGC	1 cut(s)	68
AsuC2I	CCSGG	3 cut(s)	23, 48, 100
AsuHPI	GGTGA	2 cut(s)	200, 644
BbvI	GCAGC	6 cut(s)	5, 30, 55, 82, 140, 461
BccI	CCATC	4 cut(s)	359, 548, 568, 667
BcgI	CGANNNNNNTGC	2 cut(s)	40, 74
BclI	TGATCA	1 cut(s)	325
BcnI	CCSGG	3 cut(s)	23, 48, 100
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	1 cut(s)	549
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	6 cut(s)	19, 44, 69, 96, 154, 475
BlpI	GCTNAGC	1 cut(s)	597
BlsI	GCNGC	6 cut(s)	20, 45, 70, 97, 155, 476
BmcAI	AGTACT	1 cut(s)	344
Bme1390I	CCNGG	3 cut(s)	23, 48, 100
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	3 cut(s)	23, 48, 100
BmsI	GCATC	1 cut(s)	349
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
Bpu1102I	GCTNAGC	1 cut(s)	597
BpuMI	CCSGG	3 cut(s)	23, 48, 100
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	534
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 554
Bse3DI	GCAATG	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	534
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	2 cut(s)	253, 554
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	3 cut(s)	390, 600, 611
BseRI	GAGGAG	2 cut(s)	161, 208
BseXI	GCAGC	6 cut(s)	5, 30, 55, 82, 140, 461
BsiSI	CCGG	4 cut(s)	23, 48, 74, 100
BslFI	GGGAC	3 cut(s)	27, 52, 104
BslI	CCNNNNNNNGG	2 cut(s)	253, 554
BsmAI	GTCTC	1 cut(s)	207
BsmFI	GGGAC	3 cut(s)	27, 52, 104
Bsp143I	GATC	1 cut(s)	325
Bsp1720I	GCTNAGC	1 cut(s)	597
Bsp19I	CCATGG	1 cut(s)	534
BspACI	CCGC	1 cut(s)	263
BspCNI	CTCAG	3 cut(s)	391, 599, 610
BspLI	GGNNCC	1 cut(s)	546
BsrDI	GCAATG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	534
Bst4CI	ACNGT	2 cut(s)	352, 628
Bst6I	CTCTTC	1 cut(s)	210
BstAPI	GCANNNNNTGC	1 cut(s)	690
BstC8I	GCNNGC	2 cut(s)	682, 691
BstDEI	CTNAG	3 cut(s)	399, 586, 597
BstDSI	CCRYGG	1 cut(s)	534
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	2 cut(s)	686, 690
BstNSI	RCATGY	2 cut(s)	107, 693
BstSCI	CCNGG	3 cut(s)	21, 46, 98
BstV1I	GCAGC	6 cut(s)	5, 30, 55, 82, 140, 461
BtgI	CCRYGG	1 cut(s)	534
Cac8I	GCNNGC	2 cut(s)	682, 691
CfoI	GCGC	1 cut(s)	68
CseI	GACGC	3 cut(s)	24, 49, 101
Csp6I	GTAC	2 cut(s)	343, 558
CviAII	CATG	6 cut(s)	27, 52, 104, 535, 685, 690
CviJI	RGCY	6 cut(s)	111, 153, 237, 434, 596, 601
CviKI_1	RGCY	6 cut(s)	111, 153, 237, 434, 596, 601
CviQI	GTAC	2 cut(s)	343, 558
DdeI	CTNAG	3 cut(s)	399, 586, 597
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	534
Eco32I	GATATC	1 cut(s)	458
Eco57I	CTGAAG	1 cut(s)	303
EcoRV	GATATC	1 cut(s)	458
EcoT14I	CCWWGG	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	6 cut(s)	30, 55, 107, 538, 688, 693
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	3 cut(s)	27, 52, 104
FatI	CATG	6 cut(s)	26, 51, 103, 534, 684, 689
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	6 cut(s)	19, 44, 69, 96, 154, 475
Fsp4HI	GCNGC	6 cut(s)	19, 44, 69, 96, 154, 475
FspBI	CTAG	1 cut(s)	549
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	6 cut(s)	19, 44, 69, 96, 154, 475
HaeII	RGCGCY	1 cut(s)	69
HapII	CCGG	4 cut(s)	23, 48, 74, 100
HgaI	GACGC	3 cut(s)	24, 49, 101
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	6 cut(s)	30, 55, 107, 538, 688, 693
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	432
HinfI	GANTC	1 cut(s)	524
HpaII	CCGG	4 cut(s)	23, 48, 74, 100
HphI	GGTGA	2 cut(s)	200, 644
Hpy166II	GTNNAC	1 cut(s)	624
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	4 cut(s)	12, 37, 89, 281
Hpy8I	GTNNAC	1 cut(s)	624
HpyAV	CCTTC	5 cut(s)	126, 163, 221, 278, 612
HpyCH4III	ACNGT	2 cut(s)	352, 628
HpyCH4V	TGCA	5 cut(s)	156, 334, 413, 650, 693
HpyF10VI	GCNNNNNNNGC	2 cut(s)	686, 690
HpyF3I	CTNAG	3 cut(s)	399, 586, 597
Hsp92II	CATG	6 cut(s)	30, 55, 107, 538, 688, 693
HspAI	GCGC	1 cut(s)	66
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	6 cut(s)	36, 61, 87, 113, 294, 666
Lsp1109I	GCAGC	6 cut(s)	5, 30, 55, 82, 140, 461
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	549
MaeIII	GTNAC	1 cut(s)	417
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	4 cut(s)	197, 236, 349, 647
MluCI	AATT	4 cut(s)	311, 442, 580, 640
MnlI	CCTC	8 cut(s)	56, 139, 142, 186, 189, 257, 286, 484
MroXI	GAANNNNTTC	1 cut(s)	620
MseI	TTAA	2 cut(s)	347, 540
MspI	CCGG	4 cut(s)	23, 48, 74, 100
MspR9I	CCNGG	3 cut(s)	23, 48, 100
MwoI	GCNNNNNNNGC	2 cut(s)	686, 690
NciI	CCSGG	3 cut(s)	23, 48, 100
NcoI	CCATGG	1 cut(s)	534
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	6 cut(s)	30, 55, 107, 538, 688, 693
NlaIV	GGNNCC	1 cut(s)	546
NspI	RCATGY	2 cut(s)	107, 693
PaeI	GCATGC	1 cut(s)	693
PdmI	GAANNNNTTC	1 cut(s)	620
PfeI	GAWTC	1 cut(s)	524
PkrI	GCNGC	6 cut(s)	20, 45, 70, 97, 155, 476
PspN4I	GGNNCC	1 cut(s)	546
RsaI	GTAC	2 cut(s)	344, 559
RsaNI	GTAC	2 cut(s)	343, 558
SaqAI	TTAA	2 cut(s)	347, 540
SatI	GCNGC	6 cut(s)	19, 44, 69, 96, 154, 475
Sau3AI	GATC	1 cut(s)	325
ScaI	AGTACT	1 cut(s)	344
ScrFI	CCNGG	3 cut(s)	23, 48, 100
SetI	ASST	9 cut(s)	137, 174, 200, 297, 383, 436, 495, 550, 598
SfaNI	GCATC	1 cut(s)	349
SphI	GCATGC	1 cut(s)	693
Sse9I	AATT	4 cut(s)	311, 442, 580, 640
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	1 cut(s)	549
StyD4I	CCNGG	3 cut(s)	21, 46, 98
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	2 cut(s)	352, 628
TaqI	TCGA	1 cut(s)	614
TasI	AATT	4 cut(s)	311, 442, 580, 640
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	2 cut(s)	347, 540
Tru9I	TTAA	2 cut(s)	347, 540
TseI	GCWGC	6 cut(s)	18, 43, 68, 95, 153, 474
TspDTI	ATGAA	4 cut(s)	22, 74, 374, 389
TspGWI	ACGGA	1 cut(s)	554
XapI	RAATTY	1 cut(s)	580
XceI	RCATGY	2 cut(s)	107, 693
XcmI	CCANNNNNNNNNTGG	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	620
XspI	CTAG	1 cut(s)	549
ZrmI	AGTACT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.