Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

11044272 .. 11045420

Gene Structure 1149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1142200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCTTGTCATCTCTTTCAACAAAATGGGTTTTCGACATCATATTCAGATTCACCTCCAACTCATTACACTCTAAAAATCGCGTCATTTTCATTGCTAACCAAACTTTTGGCGGACAAATATGAGTCGGGAGAATTTGAAGCTGCAGGATACAAATGGAAACTAGTGCTCTACCCGAATGGAAACAAGAAGAAAAATGTGGAAGGTTATATCTCTGTTTACTTGGAAATGGTTGGAGCTGATTCACTTCAGACTGGAAGCGAAGTATATGTTGATTTCAGGTTCTCTTTGCTTGATCAGAATAAAGGCATGTTCCTGGTTCTTCAAGATGCCAATAAAAAGGAAAAATGTTTCCATGGGATGATGCGTTATTCGGGATTTGATAAGCTTGTCACTCTTAAATCGTTTACTGATGCTTCCAACGGATATGTTGTTGACGATTCCTGTGTGATTGGAGCTGAGGTCTTCGTTTGTAAAGAAAGAAGAGCTGGCAATAGAGAGTCAATATCGATGATCAAGGATGCTGTTATGTGCAAGCATATTTGGAAGGTTGAGAACTTTTCAGAGTTAGGTACTGAATGCAGCAAATCAGAACCTTTCACTGCCGGAAGATTGATGGAAAGATATAGAGATGGGAAAAAGGATTTACACATGATCTTTATAGATTTGGAAAAAGCAAAGGAGTACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

231

Amino Acids

26.23

Weight (kDa)

6.54

Isoelectric Point (pI)

25.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	22 - 155	3.4e-33	MATH domain
MATH	PF00917	39 - 157	8.8e-10	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	83
AciI	CCGC	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	233
AfaI	GTAC	2 cut(s)	574, 686
AgsI	TTSAA	3 cut(s)	20, 140, 326
AhlI	ACTAGT	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	5 cut(s)	143, 239, 388, 458, 488
AluI	AGCT	5 cut(s)	143, 239, 388, 458, 488
Alw21I	GWGCWC	1 cut(s)	171
ApeKI	GCWGC	2 cut(s)	143, 582
ApoI	RAATTY	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	457
Bbv12I	GWGCWC	1 cut(s)	171
BbvCI	CCTCAGC	1 cut(s)	459
BbvI	GCAGC	2 cut(s)	130, 594
BccI	CCATC	2 cut(s)	610, 626
BciT130I	CCWGG	1 cut(s)	317
BciVI	GTATCC	1 cut(s)	143
BclI	TGATCA	2 cut(s)	295, 513
BcuI	ACTAGT	1 cut(s)	163
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	144
BfuI	GTATCC	1 cut(s)	143
BisI	GCNGC	2 cut(s)	144, 583
BlsI	GCNGC	2 cut(s)	145, 584
Bme1390I	CCNGG	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	4 cut(s)	319, 354, 403, 511
BpiI	GAAGAC	1 cut(s)	457
Bpu10I	CCTNAGC	1 cut(s)	459
Bsa29I	ATCGAT	1 cut(s)	509
BsaJI	CCNNGG	1 cut(s)	355
BsaXI	ACNNNNNCTCC	3 cut(s)	447, 477, 674
Bse1I	ACTGG	1 cut(s)	259
Bse3DI	GCAATG	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	317
BseCI	ATCGAT	1 cut(s)	509
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	2 cut(s)	366, 526
BseMI	GCAATG	1 cut(s)	92
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	1 cut(s)	259
BseXI	GCAGC	2 cut(s)	130, 594
Bsh1236I	CGCG	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	606
BsmI	GAATGC	1 cut(s)	584
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	295, 513, 654
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	451
BspDI	ATCGAT	1 cut(s)	509
BspFNI	CGCG	1 cut(s)	83
BspMAI	CTGCAG	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	3 cut(s)	295, 513, 654
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	317
Bst6I	CTCTTC	1 cut(s)	478
BstC8I	GCNNGC	2 cut(s)	490, 536
BstDEI	CTNAG	1 cut(s)	459
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	2 cut(s)	366, 526
BstFNI	CGCG	1 cut(s)	83
BstKTI	GATC	3 cut(s)	298, 516, 657
BstMBI	GATC	3 cut(s)	295, 513, 654
BstNI	CCWGG	1 cut(s)	317
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	144
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	130, 594
BstV2I	GAAGAC	1 cut(s)	457
BstXI	CCANNNNNNTGG	1 cut(s)	109
Bsu15I	ATCGAT	1 cut(s)	509
BsuI	GTATCC	1 cut(s)	143
BsuTUI	ATCGAT	1 cut(s)	509
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	366, 526
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	1 cut(s)	600
Cac8I	GCNNGC	2 cut(s)	490, 536
ClaI	ATCGAT	1 cut(s)	509
CseI	GACGC	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	573, 685
CviAII	CATG	3 cut(s)	310, 356, 652
CviJI	RGCY	6 cut(s)	5, 143, 239, 388, 458, 488
CviKI_1	RGCY	6 cut(s)	5, 143, 239, 388, 458, 488
CviQI	GTAC	2 cut(s)	573, 685
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	3 cut(s)	297, 515, 656
DpnII	GATC	3 cut(s)	295, 513, 654
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
EciI	GGCGGA	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	3 cut(s)	313, 359, 655
FatI	CATG	3 cut(s)	309, 355, 651
FbaI	TGATCA	2 cut(s)	295, 513
Fnu4HI	GCNGC	2 cut(s)	144, 583
FokI	GGATG	2 cut(s)	373, 533
Fsp4HI	GCNGC	2 cut(s)	144, 583
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	2 cut(s)	144, 583
HapII	CCGG	1 cut(s)	606
HgaI	GACGC	1 cut(s)	72
Hin1II	CATG	3 cut(s)	313, 359, 655
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	5 cut(s)	50, 125, 242, 440, 500
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	3 cut(s)	220, 408, 436
Hpy188I	TCNGA	5 cut(s)	49, 252, 300, 565, 592
Hpy188III	TCNNGA	3 cut(s)	129, 326, 375
Hpy8I	GTNNAC	3 cut(s)	220, 408, 436
HpyAV	CCTTC	2 cut(s)	197, 541
HpyCH4V	TGCA	3 cut(s)	146, 534, 582
HpyF3I	CTNAG	1 cut(s)	459
Hsp92II	CATG	3 cut(s)	313, 359, 655
Ksp22I	TGATCA	2 cut(s)	295, 513
Kzo9I	GATC	3 cut(s)	295, 513, 654
LguI	GCTCTTC	1 cut(s)	478
LmnI	GCTCC	2 cut(s)	236, 455
LpnPI	CCDG	8 cut(s)	132, 240, 265, 302, 329, 457, 474, 619
Lsp1109I	GCAGC	2 cut(s)	130, 594
LweI	GCATC	4 cut(s)	319, 354, 403, 511
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	3 cut(s)	297, 515, 656
MboI	GATC	3 cut(s)	295, 513, 654
MboII	GAAGA	5 cut(s)	202, 314, 457, 495, 621
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	1 cut(s)	134
MlyI	GAGTC	2 cut(s)	134, 509
MmeI	TCCRAC	3 cut(s)	83, 214, 444
MnlI	CCTC	2 cut(s)	66, 454
MseI	TTAA	1 cut(s)	399
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	1 cut(s)	317
Mva1269I	GAATGC	1 cut(s)	584
MvaI	CCWGG	1 cut(s)	317
MvnI	CGCG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	355
NdeII	GATC	3 cut(s)	295, 513, 654
NlaIII	CATG	3 cut(s)	313, 359, 655
NmuCI	GTSAC	1 cut(s)	391
NspI	RCATGY	1 cut(s)	313
PciSI	GCTCTTC	1 cut(s)	478
PctI	GAATGC	1 cut(s)	584
PfeI	GAWTC	3 cut(s)	50, 242, 440
PkrI	GCNGC	2 cut(s)	145, 584
PleI	GAGTC	2 cut(s)	133, 508
PpsI	GAGTC	2 cut(s)	133, 508
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PstI	CTGCAG	1 cut(s)	148
RsaI	GTAC	2 cut(s)	574, 686
RsaNI	GTAC	2 cut(s)	573, 685
SapI	GCTCTTC	1 cut(s)	478
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	2 cut(s)	144, 583
Sau3AI	GATC	3 cut(s)	295, 513, 654
SchI	GAGTC	2 cut(s)	134, 509
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	171
SfaNI	GCATC	4 cut(s)	319, 354, 403, 511
SfcI	CTRYAG	1 cut(s)	144
SpeI	ACTAGT	1 cut(s)	163
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	1 cut(s)	113
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	355
TaqI	TCGA	2 cut(s)	35, 509
TasI	AATT	1 cut(s)	134
TfiI	GAWTC	3 cut(s)	50, 242, 440
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	1 cut(s)	607
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	2 cut(s)	143, 582
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	1 cut(s)	81
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	607
XapI	RAATTY	1 cut(s)	134
XceI	RCATGY	1 cut(s)	313
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.