Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

24837414 .. 24839713

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGATATCCTTAACTCGGACAAAGAAGGCCTTTTCAGATCACTTTCAGATTCACTGCCAACTCATTGCAGACTTAATATAGAGTCGTTTTCGTTGCTAACCGAGTATCATGGAGTCGATGGTTATGAATCCAAAACGTTCGAAGCCGGAGGATACTTATGGAAACTGGTGCTGTACCCAAATGGAAACAAGAAGAAGAATGTAGAAGACTACATCTCTGTCTACTTGCGCATAGTAAAAAAAGATACACTTCGGACTGATTGGGGAGTATCTGTTGATTTCAGATTGTTTCTGCTTGATCAGAACAAGGGAAGGTACTTGGTTCTCGAAGGTGCTTTTACAAAGCAGAAGTGCATTCACGCGGGGATGCTTGATGTAGGTTTTGATAAGCTAATCAGTCTTAAAGAATTTACTGATGTTTCCAATGGATATCTCATCGATGACAAGTGTGTCTTTGGAGCTGAGGTCTTTGTTTGCGAAGAAATAAAAACAGGCCAAGCAGAGGGTATATCAAGGTTAAAGAGCCCTAATATGTACGAGCATGTTTGGGAGATTCAGAATTATTCTATCTTACCTCCTCCATGCCACCGGTCAGAACCATTCACCGTTGAAGGACAGAAGTGGATGATAGAACTCTATCCCGAGGGACATCCTCGCTCGGGGAAACATACTCATCTTTCTCTTTACTTGGGATTGGCTGATAAACAAAAAACTCCTGTCATCACTGGAGTATATGCAAAGTATACCTTACGCCTCAACCCCAACAAGAACAATGCTGGCTATCATGGTTCAGGTAAGGGTTGTTTTACCACAACCAGTGGCAAATATGGTTGGCACAAATTCATTCCATTGAGCGATTTACATCATTTTGTGAGGGACGATACTCTCAGAGTGGAAGCAGAGATCACTGTTGTTGGAATCGCTAAAGAATTTCCAAAGGCAAAGGACATTGTCCATACAACTGGGGAGGGTTTTTTCTCCTTCAATTCGACTGCACTTGTCATATCCTTGTCCACCGTTGTCATTGTAACTGCAACGTCAATCTTCTTCAAGTGGCGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

355

Amino Acids

40.06

Weight (kDa)

7.66

Isoelectric Point (pI)

28.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	24 - 156	2.2e-31	MATH domain
MATH	PF00917	41 - 158	2.8e-11	MATH domain
MATH_2	PF22486	181 - 302	3.3e-23	MATH domain
MATH	PF00917	199 - 304	1.6e-08	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	449
Acc16I	TGCGCA	1 cut(s)	230
AccI	GTMKAC	2 cut(s)	222, 743
AccII	CGCG	1 cut(s)	362
AciI	CCGC	1 cut(s)	362
AclI	AACGTT	1 cut(s)	137
AcsI	RAATTY	3 cut(s)	407, 839, 929
AfaI	GTAC	3 cut(s)	176, 317, 536
AfiI	CCNNNNNNNGG	3 cut(s)	16, 502, 659
AgeI	ACCGGT	1 cut(s)	588
AgsI	TTSAA	3 cut(s)	611, 985, 1051
AluBI	AGCT	2 cut(s)	391, 461
AluI	AGCT	2 cut(s)	391, 461
Ama87I	CYCGRG	2 cut(s)	641, 658
AoxI	GGCC	2 cut(s)	28, 493
ApoI	RAATTY	3 cut(s)	407, 839, 929
AsiGI	ACCGGT	1 cut(s)	588
AspLEI	GCGC	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	595
AsuII	TTCGAA	1 cut(s)	141
AvaI	CYCGRG	2 cut(s)	641, 658
BanII	GRGCYC	1 cut(s)	527
BbsI	GAAGAC	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	462
BccI	CCATC	1 cut(s)	113
BciVI	GTATCC	1 cut(s)	146
BclI	TGATCA	1 cut(s)	298
BfuI	GTATCC	1 cut(s)	146
BmeT110I	CYCGRG	2 cut(s)	641, 658
BmrI	ACTGGG	1 cut(s)	972
BmsI	GCATC	1 cut(s)	357
BmuI	ACTGGG	1 cut(s)	972
BpiI	GAAGAC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	747
Bpu10I	CCTNAGC	1 cut(s)	462
Bpu14I	TTCGAA	1 cut(s)	141
Bsa29I	ATCGAT	1 cut(s)	438
BsaBI	GATNNNNATC	1 cut(s)	861
BsaJI	CCNNGG	1 cut(s)	642
BsaWI	WCCGGW	1 cut(s)	588
BsaXI	ACNNNNNCTCC	4 cut(s)	258, 288, 450, 480
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 502, 659
Bse118I	RCCGGY	1 cut(s)	588
Bse1I	ACTGG	4 cut(s)	171, 730, 816, 967
Bse3DI	GCAATG	1 cut(s)	64
Bse8I	GATNNNNATC	1 cut(s)	861
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	642
BseGI	GGATG	3 cut(s)	372, 630, 649
BseJI	GATNNNNATC	1 cut(s)	861
BseLI	CCNNNNNNNGG	3 cut(s)	16, 502, 659
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	2 cut(s)	453, 901
BseNI	ACTGG	4 cut(s)	171, 730, 816, 967
BseRI	GAGGAG	1 cut(s)	567
BsgI	GTGCAG	1 cut(s)	978
Bsh1236I	CGCG	1 cut(s)	362
BshFI	GGCC	2 cut(s)	30, 495
BshTI	ACCGGT	1 cut(s)	588
BshVI	ATCGAT	1 cut(s)	438
BsiHKCI	CYCGRG	2 cut(s)	641, 658
BsiSI	CCGG	2 cut(s)	147, 589
BslFI	GGGAC	2 cut(s)	660, 890
BslI	CCNNNNNNNGG	3 cut(s)	16, 502, 659
BsmFI	GGGAC	2 cut(s)	660, 890
BsmI	GAATGC	1 cut(s)	354
BsnI	GGCC	2 cut(s)	30, 495
BsoBI	CYCGRG	2 cut(s)	641, 658
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp143I	GATC	3 cut(s)	38, 298, 903
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	2 cut(s)	30, 495
BspCNI	CTCAG	2 cut(s)	454, 900
BspDI	ATCGAT	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	362
BspT104I	TTCGAA	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	64
BsrFI	RCCGGY	1 cut(s)	588
BsrI	ACTGG	4 cut(s)	171, 730, 816, 967
BssAI	RCCGGY	1 cut(s)	588
BssECI	CCNNGG	1 cut(s)	642
BssMI	GATC	3 cut(s)	38, 298, 903
BssNAI	GTATAC	1 cut(s)	744
Bst1107I	GTATAC	1 cut(s)	744
Bst4CI	ACNGT	3 cut(s)	607, 910, 1018
BstBI	TTCGAA	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	778
BstDEI	CTNAG	2 cut(s)	462, 887
BstF5I	GGATG	3 cut(s)	372, 630, 649
BstFNI	CGCG	1 cut(s)	362
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	3 cut(s)	41, 301, 906
BstMBI	GATC	3 cut(s)	38, 298, 903
BstNSI	RCATGY	1 cut(s)	545
BstUI	CGCG	1 cut(s)	362
BstV2I	GAAGAC	1 cut(s)	213
BstXI	CCANNNNNNTGG	1 cut(s)	962
BstZ17I	GTATAC	1 cut(s)	744
Bsu15I	ATCGAT	1 cut(s)	438
BsuI	GTATCC	1 cut(s)	146
BsuRI	GGCC	2 cut(s)	30, 495
BsuTUI	ATCGAT	1 cut(s)	438
BtsCI	GGATG	3 cut(s)	372, 630, 649
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	4 cut(s)	53, 723, 823, 906
Cac8I	GCNNGC	1 cut(s)	778
CfoI	GCGC	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	588
ClaI	ATCGAT	1 cut(s)	438
Csp6I	GTAC	3 cut(s)	175, 316, 535
CspAI	ACCGGT	1 cut(s)	588
CviAII	CATG	4 cut(s)	110, 542, 582, 785
CviJI	RGCY	8 cut(s)	30, 146, 391, 461, 495, 525, 698, 780
CviKI_1	RGCY	8 cut(s)	30, 146, 391, 461, 495, 525, 698, 780
CviQI	GTAC	3 cut(s)	175, 316, 535
DdeI	CTNAG	2 cut(s)	462, 887
DpnI	GATC	3 cut(s)	40, 300, 905
DpnII	GATC	3 cut(s)	38, 298, 903
DrdI	GACNNNNNNGTC	1 cut(s)	449
DseDI	GACNNNNNNGTC	1 cut(s)	449
Eco147I	AGGCCT	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	527
Eco32I	GATATC	2 cut(s)	7, 431
Eco88I	CYCGRG	2 cut(s)	641, 658
EcoRV	GATATC	2 cut(s)	7, 431
EcoT38I	GRGCYC	1 cut(s)	527
FaeI	CATG	4 cut(s)	113, 545, 585, 788
FalI	AAGNNNNNCTT	8 cut(s)	15, 47, 234, 266, 437, 469, 731, 763
FaqI	GGGAC	2 cut(s)	660, 890
FatI	CATG	4 cut(s)	109, 541, 581, 784
FauI	CCCGC	1 cut(s)	355
FbaI	TGATCA	1 cut(s)	298
FblI	GTMKAC	2 cut(s)	222, 743
FokI	GGATG	3 cut(s)	379, 636, 637
FriOI	GRGCYC	1 cut(s)	527
FspI	TGCGCA	1 cut(s)	230
GlaI	GCGC	1 cut(s)	230
GsuI	CTGGAG	1 cut(s)	747
HaeIII	GGCC	2 cut(s)	30, 495
HapII	CCGG	2 cut(s)	147, 589
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	4 cut(s)	113, 545, 585, 788
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HinfI	GANTC	6 cut(s)	50, 83, 114, 128, 553, 918
HpaII	CCGG	2 cut(s)	147, 589
HphI	GGTGA	1 cut(s)	595
Hpy166II	GTNNAC	3 cut(s)	223, 744, 1014
Hpy188I	TCNGA	9 cut(s)	19, 38, 49, 255, 284, 303, 558, 595, 890
Hpy188III	TCNNGA	2 cut(s)	326, 641
Hpy8I	GTNNAC	3 cut(s)	223, 744, 1014
HpyAV	CCTTC	5 cut(s)	20, 306, 323, 605, 991
HpyCH4III	ACNGT	3 cut(s)	607, 910, 1018
HpyCH4IV	ACGT	2 cut(s)	137, 1037
HpyCH4V	TGCA	5 cut(s)	69, 354, 737, 995, 1034
HpyF3I	CTNAG	2 cut(s)	462, 887
HpySE526I	ACGT	2 cut(s)	137, 1037
Hsp92II	CATG	4 cut(s)	113, 545, 585, 788
HspAI	GCGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	38, 298, 903
LmnI	GCTCC	1 cut(s)	458
LweI	GCATC	1 cut(s)	357
MaeII	ACGT	2 cut(s)	137, 1037
MaeIII	GTNAC	1 cut(s)	1027
MalI	GATC	3 cut(s)	40, 300, 905
MboI	GATC	3 cut(s)	38, 298, 903
MboII	GAAGA	6 cut(s)	205, 208, 218, 491, 1036, 1039
MhlI	GDGCHC	1 cut(s)	527
MluCI	AATT	5 cut(s)	407, 559, 839, 929, 985
MlyI	GAGTC	2 cut(s)	92, 123
MmeI	TCCRAC	1 cut(s)	895
MseI	TTAA	4 cut(s)	12, 75, 402, 518
MspI	CCGG	2 cut(s)	147, 589
Mva1269I	GAATGC	1 cut(s)	354
MvnI	CGCG	1 cut(s)	362
NdeII	GATC	3 cut(s)	38, 298, 903
NlaIII	CATG	4 cut(s)	113, 545, 585, 788
NsbI	TGCGCA	1 cut(s)	230
NspI	RCATGY	1 cut(s)	545
NspV	TTCGAA	1 cut(s)	141
PceI	AGGCCT	1 cut(s)	30
PctI	GAATGC	1 cut(s)	354
PfeI	GAWTC	4 cut(s)	50, 128, 553, 918
PflFI	GACNNNGTC	1 cut(s)	950
PinAI	ACCGGT	1 cut(s)	588
PleI	GAGTC	2 cut(s)	91, 122
PpsI	GAGTC	2 cut(s)	91, 122
Psp1406I	AACGTT	1 cut(s)	137
PsyI	GACNNNGTC	1 cut(s)	950
RsaI	GTAC	3 cut(s)	176, 317, 536
RsaNI	GTAC	3 cut(s)	175, 316, 535
SaqAI	TTAA	4 cut(s)	12, 75, 402, 518
Sau3AI	GATC	3 cut(s)	38, 298, 903
SchI	GAGTC	2 cut(s)	92, 123
SduI	GDGCHC	1 cut(s)	527
SfaNI	GCATC	1 cut(s)	357
SfuI	TTCGAA	1 cut(s)	141
Sse9I	AATT	5 cut(s)	407, 559, 839, 929, 985
SseBI	AGGCCT	1 cut(s)	30
SsiI	CCGC	1 cut(s)	362
StuI	AGGCCT	1 cut(s)	30
TaaI	ACNGT	3 cut(s)	607, 910, 1018
TaiI	ACGT	2 cut(s)	140, 1040
TaqI	TCGA	5 cut(s)	117, 141, 327, 438, 989
TasI	AATT	5 cut(s)	407, 559, 839, 929, 985
TfiI	GAWTC	4 cut(s)	50, 128, 553, 918
Tru1I	TTAA	4 cut(s)	12, 75, 402, 518
Tru9I	TTAA	4 cut(s)	12, 75, 402, 518
TscAI	CASTG	4 cut(s)	60, 730, 823, 913
TspDTI	ATGAA	2 cut(s)	141, 832
TspRI	CASTG	4 cut(s)	60, 730, 823, 913
Tth111I	GACNNNGTC	1 cut(s)	950
XapI	RAATTY	3 cut(s)	407, 839, 929
XceI	RCATGY	1 cut(s)	545
XmiI	GTMKAC	2 cut(s)	222, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.