Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

55027945 .. 55030040

Gene Structure 2096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG292100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGGTAGCCATGGATGTGACCAAAATGGGGTTCTCAGATCCTATTCAGGTTCACCACCGAGCCATTACAGTCTCAAAGTAGACTCGTTTTCATTCATGACTGAAAATTCAGTGGATGGTTATGAAGCAGAGGAGTTTGCAGCTGGAGGGCACAAATGGAAATTGGTGATATACCCAAATGGAAACAAGAAAAGAAATGTGGAAGGCCGCGTCTCTCTCTACTTGGAAATGGCTGGAGAATATTCACTTCAGGGTGATTGGGAGATATATGTGGATTTTAGGTTGTTTTTACTTGATCAGAAAAGGGGCAAGTACTTGGTTCTTGAAGATGCTTTCGCAAAGAAAAATTGCTTTCATCGGGAAATGCTGCGCTTGCCTGGTTTTGATAGGCTTATGCCTCTTGAAGAGTTTACTAATGCCTCCAATGGATATGTAGTTGATGACACCTGCGTGTTTGGTGCTGAGGTCTTTGTTTGTAAAGAAAGAACAAAAGGCAAAAGAGAGCGTTTATTAACGACAAACAATGCAGTTATGTACAGGCAGGTTTGGAAGGTTGAGAACTTTTCAAAGCTAGATGATCCATTCTATAAGTCAGAACCATTCGTTGCTGGAAACCAGAAATGGGAGATACAGTTCTATCCCAAGGGAATTGCCCACGGAATGGGGACTCATCTTTCTCTTTACTTGGCATTATTTGATTTTAAACCAACTCCTCCTGTGTTCAAGAAATTTGCAGGGTTTTGCCTGCGTATTGTAGATCGAAAGCATGCCAATCATAAGACATGGTCAGGTAAACACTGTTTCAGTGCCACGTCTTCCTCTTGGGGTTTGCCTAAGTTCATTAAGCACTTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

285

Amino Acids

32.83

Weight (kDa)

8.96

Isoelectric Point (pI)

27.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	22 - 156	3.1e-30	MATH domain
MATH	PF00917	30 - 158	1.3e-10	MATH domain
MATH_2	PF22486	182 - 283	2.1e-20	MATH domain
MATH	PF00917	185 - 282	3.8e-06	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	455
Acc36I	ACCTGC	2 cut(s)	455, 532
AccB7I	CCANNNNNTGG	1 cut(s)	661
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	1 cut(s)	210
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	2 cut(s)	33, 572
AcsI	RAATTY	2 cut(s)	106, 728
AcuI	CTGAAG	1 cut(s)	233
AfaI	GTAC	2 cut(s)	314, 536
AfiI	CCNNNNNNNGG	3 cut(s)	28, 622, 661
AgsI	TTSAA	4 cut(s)	326, 404, 567, 724
AjiI	CACGTC	1 cut(s)	813
AjnI	CCWGG	1 cut(s)	376
AjuI	GAANNNNNNNTTGG	2 cut(s)	15, 47
AleI	CACNNNNGTG	1 cut(s)	449
AloI	GAACNNNNNNTCC	2 cut(s)	617, 649
AluBI	AGCT	2 cut(s)	143, 571
AluI	AGCT	2 cut(s)	143, 571
Alw26I	GTCTC	2 cut(s)	77, 217
AlwI	GGATC	2 cut(s)	33, 572
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	2 cut(s)	140, 367
ApoI	RAATTY	2 cut(s)	106, 728
AspLEI	GCGC	1 cut(s)	372
AsuHPI	GGTGA	3 cut(s)	45, 178, 266
BaeGI	GKGCMC	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	807
BbvCI	CCTCAGC	1 cut(s)	462
BbvI	GCAGC	2 cut(s)	152, 354
BccI	CCATC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	378
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	2 cut(s)	77, 217
BfaI	CTAG	1 cut(s)	572
BfuAI	ACCTGC	2 cut(s)	455, 532
BisI	GCNGC	3 cut(s)	141, 208, 368
BlsI	GCNGC	3 cut(s)	142, 209, 369
BmcAI	AGTACT	1 cut(s)	314
Bme1390I	CCNGG	1 cut(s)	378
BmgBI	CACGTC	1 cut(s)	813
BmrFI	CCNGG	1 cut(s)	378
BmsI	GCATC	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	807
BpmI	CTGGAG	2 cut(s)	165, 255
Bpu10I	CCTNAGC	1 cut(s)	462
BsaJI	CCNNGG	3 cut(s)	10, 642, 655
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 622, 661
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	3 cut(s)	10, 642, 655
BseGI	GGATG	2 cut(s)	20, 121
BseLI	CCNNNNNNNGG	3 cut(s)	28, 622, 661
BseMII	CTCAG	2 cut(s)	49, 453
BseRI	GAGGAG	2 cut(s)	146, 702
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	152, 354
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	679
BslI	CCNNNNNNNGG	3 cut(s)	28, 622, 661
BsmAI	GTCTC	2 cut(s)	77, 217
BsmBI	CGTCTC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	679
BsnI	GGCC	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp1407I	TGTACA	1 cut(s)	534
Bsp143I	GATC	4 cut(s)	38, 295, 577, 757
Bsp19I	CCATGG	1 cut(s)	10
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	2 cut(s)	48, 454
BspFNI	CGCG	1 cut(s)	210
BspHI	TCATGA	1 cut(s)	96
BspMI	ACCTGC	2 cut(s)	455, 532
BspPI	GGATC	2 cut(s)	33, 572
BsrGI	TGTACA	1 cut(s)	534
BssECI	CCNNGG	3 cut(s)	10, 642, 655
BssMI	GATC	4 cut(s)	38, 295, 577, 757
BssT1I	CCWWGG	2 cut(s)	10, 642
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	3 cut(s)	71, 633, 800
Bst6I	CTCTTC	1 cut(s)	399
BstAUI	TGTACA	1 cut(s)	534
BstC8I	GCNNGC	3 cut(s)	374, 746, 768
BstDEI	CTNAG	3 cut(s)	35, 462, 834
BstDSI	CCRYGG	2 cut(s)	10, 655
BstF5I	GGATG	2 cut(s)	20, 121
BstFNI	CGCG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	4 cut(s)	41, 298, 580, 760
BstMAI	GTCTC	2 cut(s)	77, 217
BstMBI	GATC	4 cut(s)	38, 295, 577, 757
BstMWI	GCNNNNNNNGC	1 cut(s)	373
BstNI	CCWGG	1 cut(s)	378
BstNSI	RCATGY	1 cut(s)	770
BstSCI	CCNGG	1 cut(s)	376
BstSLI	GKGCMC	1 cut(s)	153
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	152, 354
BstV2I	GAAGAC	1 cut(s)	807
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	207
BtgI	CCRYGG	2 cut(s)	10, 655
BtrI	CACGTC	1 cut(s)	813
BtsCI	GGATG	2 cut(s)	20, 121
BtsIMutI	CAGTG	3 cut(s)	117, 796, 811
BveI	ACCTGC	2 cut(s)	455, 532
Cac8I	GCNNGC	3 cut(s)	374, 746, 768
CciI	TCATGA	1 cut(s)	96
CfoI	GCGC	1 cut(s)	372
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	2 cut(s)	313, 535
CviAII	CATG	4 cut(s)	11, 97, 767, 783
CviJI	RGCY	7 cut(s)	9, 63, 143, 207, 233, 391, 571
CviKI_1	RGCY	7 cut(s)	9, 63, 143, 207, 233, 391, 571
CviQI	GTAC	2 cut(s)	313, 535
DdeI	CTNAG	3 cut(s)	35, 462, 834
DpnI	GATC	4 cut(s)	40, 297, 579, 759
DpnII	GATC	4 cut(s)	38, 295, 577, 757
DraI	TTTAAA	1 cut(s)	703
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco130I	CCWWGG	2 cut(s)	10, 642
Eco57I	CTGAAG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	2 cut(s)	10, 642
ErhI	CCWWGG	2 cut(s)	10, 642
Esp3I	CGTCTC	1 cut(s)	217
FaeI	CATG	4 cut(s)	14, 100, 770, 786
FaqI	GGGAC	1 cut(s)	679
FatI	CATG	4 cut(s)	10, 96, 766, 782
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	3 cut(s)	141, 208, 368
FokI	GGATG	2 cut(s)	27, 128
Fsp4HI	GCNGC	3 cut(s)	141, 208, 368
FspBI	CTAG	1 cut(s)	572
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	3 cut(s)	141, 208, 368
GsuI	CTGGAG	2 cut(s)	165, 255
HaeIII	GGCC	1 cut(s)	207
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	4 cut(s)	14, 100, 770, 786
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HinfI	GANTC	2 cut(s)	83, 667
HphI	GGTGA	3 cut(s)	45, 178, 266
Hpy166II	GTNNAC	4 cut(s)	53, 82, 411, 794
Hpy188I	TCNGA	3 cut(s)	38, 300, 595
Hpy188III	TCNNGA	5 cut(s)	97, 323, 359, 401, 724
Hpy8I	GTNNAC	4 cut(s)	53, 82, 411, 794
HpyAV	CCTTC	2 cut(s)	197, 544
HpyCH4III	ACNGT	3 cut(s)	71, 633, 800
HpyCH4IV	ACGT	1 cut(s)	812
HpyCH4V	TGCA	3 cut(s)	140, 527, 734
HpyF10VI	GCNNNNNNNGC	1 cut(s)	373
HpyF3I	CTNAG	3 cut(s)	35, 462, 834
HpySE526I	ACGT	1 cut(s)	812
Hsp92II	CATG	4 cut(s)	14, 100, 770, 786
HspAI	GCGC	1 cut(s)	370
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	4 cut(s)	38, 295, 577, 757
Lsp1109I	GCAGC	2 cut(s)	152, 354
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	1 cut(s)	812
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	4 cut(s)	40, 297, 579, 759
MboI	GATC	4 cut(s)	38, 295, 577, 757
MboII	GAAGA	3 cut(s)	338, 416, 807
MflI	RGATCY	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	5 cut(s)	106, 161, 346, 648, 728
MlyI	GAGTC	2 cut(s)	77, 661
MnlI	CCTC	7 cut(s)	124, 140, 408, 430, 457, 723, 829
MseI	TTAA	3 cut(s)	512, 702, 843
MslI	CAYNNNNRTG	2 cut(s)	15, 449
MspA1I	CMGCKG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	373
NcoI	CCATGG	1 cut(s)	10
NdeII	GATC	4 cut(s)	38, 295, 577, 757
NlaIII	CATG	4 cut(s)	14, 100, 770, 786
NmuCI	GTSAC	1 cut(s)	17
NspI	RCATGY	1 cut(s)	770
OliI	CACNNNNGTG	1 cut(s)	449
PaeI	GCATGC	1 cut(s)	770
PagI	TCATGA	1 cut(s)	96
PaqCI	CACCTGC	1 cut(s)	455
PflFI	GACNNNGTC	1 cut(s)	784
PflMI	CCANNNNNTGG	1 cut(s)	661
PkrI	GCNGC	3 cut(s)	142, 209, 369
PleI	GAGTC	2 cut(s)	77, 661
PpsI	GAGTC	2 cut(s)	77, 661
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	38
PsyI	GACNNNGTC	1 cut(s)	784
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	2 cut(s)	314, 536
RsaNI	GTAC	2 cut(s)	313, 535
RseI	CAYNNNNRTG	2 cut(s)	15, 449
SaqAI	TTAA	3 cut(s)	512, 702, 843
SatI	GCNGC	3 cut(s)	141, 208, 368
Sau3AI	GATC	4 cut(s)	38, 295, 577, 757
ScaI	AGTACT	1 cut(s)	314
SchI	GAGTC	2 cut(s)	77, 661
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	153
SfaNI	GCATC	1 cut(s)	319
SmiMI	CAYNNNNRTG	2 cut(s)	15, 449
SphI	GCATGC	1 cut(s)	770
Sse9I	AATT	5 cut(s)	106, 161, 346, 648, 728
SsiI	CCGC	1 cut(s)	208
SspI	AATATT	1 cut(s)	242
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	2 cut(s)	10, 642
TaaI	ACNGT	3 cut(s)	71, 633, 800
TaiI	ACGT	1 cut(s)	815
TaqI	TCGA	1 cut(s)	760
TasI	AATT	5 cut(s)	106, 161, 346, 648, 728
TatI	WGTACW	2 cut(s)	312, 534
TauI	GCSGC	1 cut(s)	210
Tru1I	TTAA	3 cut(s)	512, 702, 843
Tru9I	TTAA	3 cut(s)	512, 702, 843
TscAI	CASTG	3 cut(s)	117, 803, 811
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	2 cut(s)	140, 367
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	5 cut(s)	81, 85, 138, 344, 829
TspGWI	ACGGA	1 cut(s)	672
TspRI	CASTG	3 cut(s)	117, 803, 811
Tth111I	GACNNNGTC	1 cut(s)	784
Van91I	CCANNNNNTGG	1 cut(s)	661
XapI	RAATTY	2 cut(s)	106, 728
XceI	RCATGY	1 cut(s)	770
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	1 cut(s)	572
ZrmI	AGTACT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.