Rorug04G0208500

ribonuclease H protein At1g65750-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000185
Physical Location & Seq
Reverse (-)
36315034 .. 36316635
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0208500.1

Sequence Viewer

Length: 915 bp
ATGAAGATGCTGGTAAAACTTCATATATATTTGATGATTTTCCAAGCACAGAAGCACAAAAACCGTTCCGGGAAGATCACCGAGCACAAAATACTTGTTACGAGAGTGGGAATGGAGTCATTGCTTTTGGATGTCCCTTTCGTATGCAAGTCATGGTACAAAGCAACCCTCGACCCCTCATGCTGGCAATATCTCACATTTCCTGATCTTACTGTTGATCGTTATCTTGACTTTGATGAAGACGGATATTGGTGTACCCTTATTAAAAGATTTGTAGATGAGTATCGACTTGATGAGAGCCGTTTCTCGGTGACTGCATTTGTTAAGTTTATAATCAGTCGTAGCAAAGGAAAGGCTATTTATCTCAGGCTATCTCCATGTGCTTCAGAAGATGTCTTGAAAAATGCTGCAGATGAGTGTCCTGCCTTAAAGCTTCTTTCATTGCCCAGCCGTTTAGTGAACCGTAATGCAAGCATAATTCAAGAAATAATTGGAAAGTGGACAAATTTGGAGTACTTGGTATTGGGAAGCAGCTATAATTTGGAAAACTTCCTTGGACAGATCTCCATTCACTGCAAGAACTTGTGTCTTTTGAGTGTGGCTAATGCAGATATTGGTAAAGATGAAGCAATGGCAATTGTTAACTTGCTGCCTAAGCTTAAGCAATTGATCTTGAAGAAAGCAAATATTGATCGGGATGATCTTGTGACGCTACTGCAGGGCTGCAACGAGCTTGTGCTTTTGGATGTCAGCAATTGTATAGGTTTTGATGAGGAAGATGAAGAAATAGCAAAGCTTGCTTCTCATATTGCTAATTTCAGCTCTCAGGGTTCTACACTATATGATGATGATGATTACTATGAGGGACATATTTCCTGGGATGAAGATATTTATGGATACGGTTCCGATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

304

Amino Acids

34.75

Weight (kDa)

5.08

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 332
AcsI RAATTY 1 cut(s) 505
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 3 cut(s) 158, 256, 515
AfiI CCNNNNNNNGG 2 cut(s) 183, 307
AflII CTTAAG 1 cut(s) 659
AgsI TTSAA 3 cut(s) 400, 482, 676
AjnI CCWGG 1 cut(s) 875
AjuI GAANNNNNNNTTGG 2 cut(s) 537, 569
AluBI AGCT 6 cut(s) 433, 534, 658, 733, 796, 822
AluI AGCT 6 cut(s) 433, 534, 658, 733, 796, 822
Alw21I GWGCWC 1 cut(s) 87
ApeKI GCWGC 4 cut(s) 407, 531, 649, 723
ApoI RAATTY 1 cut(s) 505
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 2 cut(s) 70, 322
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 4 cut(s) 394, 543, 636, 710
BceAI ACGGC 2 cut(s) 285, 435
BciT130I CCWGG 1 cut(s) 877
BciVI GTATCC 1 cut(s) 890
BcnI CCSGG 1 cut(s) 70
BfmI CTRYAG 2 cut(s) 408, 716
BfrI CTTAAG 1 cut(s) 659
BfuI GTATCC 1 cut(s) 890
BglII AGATCT 1 cut(s) 561
BisI GCNGC 4 cut(s) 408, 532, 650, 724
BlsI GCNGC 4 cut(s) 409, 533, 651, 725
BmcAI AGTACT 1 cut(s) 515
Bme1390I CCNGG 2 cut(s) 70, 877
BmiI GGNNCC 1 cut(s) 904
BmrFI CCNGG 2 cut(s) 70, 877
BpiI GAAGAC 1 cut(s) 246
Bpu10I CCTNAGC 1 cut(s) 654
BpuMI CCSGG 1 cut(s) 70
BsaBI GATNNNNATC 2 cut(s) 222, 282
BsaJI CCNNGG 2 cut(s) 553, 876
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 307
Bse3DI GCAATG 3 cut(s) 119, 440, 636
Bse8I GATNNNNATC 2 cut(s) 222, 282
BseBI CCWGG 1 cut(s) 877
BseDI CCNNGG 2 cut(s) 553, 876
BseGI GGATG 4 cut(s) 136, 703, 751, 886
BseJI GATNNNNATC 2 cut(s) 222, 282
BseLI CCNNNNNNNGG 2 cut(s) 183, 307
BseMI GCAATG 3 cut(s) 119, 440, 636
BseMII CTCAG 2 cut(s) 379, 839
BseXI GCAGC 4 cut(s) 394, 543, 636, 710
BseYI CCCAGC 1 cut(s) 446
BsiHKAI GWGCWC 1 cut(s) 87
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 2 cut(s) 119, 879
BslI CCNNNNNNNGG 2 cut(s) 183, 307
BsmFI GGGAC 2 cut(s) 119, 879
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 7 cut(s) 75, 205, 217, 561, 669, 691, 700
BspCNI CTCAG 2 cut(s) 378, 838
BspLI GGNNCC 1 cut(s) 904
BspMAI CTGCAG 2 cut(s) 412, 720
BspTI CTTAAG 1 cut(s) 659
BsrDI GCAATG 3 cut(s) 119, 440, 636
BssECI CCNNGG 2 cut(s) 553, 876
BssMI GATC 7 cut(s) 75, 205, 217, 561, 669, 691, 700
BssT1I CCWWGG 1 cut(s) 553
Bst2UI CCWGG 1 cut(s) 877
Bst4CI ACNGT 4 cut(s) 65, 214, 464, 902
BstAFI CTTAAG 1 cut(s) 659
BstAPI GCANNNNNTGC 1 cut(s) 797
BstC8I GCNNGC 3 cut(s) 185, 472, 798
BstDEI CTNAG 3 cut(s) 365, 654, 825
BstF5I GGATG 4 cut(s) 136, 703, 751, 886
BstKTI GATC 7 cut(s) 78, 208, 220, 564, 672, 694, 703
BstMBI GATC 7 cut(s) 75, 205, 217, 561, 669, 691, 700
BstMWI GCNNNNNNNGC 2 cut(s) 655, 797
BstNI CCWGG 1 cut(s) 877
BstSCI CCNGG 2 cut(s) 68, 875
BstSFI CTRYAG 2 cut(s) 408, 716
BstV1I GCAGC 4 cut(s) 394, 543, 636, 710
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 561
BstYI RGATCY 1 cut(s) 561
BsuI GTATCC 1 cut(s) 890
BtsCI GGATG 4 cut(s) 136, 703, 751, 886
BtsI GCAGTG 1 cut(s) 571
BtsIMutI CAGTG 1 cut(s) 571
Cac8I GCNNGC 3 cut(s) 185, 472, 798
CseI GACGC 1 cut(s) 718
Csp6I GTAC 3 cut(s) 157, 255, 514
CviAII CATG 3 cut(s) 153, 180, 378
CviQI GTAC 3 cut(s) 157, 255, 514
DdeI CTNAG 3 cut(s) 365, 654, 825
DpnI GATC 7 cut(s) 77, 207, 219, 563, 671, 693, 702
DpnII GATC 7 cut(s) 75, 205, 217, 561, 669, 691, 700
Eco130I CCWWGG 1 cut(s) 553
Eco57I CTGAAG 1 cut(s) 369
EcoRII CCWGG 1 cut(s) 875
EcoT14I CCWWGG 1 cut(s) 553
ErhI CCWWGG 1 cut(s) 553
FaeI CATG 3 cut(s) 156, 183, 381
FaqI GGGAC 2 cut(s) 119, 879
FatI CATG 3 cut(s) 152, 179, 377
Fnu4HI GCNGC 4 cut(s) 408, 532, 650, 724
FokI GGATG 4 cut(s) 143, 710, 758, 893
Fsp4HI GCNGC 4 cut(s) 408, 532, 650, 724
GluI GCNGC 4 cut(s) 408, 532, 650, 724
GsaI CCCAGC 1 cut(s) 450
HapII CCGG 1 cut(s) 69
HgaI GACGC 1 cut(s) 718
Hin1II CATG 3 cut(s) 156, 183, 381
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HindIII AAGCTT 3 cut(s) 431, 656, 794
HinfI GANTC 1 cut(s) 116
HpaI GTTAAC 1 cut(s) 643
HpaII CCGG 1 cut(s) 69
HphI GGTGA 2 cut(s) 70, 322
Hpy166II GTNNAC 4 cut(s) 255, 460, 501, 643
Hpy188I TCNGA 2 cut(s) 388, 907
Hpy188III TCNNGA 6 cut(s) 203, 227, 397, 482, 673, 695
Hpy8I GTNNAC 4 cut(s) 255, 460, 501, 643
HpyCH4III ACNGT 4 cut(s) 65, 214, 464, 902
HpyCH4V TGCA 8 cut(s) 147, 317, 410, 470, 576, 608, 718, 726
HpyF10VI GCNNNNNNNGC 2 cut(s) 655, 797
HpyF3I CTNAG 3 cut(s) 365, 654, 825
Hsp92II CATG 3 cut(s) 156, 183, 381
KspAI GTTAAC 1 cut(s) 643
Kzo9I GATC 7 cut(s) 75, 205, 217, 561, 669, 691, 700
Lsp1109I GCAGC 4 cut(s) 394, 543, 636, 710
MaeIII GTNAC 3 cut(s) 97, 310, 706
MalI GATC 7 cut(s) 77, 207, 219, 563, 671, 693, 702
MboI GATC 7 cut(s) 75, 205, 217, 561, 669, 691, 700
MboII GAAGA 8 cut(s) 16, 85, 251, 401, 688, 788, 794, 896
MfeI CAATTG 3 cut(s) 636, 665, 754
MflI RGATCY 1 cut(s) 561
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 8 cut(s) 477, 489, 505, 538, 636, 665, 754, 814
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 4 cut(s) 179, 187, 766, 856
MseI TTAA 5 cut(s) 264, 324, 428, 642, 660
MspCI CTTAAG 1 cut(s) 659
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 2 cut(s) 70, 877
MunI CAATTG 3 cut(s) 636, 665, 754
MvaI CCWGG 1 cut(s) 877
MwoI GCNNNNNNNGC 2 cut(s) 655, 797
NciI CCSGG 1 cut(s) 70
NdeII GATC 7 cut(s) 75, 205, 217, 561, 669, 691, 700
NlaIII CATG 3 cut(s) 156, 183, 381
NlaIV GGNNCC 1 cut(s) 904
NmuCI GTSAC 2 cut(s) 310, 706
PfoI TCCNGGA 1 cut(s) 68
PkrI GCNGC 4 cut(s) 409, 533, 651, 725
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PsiI TTATAA 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 875
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 1 cut(s) 875
PspN4I GGNNCC 1 cut(s) 904
PstI CTGCAG 2 cut(s) 412, 720
PsuI RGATCY 1 cut(s) 561
RsaI GTAC 3 cut(s) 158, 256, 515
RsaNI GTAC 3 cut(s) 157, 255, 514
SaqAI TTAA 5 cut(s) 264, 324, 428, 642, 660
SatI GCNGC 4 cut(s) 408, 532, 650, 724
Sau3AI GATC 7 cut(s) 75, 205, 217, 561, 669, 691, 700
ScaI AGTACT 1 cut(s) 515
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 2 cut(s) 70, 877
SduI GDGCHC 1 cut(s) 87
SetI ASST 7 cut(s) 435, 536, 660, 735, 766, 798, 824
SfcI CTRYAG 2 cut(s) 408, 716
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
Sse9I AATT 8 cut(s) 477, 489, 505, 538, 636, 665, 754, 814
SspI AATATT 1 cut(s) 688
StyD4I CCNGG 2 cut(s) 68, 875
StyI CCWWGG 1 cut(s) 553
TaaI ACNGT 4 cut(s) 65, 214, 464, 902
TaqI TCGA 2 cut(s) 171, 286
TasI AATT 8 cut(s) 477, 489, 505, 538, 636, 665, 754, 814
TatI WGTACW 1 cut(s) 513
Tru1I TTAA 5 cut(s) 264, 324, 428, 642, 660
Tru9I TTAA 5 cut(s) 264, 324, 428, 642, 660
TscAI CASTG 1 cut(s) 578
TseFI GTSAC 2 cut(s) 310, 706
TseI GCWGC 4 cut(s) 407, 531, 649, 723
Tsp45I GTSAC 2 cut(s) 310, 706
TspDTI ATGAA 7 cut(s) 11, 17, 252, 429, 639, 795, 897
TspGWI ACGGA 1 cut(s) 258
TspRI CASTG 1 cut(s) 578
Vha464I CTTAAG 1 cut(s) 659
XapI RAATTY 1 cut(s) 505
ZrmI AGTACT 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.