Rw4G023410

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
49023727 .. 49026103
2377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G023410.1

Sequence Viewer

Length: 1011 bp
ATGGCAAACCTTAACTTGGAAAAAGATGGTGTTTTGAGATCATTTTCAGATTCACCGCCAACTCATTACTCTGTAGAAATACAGTTGTTTTCGTTGCTTATTGAAACGTACTCAGAGAATGGATATGAATCGAAGGAGTTTGAAGCTGGAGGGTACAAATGGAAACTGGTGTTTCACCCAAATGGAAACAAAAAGAAGAATGTAAAAGACCACATCTCCCTCTACTTGGTAATAGTTGGAACAGATTCACTAGATAGTAGTTGGGAAGTATATGTTGATTTCAGACTGTTTCTGCTCGATCAGAATAAGGGAAACTACTTGGTTTTTGAAGATGCTTTAACAAAGAAGAAATGCTTTCATGGGGCAATGCGTAGTGCAGGTTTCGATAAACTTATCCCTCTTGAAGATTTTACTGATGTTTCCAATGGATTTCTAGTCGACGATACATGTGTGTTTGGAGCCGAGGTCTTTGTTTGTAAAGAAAGAAGAACAGGCAAAGGCGAGTGCCTAGCAAGGATGAAGGAAGCCTCTGTTTGCAAACATGTTTGGAAGGTTGAGAAATTTTCATCTTTGGATGCTGCATATGAGTCTGAACCGTTCACTGCTGGGGGCTATAATTGGAAGATAAAGCTTTATCCCAAGGGATGTGGCGAAGGTAAGGGTAGTCATCTTTCTCTATTTTTGCACATGGCTAGTCCGATAACCCTCCCCCCTGGCTCTGAACTATTTGTGGAGTATAGATTTCGCATTCTGGATCAAATTCATCACCAGCATCATCATCCTTCTAGTGCTAAGAACTGGTTCCGTCACTTCCGTGACGGTACAGGTTGGGGTTGCCGTAAATTCATTGAACAAGAAACTTTCGGGCAGGTAGACAAGGGGTTTTTGAAGAATGATGCTTGCATAGTGGAAGCAGAGGTGACTGTCCATGGAATTTCTAAAGCACTATCGCAAACTAGTCCTCAATCCCAATGTTTTAAAACGCTGAGGCGTACCCCGATGCGTTTTTGA

Protein Analysis

336

Amino Acids

38.3

Weight (kDa)

7.62

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 22 - 156 4.5e-34 MATH domain
MATH PF00917 39 - 158 4.9e-11 MATH domain
MATH_2 PF22486 180 - 307 1.8e-35 MATH domain
MATH PF00917 186 - 309 1.6e-11 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 368, 859
AccI GTMKAC 2 cut(s) 438, 873
AciI CCGC 1 cut(s) 56
AclWI GGATC 1 cut(s) 762
AcsI RAATTY 4 cut(s) 560, 759, 842, 933
AfaI GTAC 4 cut(s) 110, 155, 823, 994
AfiI CCNNNNNNNGG 2 cut(s) 16, 226
AflIII ACRYGT 2 cut(s) 446, 541
AgsI TTSAA 6 cut(s) 104, 143, 329, 404, 851, 889
AhlI ACTAGT 1 cut(s) 956
AjnI CCWGG 1 cut(s) 712
AleI CACNNNNGTG 1 cut(s) 813
AluBI AGCT 2 cut(s) 146, 631
AluI AGCT 2 cut(s) 146, 631
AlwI GGATC 1 cut(s) 762
ApeKI GCWGC 1 cut(s) 578
ApoI RAATTY 4 cut(s) 560, 759, 842, 933
Asp700I GAANNNNTTC 2 cut(s) 244, 800
AsuHPI GGTGA 4 cut(s) 45, 167, 758, 931
BaeI ACNNNNGTAYC 2 cut(s) 435, 468
BbvCI CCTCAGC 1 cut(s) 986
BbvI GCAGC 1 cut(s) 565
BccI CCATC 1 cut(s) 20
BceAI ACGGC 1 cut(s) 822
BciT130I CCWGG 1 cut(s) 714
BcuI ACTAGT 1 cut(s) 956
BfaI CTAG 6 cut(s) 251, 434, 509, 693, 786, 957
BfmI CTRYAG 1 cut(s) 72
BfuAI ACCTGC 2 cut(s) 368, 859
BisI GCNGC 1 cut(s) 579
BlsI GCNGC 1 cut(s) 580
Bme1390I CCNGG 1 cut(s) 714
BmiI GGNNCC 2 cut(s) 460, 803
BmrFI CCNGG 1 cut(s) 714
BmsI GCATC 5 cut(s) 322, 565, 781, 886, 990
BpmI CTGGAG 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 986
BsaBI GATNNNNATC 1 cut(s) 127
BsaJI CCNNGG 4 cut(s) 462, 639, 712, 928
BsaXI ACNNNNNCTCC 4 cut(s) 200, 230, 450, 480
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 226
Bse1I ACTGG 2 cut(s) 171, 803
Bse3DI GCAATG 1 cut(s) 372
Bse8I GATNNNNATC 1 cut(s) 127
BseBI CCWGG 1 cut(s) 714
BseDI CCNNGG 4 cut(s) 462, 639, 712, 928
BseGI GGATG 4 cut(s) 522, 580, 650, 778
BseJI GATNNNNATC 1 cut(s) 127
BseLI CCNNNNNNNGG 2 cut(s) 16, 226
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 2 cut(s) 126, 977
BseNI ACTGG 2 cut(s) 171, 803
BseXI GCAGC 1 cut(s) 565
BseYI CCCAGC 1 cut(s) 605
BsgI GTGCAG 1 cut(s) 396
BslI CCNNNNNNNGG 2 cut(s) 16, 226
BsmI GAATGC 1 cut(s) 747
Bsp143I GATC 3 cut(s) 38, 298, 754
Bsp19I CCATGG 1 cut(s) 928
BspACI CCGC 1 cut(s) 56
BspCNI CTCAG 2 cut(s) 125, 978
BspLI GGNNCC 2 cut(s) 460, 803
BspMI ACCTGC 2 cut(s) 368, 859
BspPI GGATC 1 cut(s) 762
BsrDI GCAATG 1 cut(s) 372
BsrI ACTGG 2 cut(s) 171, 803
BssECI CCNNGG 4 cut(s) 462, 639, 712, 928
BssMI GATC 3 cut(s) 38, 298, 754
BssT1I CCWWGG 2 cut(s) 639, 928
Bst2UI CCWGG 1 cut(s) 714
Bst4CI ACNGT 5 cut(s) 84, 288, 597, 821, 925
BstC8I GCNNGC 1 cut(s) 901
BstDEI CTNAG 3 cut(s) 112, 792, 986
BstDSI CCRYGG 1 cut(s) 928
BstF5I GGATG 4 cut(s) 522, 580, 650, 778
BstKTI GATC 3 cut(s) 41, 301, 757
BstMBI GATC 3 cut(s) 38, 298, 754
BstNI CCWGG 1 cut(s) 714
BstNSI RCATGY 2 cut(s) 450, 545
BstSCI CCNGG 1 cut(s) 712
BstSFI CTRYAG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 565
BtgI CCRYGG 1 cut(s) 928
BtsCI GGATG 4 cut(s) 522, 580, 650, 778
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 1 cut(s) 600
BveI ACCTGC 2 cut(s) 368, 859
Cac8I GCNNGC 1 cut(s) 901
Csp6I GTAC 4 cut(s) 109, 154, 822, 993
CspCI CAANNNNNGTGG 2 cut(s) 628, 663
CviAII CATG 5 cut(s) 359, 447, 542, 688, 929
CviJI RGCY 7 cut(s) 146, 461, 527, 612, 631, 692, 717
CviKI_1 RGCY 7 cut(s) 146, 461, 527, 612, 631, 692, 717
CviQI GTAC 4 cut(s) 109, 154, 822, 993
DdeI CTNAG 3 cut(s) 112, 792, 986
DpnI GATC 3 cut(s) 40, 300, 756
DpnII GATC 3 cut(s) 38, 298, 754
DraI TTTAAA 1 cut(s) 979
Eco130I CCWWGG 2 cut(s) 639, 928
EcoRII CCWGG 1 cut(s) 712
EcoT14I CCWWGG 2 cut(s) 639, 928
ErhI CCWWGG 2 cut(s) 639, 928
FaeI CATG 5 cut(s) 362, 450, 545, 691, 932
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FatI CATG 5 cut(s) 358, 446, 541, 687, 928
FauNDI CATATG 1 cut(s) 583
FblI GTMKAC 2 cut(s) 438, 873
Fnu4HI GCNGC 1 cut(s) 579
FokI GGATG 4 cut(s) 529, 587, 657, 765
Fsp4HI GCNGC 1 cut(s) 579
FspBI CTAG 6 cut(s) 251, 434, 509, 693, 786, 957
GluI GCNGC 1 cut(s) 579
GsaI CCCAGC 1 cut(s) 609
GsuI CTGGAG 1 cut(s) 168
Hin1II CATG 5 cut(s) 362, 450, 545, 691, 932
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HindIII AAGCTT 1 cut(s) 629
HinfI GANTC 4 cut(s) 50, 128, 245, 587
HphI GGTGA 4 cut(s) 45, 167, 758, 931
Hpy166II GTNNAC 3 cut(s) 439, 600, 874
Hpy188I TCNGA 7 cut(s) 49, 115, 284, 303, 592, 699, 721
Hpy188III TCNNGA 2 cut(s) 401, 752
Hpy8I GTNNAC 3 cut(s) 439, 600, 874
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 5 cut(s) 127, 514, 544, 647, 792
HpyCH4III ACNGT 5 cut(s) 84, 288, 597, 821, 925
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 5 cut(s) 377, 537, 581, 685, 903
HpyF3I CTNAG 3 cut(s) 112, 792, 986
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 5 cut(s) 362, 450, 545, 691, 932
Kzo9I GATC 3 cut(s) 38, 298, 754
LmnI GCTCC 1 cut(s) 458
Lsp1109I GCAGC 1 cut(s) 565
LweI GCATC 5 cut(s) 322, 565, 781, 886, 990
MaeI CTAG 6 cut(s) 251, 434, 509, 693, 786, 957
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 3 cut(s) 806, 815, 919
MalI GATC 3 cut(s) 40, 300, 756
MboI GATC 3 cut(s) 38, 298, 754
MboII GAAGA 7 cut(s) 208, 341, 358, 416, 498, 634, 901
MluCI AATT 5 cut(s) 560, 616, 759, 842, 933
MlyI GAGTC 1 cut(s) 596
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 9 cut(s) 143, 230, 408, 457, 538, 716, 910, 972, 981
MroXI GAANNNNTTC 2 cut(s) 244, 800
MseI TTAA 3 cut(s) 12, 338, 978
MslI CAYNNNNRTG 2 cut(s) 180, 813
MspR9I CCNGG 1 cut(s) 714
Mva1269I GAATGC 1 cut(s) 747
MvaI CCWGG 1 cut(s) 714
NcoI CCATGG 1 cut(s) 928
NdeI CATATG 1 cut(s) 583
NdeII GATC 3 cut(s) 38, 298, 754
NlaIII CATG 5 cut(s) 362, 450, 545, 691, 932
NlaIV GGNNCC 2 cut(s) 460, 803
NmeAIII GCCGAG 1 cut(s) 487
NmuCI GTSAC 3 cut(s) 806, 815, 919
NspI RCATGY 2 cut(s) 450, 545
OliI CACNNNNGTG 1 cut(s) 813
PciI ACATGT 2 cut(s) 446, 541
PctI GAATGC 1 cut(s) 747
PdmI GAANNNNTTC 2 cut(s) 244, 800
PfeI GAWTC 3 cut(s) 50, 128, 245
PkrI GCNGC 1 cut(s) 580
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
PscI ACATGT 2 cut(s) 446, 541
Psp6I CCWGG 1 cut(s) 712
PspFI CCCAGC 1 cut(s) 605
PspGI CCWGG 1 cut(s) 712
PspN4I GGNNCC 2 cut(s) 460, 803
RsaI GTAC 4 cut(s) 110, 155, 823, 994
RsaNI GTAC 4 cut(s) 109, 154, 822, 993
RseI CAYNNNNRTG 2 cut(s) 180, 813
SalI GTCGAC 1 cut(s) 437
SaqAI TTAA 3 cut(s) 12, 338, 978
SatI GCNGC 1 cut(s) 579
Sau3AI GATC 3 cut(s) 38, 298, 754
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 1 cut(s) 714
SfaNI GCATC 5 cut(s) 322, 565, 781, 886, 990
SfcI CTRYAG 1 cut(s) 72
SmiMI CAYNNNNRTG 2 cut(s) 180, 813
SpeI ACTAGT 1 cut(s) 956
Sse9I AATT 5 cut(s) 560, 616, 759, 842, 933
SsiI CCGC 1 cut(s) 56
SspMI CTAG 6 cut(s) 251, 434, 509, 693, 786, 957
StyD4I CCNGG 1 cut(s) 712
StyI CCWWGG 2 cut(s) 639, 928
TaaI ACNGT 5 cut(s) 84, 288, 597, 821, 925
TaiI ACGT 1 cut(s) 110
TaqI TCGA 4 cut(s) 131, 297, 384, 438
TasI AATT 5 cut(s) 560, 616, 759, 842, 933
TfiI GAWTC 3 cut(s) 50, 128, 245
Tru1I TTAA 3 cut(s) 12, 338, 978
Tru9I TTAA 3 cut(s) 12, 338, 978
TscAI CASTG 1 cut(s) 607
TseFI GTSAC 3 cut(s) 806, 815, 919
TseI GCWGC 1 cut(s) 578
Tsp45I GTSAC 3 cut(s) 806, 815, 919
TspDTI ATGAA 6 cut(s) 141, 347, 533, 555, 752, 835
TspGWI ACGGA 2 cut(s) 794, 803
TspRI CASTG 1 cut(s) 607
XapI RAATTY 4 cut(s) 560, 759, 842, 933
XceI RCATGY 2 cut(s) 450, 545
XmiI GTMKAC 2 cut(s) 438, 873
XmnI GAANNNNTTC 2 cut(s) 244, 800
XspI CTAG 6 cut(s) 251, 434, 509, 693, 786, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.