Prupe.7G081700_v2.0.a1

meprin and TRAF homology domain-containing protein MATH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000185
Physical Location & Seq
Forward (+)
11674173 .. 11677120
2948 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G081700.1

Sequence Viewer

Length: 894 bp
ATGTCAACCACGCTCGCAAGAAAGTATGAATCTAGTGCGTTTGAAGCTGGCGGTCACAAATGGAGGTTGTCACTTTACCCAAATGAAATGATAAATGGACATTGTTACATATCCCTCTACTTGGCAACAGCGAAATCAAGCGTTCCTTCTTTGAGATCAATGCACAGTGGTATTAGACACCGGCCTTCTTCAATATACAATGGTATTAGTGACGGGGAACACGTTTATGCCACTTTTAGATTGTTTGTATTTGATCAGACACAGCAGGAATATTTTACCGTCGAAGATGGGGCCGGAATATTAAGCCGATTTGATCGCGTGACAACGGAGGTGGGTTTTGCAAAATTTCTCCTCCGCGATACTTTCGAGCATCCTTCTGAGGGATACCTTCTGAATGACTGCTGCACATTTGGGGCGGAGGTTTTTGTTAATACGAGTGGGAGGACGAGTTATGGGGAATCTATTTCCCGGATACACAAGTCCATTCTCAGCCCCCCTTTCCGTTATGATTTGGTAAAGTTCTCGTCACAATTTGGGCTGGAGCACTTGTGTCCAAATCTGATCAGTTTTGGAGAAAGAAAATGGCAGCTATGTGTTTATCCAAAAGGATACGGGCAACATAAGGACGTATCACTGTCACTTTACCTACGATCGGCCGACGATTTGTACACCCTTCCCAGCGTTTATGTAGAATTCAAGCTTCGGGTAGTGGATCGAGCCTTTAATTTACACCATATTGAACGAACAGGCAAACACTGGTTCCTGTCCTCGGACAACACTTTTGGTTGGTCAGATTTTATGCCGTTGCGAACTTTAAATGACCCTTCAAAGGGGTTCCTTAGGGACGATATATTATCTGTTGTAGTTGAAATGCTGGTTAAGAATGGGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MATH

Protein Analysis

298

Amino Acids

33.95

Weight (kDa)

7.19

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 318, 357
AciI CCGC 3 cut(s) 51, 355, 416
AclWI GGATC 1 cut(s) 720
AcoI YGGCCR 1 cut(s) 654
AcsI RAATTY 2 cut(s) 344, 692
AfaI GTAC 1 cut(s) 668
AfiI CCNNNNNNNGG 6 cut(s) 121, 380, 652, 769, 829, 830
AflIII ACRYGT 1 cut(s) 220
AgsI TTSAA 6 cut(s) 44, 192, 697, 740, 828, 869
AluBI AGCT 3 cut(s) 47, 589, 700
AluI AGCT 3 cut(s) 47, 589, 700
Alw21I GWGCWC 1 cut(s) 546
AlwI GGATC 1 cut(s) 720
AoxI GGCC 3 cut(s) 182, 291, 654
ApeKI GCWGC 2 cut(s) 402, 586
ApoI RAATTY 2 cut(s) 344, 692
ArsI GACNNNNNNTTYG 2 cut(s) 764, 796
AspS9I GGNCC 2 cut(s) 291, 888
AsuC2I CCSGG 1 cut(s) 469
AvaII GGWCC 1 cut(s) 888
AxyI CCTNAGG 1 cut(s) 839
BaeI ACNNNNGTAYC 2 cut(s) 464, 497
Bbv12I GWGCWC 1 cut(s) 546
BbvI GCAGC 2 cut(s) 389, 598
BccI CCATC 1 cut(s) 281
BceAI ACGGC 1 cut(s) 787
BciVI GTATCC 3 cut(s) 377, 465, 602
BclI TGATCA 2 cut(s) 253, 561
BcnI CCSGG 1 cut(s) 469
BfaI CTAG 1 cut(s) 33
BfuI GTATCC 3 cut(s) 377, 465, 602
BisI GCNGC 2 cut(s) 403, 587
BlsI GCNGC 2 cut(s) 404, 588
Bme1390I CCNGG 1 cut(s) 469
Bme18I GGWCC 1 cut(s) 888
BmgT120I GGNCC 2 cut(s) 291, 888
BmiI GGNNCC 4 cut(s) 292, 761, 836, 889
BmrFI CCNGG 1 cut(s) 469
BmsI GCATC 1 cut(s) 379
BpmI CTGGAG 1 cut(s) 560
BpuMI CCSGG 1 cut(s) 469
BsaJI CCNNGG 1 cut(s) 768
BsaXI ACNNNNNCTCC 4 cut(s) 433, 463, 533, 563
Bsc4I CCNNNNNNNGG 6 cut(s) 121, 380, 652, 769, 829, 830
Bse118I RCCGGY 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 761
Bse21I CCTNAGG 1 cut(s) 839
BseDI CCNNGG 1 cut(s) 768
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 6 cut(s) 121, 380, 652, 769, 829, 830
BseMII CTCAG 2 cut(s) 369, 502
BseNI ACTGG 1 cut(s) 761
BseRI GAGGAG 1 cut(s) 341
BseX3I CGGCCG 1 cut(s) 654
BseXI GCAGC 2 cut(s) 389, 598
BseYI CCCAGC 1 cut(s) 677
BsgI GTGCAG 1 cut(s) 388
Bsh1236I CGCG 2 cut(s) 318, 357
Bsh1285I CGRYCG 2 cut(s) 653, 657
BshFI GGCC 3 cut(s) 184, 293, 656
BsiEI CGRYCG 2 cut(s) 653, 657
BsiHKAI GWGCWC 1 cut(s) 546
BsiSI CCGG 3 cut(s) 181, 294, 469
BslFI GGGAC 1 cut(s) 857
BslI CCNNNNNNNGG 6 cut(s) 121, 380, 652, 769, 829, 830
BsmFI GGGAC 1 cut(s) 857
BsnI GGCC 3 cut(s) 184, 293, 656
Bsp1286I GDGCHC 1 cut(s) 546
Bsp1407I TGTACA 1 cut(s) 666
Bsp143I GATC 6 cut(s) 155, 253, 313, 561, 650, 712
BspACI CCGC 3 cut(s) 51, 355, 416
BspANI GGCC 3 cut(s) 184, 293, 656
BspCNI CTCAG 2 cut(s) 370, 501
BspFNI CGCG 2 cut(s) 318, 357
BspLI GGNNCC 4 cut(s) 292, 761, 836, 889
BspPI GGATC 1 cut(s) 720
BsrFI RCCGGY 1 cut(s) 180
BsrGI TGTACA 1 cut(s) 666
BsrI ACTGG 1 cut(s) 761
BssAI RCCGGY 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 768
BssMI GATC 6 cut(s) 155, 253, 313, 561, 650, 712
Bst4CI ACNGT 3 cut(s) 167, 280, 636
BstAUI TGTACA 1 cut(s) 666
BstC8I GCNNGC 2 cut(s) 15, 49
BstDEI CTNAG 3 cut(s) 378, 488, 839
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 2 cut(s) 318, 357
BstKTI GATC 6 cut(s) 158, 256, 316, 564, 653, 715
BstMBI GATC 6 cut(s) 155, 253, 313, 561, 650, 712
BstMCI CGRYCG 2 cut(s) 653, 657
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 467
BstUI CGCG 2 cut(s) 318, 357
BstV1I GCAGC 2 cut(s) 389, 598
BstZI CGGCCG 1 cut(s) 654
Bsu36I CCTNAGG 1 cut(s) 839
BsuI GTATCC 3 cut(s) 377, 465, 602
BsuRI GGCC 3 cut(s) 184, 293, 656
BtsCI GGATG 1 cut(s) 370
BtsIMutI CAGTG 3 cut(s) 172, 632, 754
Cac8I GCNNGC 2 cut(s) 15, 49
Cfr10I RCCGGY 1 cut(s) 180
Cfr13I GGNCC 2 cut(s) 291, 888
Csp6I GTAC 1 cut(s) 667
CspCI CAANNNNNGTGG 2 cut(s) 312, 347
CviQI GTAC 1 cut(s) 667
DdeI CTNAG 3 cut(s) 378, 488, 839
DpnI GATC 6 cut(s) 157, 255, 315, 563, 652, 714
DpnII GATC 6 cut(s) 155, 253, 313, 561, 650, 712
DraI TTTAAA 1 cut(s) 816
EaeI YGGCCR 1 cut(s) 654
EagI CGGCCG 1 cut(s) 654
EciI GGCGGA 1 cut(s) 431
EclXI CGGCCG 1 cut(s) 654
Eco47I GGWCC 1 cut(s) 888
Eco52I CGGCCG 1 cut(s) 654
Eco81I CCTNAGG 1 cut(s) 839
EcoO109I RGGNCCY 1 cut(s) 888
EcoRI GAATTC 1 cut(s) 692
FalI AAGNNNNNCTT 2 cut(s) 130, 162
FaqI GGGAC 1 cut(s) 857
FbaI TGATCA 2 cut(s) 253, 561
Fnu4HI GCNGC 2 cut(s) 403, 587
FokI GGATG 1 cut(s) 357
Fsp4HI GCNGC 2 cut(s) 403, 587
FspBI CTAG 1 cut(s) 33
GluI GCNGC 2 cut(s) 403, 587
GsaI CCCAGC 1 cut(s) 681
GsuI CTGGAG 1 cut(s) 560
HaeIII GGCC 3 cut(s) 184, 293, 656
HapII CCGG 3 cut(s) 181, 294, 469
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 698
HinfI GANTC 2 cut(s) 29, 458
HpaII CCGG 3 cut(s) 181, 294, 469
Hpy166II GTNNAC 2 cut(s) 6, 669
Hpy188I TCNGA 6 cut(s) 258, 379, 393, 561, 772, 793
Hpy8I GTNNAC 2 cut(s) 6, 669
Hpy99I CGWCG 2 cut(s) 284, 662
HpyAV CCTTC 6 cut(s) 156, 195, 384, 398, 683, 834
HpyCH4III ACNGT 3 cut(s) 167, 280, 636
HpyCH4IV ACGT 2 cut(s) 222, 627
HpyCH4V TGCA 3 cut(s) 163, 341, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 3 cut(s) 378, 488, 839
HpySE526I ACGT 2 cut(s) 222, 627
Ksp22I TGATCA 2 cut(s) 253, 561
Kzo9I GATC 6 cut(s) 155, 253, 313, 561, 650, 712
LmnI GCTCC 1 cut(s) 541
Lsp1109I GCAGC 2 cut(s) 389, 598
LweI GCATC 1 cut(s) 379
MaeI CTAG 1 cut(s) 33
MaeII ACGT 2 cut(s) 222, 627
MaeIII GTNAC 7 cut(s) 53, 69, 104, 209, 319, 525, 636
MalI GATC 6 cut(s) 157, 255, 315, 563, 652, 714
MboI GATC 6 cut(s) 155, 253, 313, 561, 650, 712
MboII GAAGA 2 cut(s) 180, 296
MhlI GDGCHC 1 cut(s) 546
MluCI AATT 4 cut(s) 344, 530, 692, 724
MnlI CCTC 8 cut(s) 57, 125, 322, 362, 373, 412, 435, 778
MseI TTAA 5 cut(s) 302, 429, 723, 815, 879
MslI CAYNNNNRTG 1 cut(s) 225
MspI CCGG 3 cut(s) 181, 294, 469
MspR9I CCNGG 1 cut(s) 469
MvnI CGCG 2 cut(s) 318, 357
MwoI GCNNNNNNNGC 1 cut(s) 44
NciI CCSGG 1 cut(s) 469
NdeII GATC 6 cut(s) 155, 253, 313, 561, 650, 712
NlaIV GGNNCC 4 cut(s) 292, 761, 836, 889
NmuCI GTSAC 6 cut(s) 53, 69, 209, 319, 525, 636
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PfeI GAWTC 2 cut(s) 29, 458
PfoI TCCNGGA 1 cut(s) 467
PkrI GCNGC 2 cut(s) 404, 588
Ple19I CGATCG 1 cut(s) 653
PpuMI RGGWCCY 1 cut(s) 888
Psp5II RGGWCCY 1 cut(s) 888
PspFI CCCAGC 1 cut(s) 677
PspN4I GGNNCC 4 cut(s) 292, 761, 836, 889
PspPI GGNCC 2 cut(s) 291, 888
PspPPI RGGWCCY 1 cut(s) 888
PvuI CGATCG 1 cut(s) 653
RsaI GTAC 1 cut(s) 668
RsaNI GTAC 1 cut(s) 667
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 5 cut(s) 302, 429, 723, 815, 879
SatI GCNGC 2 cut(s) 403, 587
Sau3AI GATC 6 cut(s) 155, 253, 313, 561, 650, 712
Sau96I GGNCC 2 cut(s) 291, 888
ScrFI CCNGG 1 cut(s) 469
SduI GDGCHC 1 cut(s) 546
SfaNI GCATC 1 cut(s) 379
SinI GGWCC 1 cut(s) 888
SmiMI CAYNNNNRTG 1 cut(s) 225
Sse9I AATT 4 cut(s) 344, 530, 692, 724
SsiI CCGC 3 cut(s) 51, 355, 416
SspI AATATT 2 cut(s) 272, 300
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 467
TaaI ACNGT 3 cut(s) 167, 280, 636
TaiI ACGT 2 cut(s) 225, 630
TaqI TCGA 3 cut(s) 282, 366, 715
TasI AATT 4 cut(s) 344, 530, 692, 724
TatI WGTACW 1 cut(s) 666
TfiI GAWTC 2 cut(s) 29, 458
Tru1I TTAA 5 cut(s) 302, 429, 723, 815, 879
Tru9I TTAA 5 cut(s) 302, 429, 723, 815, 879
TscAI CASTG 3 cut(s) 172, 639, 761
TseFI GTSAC 6 cut(s) 53, 69, 209, 319, 525, 636
TseI GCWGC 2 cut(s) 402, 586
Tsp45I GTSAC 6 cut(s) 53, 69, 209, 319, 525, 636
TspDTI ATGAA 2 cut(s) 42, 99
TspGWI ACGGA 2 cut(s) 341, 491
TspRI CASTG 3 cut(s) 172, 639, 761
VpaK11BI GGWCC 1 cut(s) 888
XapI RAATTY 2 cut(s) 344, 692
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.