RchiOBHm_Chr4g0427031

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
52321965 .. 52323357
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39599

Sequence Viewer

Length: 768 bp
ATGACTGAAAATTCAGTGGATGGTTATGAAGCAGAGGAGTTTGCAGCTGGAGGGCACAAATGGAAATTGGTGATATACCCAAATGGAAACAAGAAAAGAAATGTGGAAGGCCACGTCTCTCTCTACTTGGAATTGGCTGGAGAATATTCACTTCAGGGTGATTGGGAGATATATGTGGATTTTAGGTTGTTTTTACTTGATCAGAAAAGGGGCAAGTACTTGGTTCTTGAAGATGCTTTCGCAAAGGAAAATTGCTTTCATCGGGAAATGCTGCGCTTGCCTGGTTTTGATAGGTTTATGCCTCTTGAAGAGTTTACTAATGCCTCCAATGGATATGTAGTTGATGACACCTGCGTGTTTAGTGCTGAGGACTTTGTTTGTAAAGAAAGAACAAAAGGCAAAAGAGAGCGTTTATTAACGACAAACAATGCAGTTATGCACAGGCAGGTTTGGAAGGTTGAGAATTTTTCAAAGCTAGATGATCCATTCTATAAGTCAGAACCATTCGTTGCTGGAAACCAGAAATGGGAGATACAGTTCTATCCCAAGGGAATTGCCCACGGAATGGGGACTCATCTTTCTCTTTACTTGGCATTATTTGATTTTAAACCAACTCCTCCTGTGTTCAAGATATTTGCAGAGTTTTGCCTGCGTATTGTAGATCGAAAGCATGCCAATCATAAGACATGGTCAGGTAAACACTGTTTCAGTGCCACGTCTTCCTCTTGGGGTTTGCCTAAGTTCATTAGAGCAAGTTCACCGGTGTAG

Protein Analysis

255

Amino Acids

29.53

Weight (kDa)

7.67

Isoelectric Point (pI)

29.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 5 - 123 3.9e-28 MATH domain
MATH PF00917 10 - 123 2.5e-10 MATH domain
MATH_2 PF22486 150 - 251 3.3e-21 MATH domain
MATH PF00917 153 - 250 4.9e-09 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 359
Acc36I ACCTGC 2 cut(s) 359, 436
AccB7I CCANNNNNTGG 1 cut(s) 565
AclWI GGATC 1 cut(s) 476
AcsI RAATTY 2 cut(s) 10, 463
AcuI CTGAAG 1 cut(s) 137
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 2 cut(s) 526, 565
AgeI ACCGGT 1 cut(s) 760
AgsI TTSAA 4 cut(s) 230, 308, 471, 628
AjiI CACGTC 2 cut(s) 115, 717
AjnI CCWGG 1 cut(s) 280
AleI CACNNNNGTG 1 cut(s) 353
AloI GAACNNNNNNTCC 2 cut(s) 521, 553
AluBI AGCT 2 cut(s) 47, 475
AluI AGCT 2 cut(s) 47, 475
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 1 cut(s) 476
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 2 cut(s) 44, 271
ApoI RAATTY 2 cut(s) 10, 463
AsiGI ACCGGT 1 cut(s) 760
AspLEI GCGC 1 cut(s) 276
AsuHPI GGTGA 3 cut(s) 82, 170, 750
BaeGI GKGCMC 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 711
BbvCI CCTCAGC 1 cut(s) 366
BbvI GCAGC 2 cut(s) 56, 258
BccI CCATC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 282
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 1 cut(s) 476
BfuAI ACCTGC 2 cut(s) 359, 436
BisI GCNGC 2 cut(s) 45, 272
BlsI GCNGC 2 cut(s) 46, 273
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 1 cut(s) 282
BmgBI CACGTC 2 cut(s) 115, 717
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 711
BpmI CTGGAG 2 cut(s) 69, 159
Bpu10I CCTNAGC 1 cut(s) 366
BsaJI CCNNGG 2 cut(s) 546, 559
BsaWI WCCGGW 1 cut(s) 760
BsaXI ACNNNNNCTCC 2 cut(s) 521, 551
Bsc4I CCNNNNNNNGG 2 cut(s) 526, 565
Bse118I RCCGGY 1 cut(s) 760
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 546, 559
BseGI GGATG 1 cut(s) 25
BseLI CCNNNNNNNGG 2 cut(s) 526, 565
BseMII CTCAG 1 cut(s) 357
BseRI GAGGAG 2 cut(s) 50, 606
BseSI GKGCMC 1 cut(s) 57
BseXI GCAGC 2 cut(s) 56, 258
BshFI GGCC 1 cut(s) 111
BshTI ACCGGT 1 cut(s) 760
BsiSI CCGG 1 cut(s) 761
BslFI GGGAC 1 cut(s) 583
BslI CCNNNNNNNGG 2 cut(s) 526, 565
BsmAI GTCTC 1 cut(s) 121
BsmBI CGTCTC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 583
BsnI GGCC 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 3 cut(s) 199, 481, 661
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 358
BspMI ACCTGC 2 cut(s) 359, 436
BspPI GGATC 1 cut(s) 476
BsrFI RCCGGY 1 cut(s) 760
BssAI RCCGGY 1 cut(s) 760
BssECI CCNNGG 2 cut(s) 546, 559
BssMI GATC 3 cut(s) 199, 481, 661
BssT1I CCWWGG 1 cut(s) 546
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 537, 704
Bst6I CTCTTC 1 cut(s) 303
BstC8I GCNNGC 3 cut(s) 278, 650, 672
BstDEI CTNAG 2 cut(s) 366, 738
BstDSI CCRYGG 1 cut(s) 559
BstF5I GGATG 1 cut(s) 25
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 3 cut(s) 202, 484, 664
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 3 cut(s) 199, 481, 661
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 674
BstSCI CCNGG 1 cut(s) 280
BstSLI GKGCMC 1 cut(s) 57
BstV1I GCAGC 2 cut(s) 56, 258
BstV2I GAAGAC 1 cut(s) 711
BsuRI GGCC 1 cut(s) 111
BtgI CCRYGG 1 cut(s) 559
BtrI CACGTC 2 cut(s) 115, 717
BtsCI GGATG 1 cut(s) 25
BtsIMutI CAGTG 3 cut(s) 21, 700, 715
BveI ACCTGC 2 cut(s) 359, 436
Cac8I GCNNGC 3 cut(s) 278, 650, 672
CfoI GCGC 1 cut(s) 276
Cfr10I RCCGGY 1 cut(s) 760
Csp6I GTAC 1 cut(s) 217
CspAI ACCGGT 1 cut(s) 760
CviAII CATG 2 cut(s) 671, 687
CviJI RGCY 4 cut(s) 47, 111, 137, 475
CviKI_1 RGCY 4 cut(s) 47, 111, 137, 475
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 2 cut(s) 366, 738
DpnI GATC 3 cut(s) 201, 483, 663
DpnII GATC 3 cut(s) 199, 481, 661
DraI TTTAAA 1 cut(s) 607
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco130I CCWWGG 1 cut(s) 546
Eco57I CTGAAG 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 546
ErhI CCWWGG 1 cut(s) 546
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 2 cut(s) 674, 690
FaqI GGGAC 1 cut(s) 583
FatI CATG 2 cut(s) 670, 686
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 2 cut(s) 45, 272
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 2 cut(s) 45, 272
FspBI CTAG 1 cut(s) 476
GlaI GCGC 1 cut(s) 275
GluI GCNGC 2 cut(s) 45, 272
GsuI CTGGAG 2 cut(s) 69, 159
HaeIII GGCC 1 cut(s) 111
HapII CCGG 1 cut(s) 761
HhaI GCGC 1 cut(s) 276
Hin1II CATG 2 cut(s) 674, 690
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HinfI GANTC 1 cut(s) 571
HpaII CCGG 1 cut(s) 761
HphI GGTGA 3 cut(s) 82, 170, 750
Hpy166II GTNNAC 3 cut(s) 315, 698, 758
Hpy188I TCNGA 2 cut(s) 204, 499
Hpy188III TCNNGA 4 cut(s) 227, 263, 305, 628
Hpy8I GTNNAC 3 cut(s) 315, 698, 758
HpyAV CCTTC 2 cut(s) 101, 448
HpyCH4III ACNGT 2 cut(s) 537, 704
HpyCH4IV ACGT 2 cut(s) 114, 716
HpyCH4V TGCA 4 cut(s) 44, 431, 439, 638
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
HpyF3I CTNAG 2 cut(s) 366, 738
HpySE526I ACGT 2 cut(s) 114, 716
Hsp92II CATG 2 cut(s) 674, 690
HspAI GCGC 1 cut(s) 274
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 3 cut(s) 199, 481, 661
Lsp1109I GCAGC 2 cut(s) 56, 258
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 476
MaeII ACGT 2 cut(s) 114, 716
MalI GATC 3 cut(s) 201, 483, 663
MboI GATC 3 cut(s) 199, 481, 661
MboII GAAGA 3 cut(s) 242, 320, 711
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 6 cut(s) 10, 65, 131, 250, 463, 552
MlyI GAGTC 1 cut(s) 565
MnlI CCTC 7 cut(s) 28, 44, 312, 334, 361, 627, 733
MseI TTAA 2 cut(s) 416, 606
MslI CAYNNNNRTG 1 cut(s) 353
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 1 cut(s) 761
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 277
NdeII GATC 3 cut(s) 199, 481, 661
NlaIII CATG 2 cut(s) 674, 690
NspI RCATGY 1 cut(s) 674
OliI CACNNNNGTG 1 cut(s) 353
PaeI GCATGC 1 cut(s) 674
PaqCI CACCTGC 1 cut(s) 359
PflFI GACNNNGTC 1 cut(s) 688
PflMI CCANNNNNTGG 1 cut(s) 565
PinAI ACCGGT 1 cut(s) 760
PkrI GCNGC 2 cut(s) 46, 273
PleI GAGTC 1 cut(s) 565
PpsI GAGTC 1 cut(s) 565
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PsyI GACNNNGTC 1 cut(s) 688
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 353
SaqAI TTAA 2 cut(s) 416, 606
SatI GCNGC 2 cut(s) 45, 272
Sau3AI GATC 3 cut(s) 199, 481, 661
ScaI AGTACT 1 cut(s) 218
SchI GAGTC 1 cut(s) 565
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 1 cut(s) 57
SfaNI GCATC 1 cut(s) 223
SgrAI CRCCGGYG 1 cut(s) 760
SmiMI CAYNNNNRTG 1 cut(s) 353
SphI GCATGC 1 cut(s) 674
Sse9I AATT 6 cut(s) 10, 65, 131, 250, 463, 552
SspI AATATT 1 cut(s) 146
SspMI CTAG 1 cut(s) 476
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 2 cut(s) 537, 704
TaiI ACGT 2 cut(s) 117, 719
TaqI TCGA 1 cut(s) 664
TasI AATT 6 cut(s) 10, 65, 131, 250, 463, 552
TatI WGTACW 1 cut(s) 216
Tru1I TTAA 2 cut(s) 416, 606
Tru9I TTAA 2 cut(s) 416, 606
TscAI CASTG 3 cut(s) 21, 707, 715
TseI GCWGC 2 cut(s) 44, 271
TspDTI ATGAA 3 cut(s) 42, 248, 733
TspGWI ACGGA 1 cut(s) 576
TspRI CASTG 3 cut(s) 21, 707, 715
Tth111I GACNNNGTC 1 cut(s) 688
Van91I CCANNNNNTGG 1 cut(s) 565
XapI RAATTY 2 cut(s) 10, 463
XceI RCATGY 1 cut(s) 674
XspI CTAG 1 cut(s) 476
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.